E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1685 |
| Acc65I | GGTACC | 2 cut(s) | 284, 1302 |
| AccB1I | GGYRCC | 2 cut(s) | 284, 1302 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 867 |
| AccBSI | CCGCTC | 1 cut(s) | 1320 |
| AciI | CCGC | 4 cut(s) | 5, 1006, 1147, 1320 |
| AclWI | GGATC | 7 cut(s) | 472, 1036, 1095, 1126, 1754, 1966, 1979 |
| AcsI | RAATTY | 3 cut(s) | 311, 756, 917 |
| AcuI | CTGAAG | 1 cut(s) | 1157 |
| AfaI | GTAC | 6 cut(s) | 286, 440, 511, 551, 836, 1304 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 294, 532, 535, 867, 946, 1837, 2047 |
| AflII | CTTAAG | 2 cut(s) | 1340, 1442 |
| AflIII | ACRYGT | 1 cut(s) | 1791 |
| AgeI | ACCGGT | 1 cut(s) | 1394 |
| AgsI | TTSAA | 4 cut(s) | 557, 922, 1603, 1987 |
| AjnI | CCWGG | 3 cut(s) | 27, 479, 750 |
| Alw21I | GWGCWC | 4 cut(s) | 189, 879, 1848, 1902 |
| Alw26I | GTCTC | 7 cut(s) | 8, 180, 456, 1540, 1559, 1562, 1907 |
| AlwI | GGATC | 7 cut(s) | 472, 1036, 1095, 1126, 1754, 1966, 1979 |
| Ama87I | CYCGRG | 1 cut(s) | 1823 |
| AoxI | GGCC | 3 cut(s) | 30, 924, 1369 |
| ApeKI | GCWGC | 2 cut(s) | 329, 1120 |
| ApoI | RAATTY | 3 cut(s) | 311, 756, 917 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1518, 1550 |
| AsiGI | ACCGGT | 1 cut(s) | 1394 |
| Asp718I | GGTACC | 2 cut(s) | 284, 1302 |
| AspLEI | GCGC | 1 cut(s) | 564 |
| AspS9I | GGNCC | 3 cut(s) | 538, 1369, 1891 |
| AsuHPI | GGTGA | 9 cut(s) | 403, 503, 1171, 1334, 1384, 1409, 1661, 1720, 2036 |
| AvaI | CYCGRG | 1 cut(s) | 1823 |
| AvaII | GGWCC | 2 cut(s) | 538, 1891 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 268, 301, 533, 566 |
| BamHI | GGATCC | 1 cut(s) | 1971 |
| BanI | GGYRCC | 2 cut(s) | 284, 1302 |
| BanII | GRGCYC | 3 cut(s) | 189, 952, 1848 |
| BauI | CACGAG | 1 cut(s) | 1259 |
| BbsI | GAAGAC | 3 cut(s) | 638, 1788, 1811 |
| Bbv12I | GWGCWC | 4 cut(s) | 189, 879, 1848, 1902 |
| BbvCI | CCTCAGC | 1 cut(s) | 2061 |
| BbvI | GCAGC | 2 cut(s) | 316, 1132 |
| BccI | CCATC | 3 cut(s) | 803, 935, 2071 |
| BceAI | ACGGC | 1 cut(s) | 993 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 36, 1513, 1547 |
| BciT130I | CCWGG | 3 cut(s) | 29, 481, 752 |
| BclI | TGATCA | 2 cut(s) | 57, 579 |
| BcoDI | GTCTC | 7 cut(s) | 8, 180, 456, 1540, 1559, 1562, 1907 |
| BfaI | CTAG | 1 cut(s) | 1433 |
| BfmI | CTRYAG | 1 cut(s) | 73 |
| BfrI | CTTAAG | 2 cut(s) | 1340, 1442 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 29 |
| BglII | AGATCT | 2 cut(s) | 87, 516 |
| BisI | GCNGC | 2 cut(s) | 330, 1121 |
| BlsI | GCNGC | 2 cut(s) | 331, 1122 |
| BmcAI | AGTACT | 1 cut(s) | 836 |
| Bme1390I | CCNGG | 3 cut(s) | 29, 481, 752 |
| Bme18I | GGWCC | 2 cut(s) | 538, 1891 |
| BmeT110I | CYCGRG | 1 cut(s) | 1823 |
| BmgT120I | GGNCC | 3 cut(s) | 538, 1369, 1891 |
| BmiI | GGNNCC | 5 cut(s) | 286, 304, 951, 1304, 1973 |
| BmrFI | CCNGG | 3 cut(s) | 29, 481, 752 |
| BmsI | GCATC | 6 cut(s) | 112, 1468, 1852, 2002, 2017, 2047 |
| BpiI | GAAGAC | 3 cut(s) | 638, 1788, 1811 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1217, 1249 |
| BpmI | CTGGAG | 1 cut(s) | 480 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1758, 2061 |
| BpuEI | CTTGAG | 7 cut(s) | 191, 438, 554, 566, 1229, 1493, 1541 |
| BsaI | GGTCTC | 1 cut(s) | 1559 |
| BsaJI | CCNNGG | 7 cut(s) | 280, 306, 324, 480, 1054, 1545, 1809 |
| BsaWI | WCCGGW | 1 cut(s) | 1394 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1250, 1280 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 294, 532, 535, 867, 946, 1837, 2047 |
| Bse118I | RCCGGY | 1 cut(s) | 1394 |
| Bse1I | ACTGG | 1 cut(s) | 1717 |
| Bse3DI | GCAATG | 2 cut(s) | 118, 288 |
| BseBI | CCWGG | 3 cut(s) | 29, 481, 752 |
| BseDI | CCNNGG | 7 cut(s) | 280, 306, 324, 480, 1054, 1545, 1809 |
| BseGI | GGATG | 9 cut(s) | 258, 670, 807, 927, 1143, 1365, 1645, 1986, 2056 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 294, 532, 535, 867, 946, 1837, 2047 |
| BseMI | GCAATG | 2 cut(s) | 118, 288 |
| BseNI | ACTGG | 1 cut(s) | 1717 |
| BseRI | GAGGAG | 3 cut(s) | 743, 1049, 1856 |
| BseXI | GCAGC | 2 cut(s) | 316, 1132 |
| BshFI | GGCC | 3 cut(s) | 32, 926, 1371 |
| BshNI | GGYRCC | 2 cut(s) | 284, 1302 |
| BshTI | ACCGGT | 1 cut(s) | 1394 |
| BsiHKAI | GWGCWC | 4 cut(s) | 189, 879, 1848, 1902 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1823 |
| BsiSI | CCGG | 1 cut(s) | 1395 |
| BslFI | GGGAC | 3 cut(s) | 497, 923, 1632 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 294, 532, 535, 867, 946, 1837, 2047 |
| BsmAI | GTCTC | 7 cut(s) | 8, 180, 456, 1540, 1559, 1562, 1907 |
| BsmBI | CGTCTC | 2 cut(s) | 8, 1540 |
| BsmFI | GGGAC | 3 cut(s) | 497, 923, 1632 |
| BsnI | GGCC | 3 cut(s) | 32, 926, 1371 |
| Bso31I | GGTCTC | 1 cut(s) | 1559 |
| BsoBI | CYCGRG | 1 cut(s) | 1823 |
| Bsp1286I | GDGCHC | 5 cut(s) | 189, 879, 952, 1848, 1902 |
| Bsp19I | CCATGG | 1 cut(s) | 1809 |
| BspACI | CCGC | 4 cut(s) | 5, 1006, 1147, 1320 |
| BspANI | GGCC | 3 cut(s) | 32, 926, 1371 |
| BspHI | TCATGA | 2 cut(s) | 763, 1749 |
| BspLI | GGNNCC | 5 cut(s) | 286, 304, 951, 1304, 1973 |
| BspPI | GGATC | 7 cut(s) | 472, 1036, 1095, 1126, 1754, 1966, 1979 |
| BspQI | GCTCTTC | 2 cut(s) | 552, 867 |
| BspT107I | GGYRCC | 2 cut(s) | 284, 1302 |
| BspTI | CTTAAG | 2 cut(s) | 1340, 1442 |
| BspTNI | GGTCTC | 1 cut(s) | 1559 |
| BsrBI | CCGCTC | 1 cut(s) | 1320 |
| BsrDI | GCAATG | 2 cut(s) | 118, 288 |
| BsrFI | RCCGGY | 1 cut(s) | 1394 |
| BsrI | ACTGG | 1 cut(s) | 1717 |
| BssAI | RCCGGY | 1 cut(s) | 1394 |
| BssECI | CCNNGG | 7 cut(s) | 280, 306, 324, 480, 1054, 1545, 1809 |
| BssSI | CACGAG | 1 cut(s) | 1259 |
| BssT1I | CCWWGG | 6 cut(s) | 280, 306, 324, 1054, 1545, 1809 |
| Bst2BI | CACGAG | 1 cut(s) | 1259 |
| Bst2UI | CCWGG | 3 cut(s) | 29, 481, 752 |
| Bst4CI | ACNGT | 5 cut(s) | 242, 475, 1031, 1655, 1682 |
| Bst6I | CTCTTC | 8 cut(s) | 385, 552, 678, 708, 810, 825, 867, 1590 |
| BstAFI | CTTAAG | 2 cut(s) | 1340, 1442 |
| BstC8I | GCNNGC | 3 cut(s) | 167, 1287, 1373 |
| BstDSI | CCRYGG | 1 cut(s) | 1809 |
| BstEII | GGTNACC | 1 cut(s) | 1649 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 533 |
| BstF5I | GGATG | 9 cut(s) | 258, 670, 807, 927, 1143, 1365, 1645, 1986, 2056 |
| BstHHI | GCGC | 1 cut(s) | 564 |
| BstMAI | GTCTC | 7 cut(s) | 8, 180, 456, 1540, 1559, 1562, 1907 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 29, 122, 329, 335, 1722 |
| BstNI | CCWGG | 3 cut(s) | 29, 481, 752 |
| BstNSI | RCATGY | 2 cut(s) | 1795, 2038 |
| BstPI | GGTNACC | 1 cut(s) | 1649 |
| BstSCI | CCNGG | 3 cut(s) | 27, 479, 750 |
| BstSFI | CTRYAG | 1 cut(s) | 73 |
| BstV1I | GCAGC | 2 cut(s) | 316, 1132 |
| BstV2I | GAAGAC | 3 cut(s) | 638, 1788, 1811 |
| BstX2I | RGATCY | 6 cut(s) | 87, 464, 516, 1087, 1131, 1971 |
| BstYI | RGATCY | 6 cut(s) | 87, 464, 516, 1087, 1131, 1971 |
| BsuRI | GGCC | 3 cut(s) | 32, 926, 1371 |
| BtgI | CCRYGG | 1 cut(s) | 1809 |
| BtsCI | GGATG | 9 cut(s) | 258, 670, 807, 927, 1143, 1365, 1645, 1986, 2056 |
| BtsIMutI | CAGTG | 5 cut(s) | 247, 480, 636, 1182, 1890 |
| Cac8I | GCNNGC | 3 cut(s) | 167, 1287, 1373 |
| CciI | TCATGA | 2 cut(s) | 763, 1749 |
| CfoI | GCGC | 1 cut(s) | 564 |
| Cfr10I | RCCGGY | 1 cut(s) | 1394 |
| Cfr13I | GGNCC | 3 cut(s) | 538, 1369, 1891 |
| Csp6I | GTAC | 6 cut(s) | 285, 439, 510, 550, 835, 1303 |
| CspAI | ACCGGT | 1 cut(s) | 1394 |
| CviQI | GTAC | 6 cut(s) | 285, 439, 510, 550, 835, 1303 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1685 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1685 |
| Eam1104I | CTCTTC | 8 cut(s) | 385, 552, 678, 708, 810, 825, 867, 1590 |
| EarI | CTCTTC | 8 cut(s) | 385, 552, 678, 708, 810, 825, 867, 1590 |
| EciI | GGCGGA | 2 cut(s) | 20, 995 |
| Ecl136II | GAGCTC | 2 cut(s) | 187, 1846 |
| Eco130I | CCWWGG | 6 cut(s) | 280, 306, 324, 1054, 1545, 1809 |
| Eco24I | GRGCYC | 3 cut(s) | 189, 952, 1848 |
| Eco31I | GGTCTC | 1 cut(s) | 1559 |
| Eco32I | GATATC | 1 cut(s) | 1381 |
| Eco47I | GGWCC | 2 cut(s) | 538, 1891 |
| Eco53kI | GAGCTC | 2 cut(s) | 187, 1846 |
| Eco57I | CTGAAG | 1 cut(s) | 1157 |
| Eco88I | CYCGRG | 1 cut(s) | 1823 |
| Eco91I | GGTNACC | 1 cut(s) | 1649 |
| EcoICRI | GAGCTC | 2 cut(s) | 187, 1846 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 533 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1891 |
| EcoO65I | GGTNACC | 1 cut(s) | 1649 |
| EcoRI | GAATTC | 2 cut(s) | 311, 917 |
| EcoRII | CCWGG | 3 cut(s) | 27, 479, 750 |
| EcoRV | GATATC | 1 cut(s) | 1381 |
| EcoT14I | CCWWGG | 6 cut(s) | 280, 306, 324, 1054, 1545, 1809 |
| EcoT38I | GRGCYC | 3 cut(s) | 189, 952, 1848 |
| ErhI | CCWWGG | 6 cut(s) | 280, 306, 324, 1054, 1545, 1809 |
| Esp3I | CGTCTC | 2 cut(s) | 8, 1540 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 74, 106, 864, 896 |
| FaqI | GGGAC | 3 cut(s) | 497, 923, 1632 |
| FbaI | TGATCA | 2 cut(s) | 57, 579 |
| Fnu4HI | GCNGC | 2 cut(s) | 330, 1121 |
| FokI | GGATG | 9 cut(s) | 265, 677, 814, 914, 1130, 1372, 1652, 1993, 2063 |
| FriOI | GRGCYC | 3 cut(s) | 189, 952, 1848 |
| Fsp4HI | GCNGC | 2 cut(s) | 330, 1121 |
| FspBI | CTAG | 1 cut(s) | 1433 |
| GlaI | GCGC | 1 cut(s) | 563 |
| GluI | GCNGC | 2 cut(s) | 330, 1121 |
| GsuI | CTGGAG | 1 cut(s) | 480 |
| HaeIII | GGCC | 3 cut(s) | 32, 926, 1371 |
| HapII | CCGG | 1 cut(s) | 1395 |
| HhaI | GCGC | 1 cut(s) | 564 |
| Hin6I | GCGC | 1 cut(s) | 562 |
| HinP1I | GCGC | 1 cut(s) | 562 |
| HincII | GTYRAC | 3 cut(s) | 274, 1078, 2089 |
| HindII | GTYRAC | 3 cut(s) | 274, 1078, 2089 |
| HindIII | AAGCTT | 5 cut(s) | 167, 1283, 1439, 1559, 1988 |
| HpaII | CCGG | 1 cut(s) | 1395 |
| HphI | GGTGA | 9 cut(s) | 403, 503, 1171, 1334, 1384, 1409, 1661, 1720, 2036 |
| Hpy166II | GTNNAC | 4 cut(s) | 274, 1078, 1182, 2089 |
| Hpy188I | TCNGA | 8 cut(s) | 121, 595, 655, 1084, 1195, 1253, 1678, 1850 |
| Hpy188III | TCNNGA | 9 cut(s) | 128, 300, 583, 764, 799, 1107, 1135, 1234, 1750 |
| Hpy8I | GTNNAC | 4 cut(s) | 274, 1078, 1182, 2089 |
| HpyCH4III | ACNGT | 5 cut(s) | 242, 475, 1031, 1655, 1682 |
| HpyCH4IV | ACGT | 1 cut(s) | 17 |
| HpyCH4V | TGCA | 5 cut(s) | 293, 1120, 1496, 1626, 1865 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 29, 122, 329, 335, 1722 |
| HpySE526I | ACGT | 1 cut(s) | 17 |
| HspAI | GCGC | 1 cut(s) | 562 |
| KpnI | GGTACC | 2 cut(s) | 288, 1306 |
| Ksp22I | TGATCA | 2 cut(s) | 57, 579 |
| LguI | GCTCTTC | 2 cut(s) | 552, 867 |
| LmnI | GCTCC | 3 cut(s) | 955, 1843, 1905 |
| Lsp1109I | GCAGC | 2 cut(s) | 316, 1132 |
| LweI | GCATC | 6 cut(s) | 112, 1468, 1852, 2002, 2017, 2047 |
| MaeI | CTAG | 1 cut(s) | 1433 |
| MaeII | ACGT | 1 cut(s) | 17 |
| MaeIII | GTNAC | 6 cut(s) | 409, 475, 1351, 1649, 1708, 1787 |
| MbiI | CCGCTC | 1 cut(s) | 1320 |
| MflI | RGATCY | 6 cut(s) | 87, 464, 516, 1087, 1131, 1971 |
| MhlI | GDGCHC | 5 cut(s) | 189, 879, 952, 1848, 1902 |
| MluCI | AATT | 4 cut(s) | 311, 612, 756, 917 |
| MlyI | GAGTC | 9 cut(s) | 182, 458, 479, 561, 862, 1073, 1235, 1259, 1614 |
| MseI | TTAA | 3 cut(s) | 780, 1341, 1443 |
| MslI | CAYNNNNRTG | 3 cut(s) | 426, 800, 1358 |
| MspA1I | CMGCKG | 1 cut(s) | 913 |
| MspCI | CTTAAG | 2 cut(s) | 1340, 1442 |
| MspI | CCGG | 1 cut(s) | 1395 |
| MspR9I | CCNGG | 3 cut(s) | 29, 481, 752 |
| MvaI | CCWGG | 3 cut(s) | 29, 481, 752 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 29, 122, 329, 335, 1722 |
| NcoI | CCATGG | 1 cut(s) | 1809 |
| NlaIV | GGNNCC | 5 cut(s) | 286, 304, 951, 1304, 1973 |
| NmeAIII | GCCGAG | 1 cut(s) | 58 |
| NmuCI | GTSAC | 5 cut(s) | 409, 475, 1351, 1649, 1708 |
| NspI | RCATGY | 2 cut(s) | 1795, 2038 |
| PagI | TCATGA | 2 cut(s) | 763, 1749 |
| PciI | ACATGT | 1 cut(s) | 1791 |
| PciSI | GCTCTTC | 2 cut(s) | 552, 867 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1257 |
| PfeI | GAWTC | 2 cut(s) | 1254, 1691 |
| PflFI | GACNNNGTC | 1 cut(s) | 1349 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 867 |
| PfoI | TCCNGGA | 1 cut(s) | 750 |
| PinAI | ACCGGT | 1 cut(s) | 1394 |
| PkrI | GCNGC | 2 cut(s) | 331, 1122 |
| PleI | GAGTC | 9 cut(s) | 181, 457, 479, 561, 861, 1073, 1234, 1259, 1614 |
| PpsI | GAGTC | 9 cut(s) | 181, 457, 479, 561, 861, 1073, 1234, 1259, 1614 |
| PpuMI | RGGWCCY | 1 cut(s) | 1891 |
| PscI | ACATGT | 1 cut(s) | 1791 |
| Psp124BI | GAGCTC | 2 cut(s) | 189, 1848 |
| Psp5II | RGGWCCY | 1 cut(s) | 1891 |
| Psp6I | CCWGG | 3 cut(s) | 27, 479, 750 |
| PspEI | GGTNACC | 1 cut(s) | 1649 |
| PspGI | CCWGG | 3 cut(s) | 27, 479, 750 |
| PspN4I | GGNNCC | 5 cut(s) | 286, 304, 951, 1304, 1973 |
| PspPI | GGNCC | 3 cut(s) | 538, 1369, 1891 |
| PspPPI | RGGWCCY | 1 cut(s) | 1891 |
| PsuI | RGATCY | 6 cut(s) | 87, 464, 516, 1087, 1131, 1971 |
| PsyI | GACNNNGTC | 1 cut(s) | 1349 |
| PvuII | CAGCTG | 1 cut(s) | 913 |
| RsaI | GTAC | 6 cut(s) | 286, 440, 511, 551, 836, 1304 |
| RsaNI | GTAC | 6 cut(s) | 285, 439, 510, 550, 835, 1303 |
| RseI | CAYNNNNRTG | 3 cut(s) | 426, 800, 1358 |
| SacI | GAGCTC | 2 cut(s) | 189, 1848 |
| SapI | GCTCTTC | 2 cut(s) | 552, 867 |
| SaqAI | TTAA | 3 cut(s) | 780, 1341, 1443 |
| SatI | GCNGC | 2 cut(s) | 330, 1121 |
| Sau96I | GGNCC | 3 cut(s) | 538, 1369, 1891 |
| ScaI | AGTACT | 1 cut(s) | 836 |
| SchI | GAGTC | 9 cut(s) | 182, 458, 479, 561, 862, 1073, 1235, 1259, 1614 |
| ScrFI | CCNGG | 3 cut(s) | 29, 481, 752 |
| SduI | GDGCHC | 5 cut(s) | 189, 879, 952, 1848, 1902 |
| SfaNI | GCATC | 6 cut(s) | 112, 1468, 1852, 2002, 2017, 2047 |
| SfcI | CTRYAG | 1 cut(s) | 73 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1394 |
| SinI | GGWCC | 2 cut(s) | 538, 1891 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 426, 800, 1358 |
| SmlI | CTYRAG | 9 cut(s) | 170, 453, 545, 569, 1244, 1340, 1442, 1508, 1556 |
| SmoI | CTYRAG | 9 cut(s) | 170, 453, 545, 569, 1244, 1340, 1442, 1508, 1556 |
| Sse9I | AATT | 4 cut(s) | 311, 612, 756, 917 |
| SsiI | CCGC | 4 cut(s) | 5, 1006, 1147, 1320 |
| SspI | AATATT | 1 cut(s) | 1102 |
| SspMI | CTAG | 1 cut(s) | 1433 |
| SstI | GAGCTC | 2 cut(s) | 189, 1848 |
| StyD4I | CCNGG | 3 cut(s) | 27, 479, 750 |
| StyI | CCWWGG | 6 cut(s) | 280, 306, 324, 1054, 1545, 1809 |
| TaaI | ACNGT | 5 cut(s) | 242, 475, 1031, 1655, 1682 |
| TaiI | ACGT | 1 cut(s) | 20 |
| TaqI | TCGA | 2 cut(s) | 1235, 1689 |
| TasI | AATT | 4 cut(s) | 311, 612, 756, 917 |
| TatI | WGTACW | 2 cut(s) | 438, 834 |
| TfiI | GAWTC | 2 cut(s) | 1254, 1691 |
| Tru1I | TTAA | 3 cut(s) | 780, 1341, 1443 |
| Tru9I | TTAA | 3 cut(s) | 780, 1341, 1443 |
| TscAI | CASTG | 5 cut(s) | 247, 480, 643, 1189, 1890 |
| TseFI | GTSAC | 5 cut(s) | 409, 475, 1351, 1649, 1708 |
| TseI | GCWGC | 2 cut(s) | 329, 1120 |
| Tsp45I | GTSAC | 5 cut(s) | 409, 475, 1351, 1649, 1708 |
| TspDTI | ATGAA | 9 cut(s) | 304, 372, 589, 681, 726, 780, 1376, 1459, 1766 |
| TspGWI | ACGGA | 1 cut(s) | 86 |
| TspRI | CASTG | 5 cut(s) | 247, 480, 643, 1189, 1890 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1349 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 867 |
| Vha464I | CTTAAG | 2 cut(s) | 1340, 1442 |
| VpaK11BI | GGWCC | 2 cut(s) | 538, 1891 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 533 |
| XapI | RAATTY | 3 cut(s) | 311, 756, 917 |
| XceI | RCATGY | 2 cut(s) | 1795, 2038 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 313, 618, 1807 |
| XspI | CTAG | 1 cut(s) | 1433 |
| ZrmI | AGTACT | 1 cut(s) | 836 |