Rorug01G0107600

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
19321244 .. 19323269
2026 bp
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UTR
Exon/CDS
Intron
Rorug01G0107600.1

Sequence Viewer

Length: 564 bp
ATGAGGCCTTTGGATGAAGCTGAAACCACTGCAGTGTTTGAAAAGCTGTTCAAGTTCACAGGCAACAACCTCAAAAACATTGTCGAGAACCCTTCTCATGAAGGTCCAGACCCAAATCCAGGTCGCTACTGCTTTCGCCTCAACAAGAACAAGGTCTACTACGTCAGTGACTCACTAGTAAAGCGTGCAACAAACATAGCTCGGGTCAATTTAGTCTCTCTTGGAACTTGTATTGGTAAGTTCACTCACGGTGGCAGCTTCCACCTAACTGTTCAATGTTTGAGTTTAGTGGCCTCAAATGCTAAACACAAGGTCTGGCTCAAACCTACCTCCGAGATGTCATATCTATACGGAAACCATGTTTTGAAAGGTGGGTTGGGTAGGATTACAGAGAATATTATGCCCGGTGATGGGGTGGTTGTGTTTTCAATGTCAGATATTCCATTGGGTTTTGGGATTGCGGCCAAGTCTACCCAGGATTGTAGGAAGTTGGACCCCAATGGAATTGTGGTACTTCACCAGGCTGATATTGGAGAGTACTTGAGGATGGAGGATGAGCTTTAA

Protein Analysis

187

Amino Acids

20.66

Weight (kDa)

8.32

Isoelectric Point (pI)

26.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
pre-PUA_NIP7 PF17833 1 - 91 3.9e-21 NIP7/UPF0113, pre-PUA domain
UPF0113 PF03657 104 - 182 2.7e-20 UPF0113 PUA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 156, 470
AciI CCGC 1 cut(s) 461
AcoI YGGCCR 1 cut(s) 462
AfaI GTAC 2 cut(s) 513, 539
AfiI CCNNNNNNNGG 3 cut(s) 119, 410, 411
AgsI TTSAA 5 cut(s) 41, 52, 275, 367, 429
AhlI ACTAGT 1 cut(s) 175
AjnI CCWGG 3 cut(s) 118, 474, 519
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AleI CACNNNNGTG 1 cut(s) 32
AluBI AGCT 5 cut(s) 20, 46, 200, 258, 559
AluI AGCT 5 cut(s) 20, 46, 200, 258, 559
Alw26I GTCTC 1 cut(s) 220
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 3 cut(s) 5, 291, 462
ApeKI GCWGC 1 cut(s) 255
ArsI GACNNNNNNTTYG 2 cut(s) 66, 98
AspS9I GGNCC 2 cut(s) 104, 493
AsuC2I CCSGG 1 cut(s) 405
AsuHPI GGTGA 2 cut(s) 419, 509
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 2 cut(s) 104, 493
BbvI GCAGC 1 cut(s) 267
BccI CCATC 2 cut(s) 404, 541
BciT130I CCWGG 3 cut(s) 120, 476, 521
BcnI CCSGG 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 220
BcuI ACTAGT 1 cut(s) 175
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 2 cut(s) 256, 462
BlsI GCNGC 2 cut(s) 257, 463
BmcAI AGTACT 1 cut(s) 539
Bme1390I CCNGG 4 cut(s) 120, 405, 476, 521
Bme18I GGWCC 2 cut(s) 104, 493
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 2 cut(s) 104, 493
BmiI GGNNCC 1 cut(s) 495
BmrFI CCNGG 4 cut(s) 120, 405, 476, 521
BpuEI CTTGAG 1 cut(s) 562
BpuMI CCSGG 1 cut(s) 405
BsaJI CCNNGG 1 cut(s) 474
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 410, 411
BseBI CCWGG 3 cut(s) 120, 476, 521
BseDI CCNNGG 1 cut(s) 474
BseGI GGATG 3 cut(s) 19, 552, 559
BseLI CCNNNNNNNGG 3 cut(s) 119, 410, 411
BseXI GCAGC 1 cut(s) 267
BshFI GGCC 3 cut(s) 7, 293, 464
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 1 cut(s) 405
BslI CCNNNNNNNGG 3 cut(s) 119, 410, 411
BsmAI GTCTC 1 cut(s) 220
BsnI GGCC 3 cut(s) 7, 293, 464
BsoBI CYCGRG 1 cut(s) 201
BspACI CCGC 1 cut(s) 461
BspANI GGCC 3 cut(s) 7, 293, 464
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 495
BspMAI CTGCAG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 474
Bst2UI CCWGG 3 cut(s) 120, 476, 521
Bst4CI ACNGT 2 cut(s) 251, 271
BstC8I GCNNGC 1 cut(s) 186
BstF5I GGATG 3 cut(s) 19, 552, 559
BstMAI GTCTC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstNI CCWGG 3 cut(s) 120, 476, 521
BstSCI CCNGG 4 cut(s) 118, 403, 474, 519
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 267
BsuRI GGCC 3 cut(s) 7, 293, 464
BtsCI GGATG 3 cut(s) 19, 552, 559
BtsI GCAGTG 2 cut(s) 27, 39
BtsIMutI CAGTG 3 cut(s) 27, 39, 172
Cac8I GCNNGC 1 cut(s) 186
CciI TCATGA 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 104, 493
Csp6I GTAC 2 cut(s) 512, 538
CviAII CATG 2 cut(s) 98, 359
CviQI GTAC 2 cut(s) 512, 538
EaeI YGGCCR 1 cut(s) 462
Eco147I AGGCCT 1 cut(s) 7
Eco47I GGWCC 2 cut(s) 104, 493
Eco88I CYCGRG 1 cut(s) 201
EcoRII CCWGG 3 cut(s) 118, 474, 519
FaeI CATG 2 cut(s) 101, 362
FaiI YATR 6 cut(s) 99, 197, 343, 349, 360, 401
FatI CATG 2 cut(s) 97, 358
FblI GTMKAC 2 cut(s) 156, 470
Fnu4HI GCNGC 2 cut(s) 256, 462
FokI GGATG 2 cut(s) 26, 559
Fsp4HI GCNGC 2 cut(s) 256, 462
FspBI CTAG 1 cut(s) 176
GluI GCNGC 2 cut(s) 256, 462
HaeIII GGCC 3 cut(s) 7, 293, 464
HapII CCGG 1 cut(s) 405
Hin1II CATG 2 cut(s) 101, 362
HinfI GANTC 1 cut(s) 170
HpaII CCGG 1 cut(s) 405
HphI GGTGA 2 cut(s) 419, 509
Hpy166II GTNNAC 4 cut(s) 57, 157, 243, 471
Hpy188I TCNGA 2 cut(s) 334, 436
Hpy188III TCNNGA 3 cut(s) 85, 98, 107
Hpy8I GTNNAC 4 cut(s) 57, 157, 243, 471
HpyAV CCTTC 2 cut(s) 95, 102
HpyCH4III ACNGT 2 cut(s) 251, 271
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 32, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 101, 362
Lsp1109I GCAGC 1 cut(s) 267
MaeI CTAG 1 cut(s) 176
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 167
MluCI AATT 2 cut(s) 208, 504
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 471
MnlI CCTC 6 cut(s) 80, 149, 304, 340, 537, 544
MseI TTAA 1 cut(s) 562
MslI CAYNNNNRTG 1 cut(s) 32
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 4 cut(s) 120, 405, 476, 521
MvaI CCWGG 3 cut(s) 120, 476, 521
MwoI GCNNNNNNNGC 1 cut(s) 299
NciI CCSGG 1 cut(s) 405
NlaIII CATG 2 cut(s) 101, 362
NlaIV GGNNCC 1 cut(s) 495
NmuCI GTSAC 1 cut(s) 167
OliI CACNNNNGTG 1 cut(s) 32
PagI TCATGA 1 cut(s) 97
PceI AGGCCT 1 cut(s) 7
PkrI GCNGC 2 cut(s) 257, 463
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Psp6I CCWGG 3 cut(s) 118, 474, 519
PspGI CCWGG 3 cut(s) 118, 474, 519
PspN4I GGNNCC 1 cut(s) 495
PspPI GGNCC 2 cut(s) 104, 493
PsrI GAACNNNNNNTAC 2 cut(s) 140, 172
PstI CTGCAG 1 cut(s) 34
RsaI GTAC 2 cut(s) 513, 539
RsaNI GTAC 2 cut(s) 512, 538
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 562
SatI GCNGC 2 cut(s) 256, 462
Sau96I GGNCC 2 cut(s) 104, 493
ScaI AGTACT 1 cut(s) 539
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 4 cut(s) 120, 405, 476, 521
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 2 cut(s) 104, 493
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
SpeI ACTAGT 1 cut(s) 175
Sse9I AATT 2 cut(s) 208, 504
SseBI AGGCCT 1 cut(s) 7
SsiI CCGC 1 cut(s) 461
SspI AATATT 1 cut(s) 397
SspMI CTAG 1 cut(s) 176
StuI AGGCCT 1 cut(s) 7
StyD4I CCNGG 4 cut(s) 118, 403, 474, 519
TaaI ACNGT 2 cut(s) 251, 271
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 208, 504
TatI WGTACW 1 cut(s) 537
TauI GCSGC 1 cut(s) 464
Tru1I TTAA 1 cut(s) 562
Tru9I TTAA 1 cut(s) 562
TscAI CASTG 3 cut(s) 34, 39, 172
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 1 cut(s) 255
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 30, 114
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 3 cut(s) 34, 39, 172
VpaK11BI GGWCC 2 cut(s) 104, 493
XcmI CCANNNNNNNNNTGG 2 cut(s) 505, 527
XmiI GTMKAC 2 cut(s) 156, 470
XspI CTAG 1 cut(s) 176
ZrmI AGTACT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.