Prupe.6G346400_v2.0.a1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000230
Physical Location & Seq
Forward (+)
29678539 .. 29679623
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G346400.1

Sequence Viewer

Length: 1008 bp
ATGAAGCTCTCGATTGGAAATCCACCGTTTGAGGTGTACGGCATTGCTGATACAGGCAGTGACCTAGTGTGGACACAATGTGTGCCATGTCATGGCTGCTACAAGCAGATTAATCCCAATGACCTTCCTTGTGATGCACAAGAATGTCATGCAATTGGCACTGGGACATGTTCACCTCAACACACCTGCAATTACACTTATGGGTATGGAGGTGCTGAAATGACCCAAGGAGTCTTGGCTAAGGAGACAATTACCATAACATCCACCTCAGGGGAGGCAACTTCCCTGAAAGACATTGTGTTTGGTTGTGGACATAACAATACTGGGACTTTTGATGAAAATGAAATGGGAATAGTTGGCCTGGGAGGAGGGCCCTTATCACTTGTTTCTCAATTGGGTCCTTTAGTTGGGGGCAAAAAATTCTCCTTCTGTTTGATGCCATTTCATACTGATCCTAGTGTTGAGAGCAAGATCAGTTTTGGGGAAGCTAAAGACAAGACCCCATGTTTTGTGACAGTTGAAGGAATTAGTGTTGGAGATAAGCTTGTGCCTTTTAGTTCATCAGGGAATGTTTCAAAAGGCAACACGTTCATGGACACAGGCGCACCTCCCACACTCATTCCACAAGATTTTTATGACCGCTTGGTAGCAGAAGTGAAAGGTCAAATTCCAATGACACCCGTAGAAAATGATCCAAGTTTGGGTTTTCAGCTTTGCTACAAAAGCAAAACCAATCTCAAAGGACCAATATTGACCGTACATTTTCAGGGTGCTGCTGATGTGAGGTTGTTACCAAAACAAACCTTCATTCCACCAAGAGAGGAGGTTTTCTGCTTTGCAATGCAGAATGTCACTAGTGATGGTGGTATTTATGGAAACTTTGCCCAGTCAGATTTCTTCATTAGTTATGACCTAGAAAGCAGCGTGGTGTTTTTTAAGCCAACTGATTGCACAAAAGAACAAGCTCTTTTCTTATTTTCTTTTCTTGGTAATAAAATAAAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

336

Amino Acids

36.01

Weight (kDa)

4.98

Isoelectric Point (pI)

22.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 92
AciI CCGC 1 cut(s) 640
AclWI GGATC 2 cut(s) 446, 686
AcsI RAATTY 2 cut(s) 419, 666
AdeI CACNNNGTG 1 cut(s) 80
AfaI GTAC 2 cut(s) 38, 759
AfiI CCNNNNNNNGG 4 cut(s) 92, 270, 407, 701
AflIII ACRYGT 2 cut(s) 167, 585
AgsI TTSAA 2 cut(s) 521, 576
AhlI ACTAGT 1 cut(s) 854
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 5 cut(s) 7, 488, 544, 712, 965
AluI AGCT 5 cut(s) 7, 488, 544, 712, 965
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 2 cut(s) 446, 686
AoxI GGCC 2 cut(s) 358, 371
ApaI GGGCCC 1 cut(s) 375
ApeKI GCWGC 3 cut(s) 96, 773, 921
ApoI RAATTY 2 cut(s) 419, 666
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
AseI ATTAAT 1 cut(s) 111
AspLEI GCGC 1 cut(s) 605
AspS9I GGNCC 4 cut(s) 371, 372, 398, 743
AsuHPI GGTGA 1 cut(s) 165
AvaII GGWCC 2 cut(s) 398, 743
AxyI CCTNAGG 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 375
BanII GRGCYC 1 cut(s) 375
BbvI GCAGC 3 cut(s) 83, 760, 933
BccI CCATC 1 cut(s) 854
BceAI ACGGC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 239
BcuI ACTAGT 1 cut(s) 854
BfaI CTAG 4 cut(s) 65, 456, 855, 914
BfuAI ACCTGC 1 cut(s) 194
BisI GCNGC 3 cut(s) 97, 774, 922
BlsI GCNGC 3 cut(s) 98, 775, 923
Bme1390I CCNGG 1 cut(s) 362
Bme18I GGWCC 2 cut(s) 398, 743
BmgT120I GGNCC 4 cut(s) 371, 372, 398, 743
BmiI GGNNCC 2 cut(s) 373, 399
BmrFI CCNGG 1 cut(s) 362
BmrI ACTGGG 3 cut(s) 171, 333, 880
BmsI GCATC 2 cut(s) 124, 426
BmuI ACTGGG 3 cut(s) 171, 333, 880
Bpu10I CCTNAGC 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 226, 361
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 270, 407, 701
Bse1I ACTGG 3 cut(s) 166, 328, 886
Bse21I CCTNAGG 1 cut(s) 268
Bse3DI GCAATG 2 cut(s) 42, 846
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 2 cut(s) 226, 361
BseGI GGATG 1 cut(s) 260
BseLI CCNNNNNNNGG 4 cut(s) 92, 270, 407, 701
BseMI GCAATG 2 cut(s) 42, 846
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 3 cut(s) 166, 328, 886
BseRI GAGGAG 2 cut(s) 381, 836
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 3 cut(s) 83, 760, 933
BshFI GGCC 2 cut(s) 360, 373
BslFI GGGAC 2 cut(s) 178, 340
BslI CCNNNNNNNGG 4 cut(s) 92, 270, 407, 701
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 2 cut(s) 178, 340
BsnI GGCC 2 cut(s) 360, 373
Bsp120I GGGCCC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 3 cut(s) 451, 471, 691
BspACI CCGC 1 cut(s) 640
BspANI GGCC 2 cut(s) 360, 373
BspCNI CTCAG 1 cut(s) 281
BspLI GGNNCC 2 cut(s) 373, 399
BspMI ACCTGC 1 cut(s) 194
BspPI GGATC 2 cut(s) 446, 686
BsrDI GCAATG 2 cut(s) 42, 846
BsrI ACTGG 3 cut(s) 166, 328, 886
BssECI CCNNGG 2 cut(s) 226, 361
BssMI GATC 3 cut(s) 451, 471, 691
BssT1I CCWWGG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 3 cut(s) 27, 517, 757
BstDEI CTNAG 2 cut(s) 240, 268
BstF5I GGATG 1 cut(s) 260
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 3 cut(s) 454, 474, 694
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 3 cut(s) 451, 471, 691
BstMWI GCNNNNNNNGC 1 cut(s) 723
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 375
BstV1I GCAGC 3 cut(s) 83, 760, 933
Bsu36I CCTNAGG 1 cut(s) 268
BsuRI GGCC 2 cut(s) 360, 373
BtsCI GGATG 1 cut(s) 260
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 2 cut(s) 64, 159
BveI ACCTGC 1 cut(s) 194
CfoI GCGC 1 cut(s) 605
Cfr13I GGNCC 4 cut(s) 371, 372, 398, 743
Csp6I GTAC 2 cut(s) 37, 758
CviAII CATG 6 cut(s) 87, 92, 149, 168, 504, 592
CviQI GTAC 2 cut(s) 37, 758
DdeI CTNAG 2 cut(s) 240, 268
DpnI GATC 3 cut(s) 453, 473, 693
DpnII GATC 3 cut(s) 451, 471, 691
DraIII CACNNNGTG 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 398, 743
Eco81I CCTNAGG 1 cut(s) 268
EcoO109I RGGNCCY 3 cut(s) 371, 372, 398
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 6 cut(s) 90, 95, 152, 171, 507, 595
FaqI GGGAC 2 cut(s) 178, 340
FatI CATG 6 cut(s) 86, 91, 148, 167, 503, 591
Fnu4HI GCNGC 3 cut(s) 97, 774, 922
FokI GGATG 1 cut(s) 247
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 3 cut(s) 97, 774, 922
FspBI CTAG 4 cut(s) 65, 456, 855, 914
GlaI GCGC 1 cut(s) 604
GluI GCNGC 3 cut(s) 97, 774, 922
HaeIII GGCC 2 cut(s) 360, 373
HhaI GCGC 1 cut(s) 605
Hin1II CATG 6 cut(s) 90, 95, 152, 171, 507, 595
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 1 cut(s) 231
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 4 cut(s) 37, 72, 173, 311
Hpy188I TCNGA 1 cut(s) 892
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 4 cut(s) 37, 72, 173, 311
HpyAV CCTTC 4 cut(s) 134, 436, 515, 814
HpyCH4III ACNGT 3 cut(s) 27, 517, 757
HpyCH4IV ACGT 1 cut(s) 587
HpyCH4V TGCA 6 cut(s) 137, 152, 189, 839, 844, 951
HpyF10VI GCNNNNNNNGC 1 cut(s) 723
HpyF3I CTNAG 2 cut(s) 240, 268
HpySE526I ACGT 1 cut(s) 587
Hsp92II CATG 6 cut(s) 90, 95, 152, 171, 507, 595
HspAI GCGC 1 cut(s) 603
Kzo9I GATC 3 cut(s) 451, 471, 691
Lsp1109I GCAGC 3 cut(s) 83, 760, 933
LweI GCATC 2 cut(s) 124, 426
MaeI CTAG 4 cut(s) 65, 456, 855, 914
MaeII ACGT 1 cut(s) 587
MaeIII GTNAC 4 cut(s) 59, 511, 789, 850
MalI GATC 3 cut(s) 453, 473, 693
MboI GATC 3 cut(s) 451, 471, 691
MboII GAAGA 1 cut(s) 889
MfeI CAATTG 2 cut(s) 153, 392
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 7 cut(s) 153, 190, 249, 392, 419, 525, 666
MlyI GAGTC 1 cut(s) 240
MmeI TCCRAC 1 cut(s) 514
MseI TTAA 3 cut(s) 111, 936, 1006
MslI CAYNNNNRTG 2 cut(s) 142, 590
MspR9I CCNGG 1 cut(s) 362
MunI CAATTG 2 cut(s) 153, 392
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 723
NdeII GATC 3 cut(s) 451, 471, 691
NlaIII CATG 6 cut(s) 90, 95, 152, 171, 507, 595
NlaIV GGNNCC 2 cut(s) 373, 399
NmuCI GTSAC 3 cut(s) 59, 511, 850
NspI RCATGY 1 cut(s) 171
PaqCI CACCTGC 1 cut(s) 194
PciI ACATGT 1 cut(s) 167
PflMI CCANNNNNTGG 1 cut(s) 92
PkrI GCNGC 3 cut(s) 98, 775, 923
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 398
PscI ACATGT 1 cut(s) 167
PshBI ATTAAT 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 373, 399
PspOMI GGGCCC 1 cut(s) 371
PspPI GGNCC 4 cut(s) 371, 372, 398, 743
PspPPI RGGWCCY 1 cut(s) 398
RsaI GTAC 2 cut(s) 38, 759
RsaNI GTAC 2 cut(s) 37, 758
RseI CAYNNNNRTG 2 cut(s) 142, 590
SaqAI TTAA 3 cut(s) 111, 936, 1006
SatI GCNGC 3 cut(s) 97, 774, 922
Sau3AI GATC 3 cut(s) 451, 471, 691
Sau96I GGNCC 4 cut(s) 371, 372, 398, 743
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 1 cut(s) 375
SfaNI GCATC 2 cut(s) 124, 426
SinI GGWCC 2 cut(s) 398, 743
SmiMI CAYNNNNRTG 2 cut(s) 142, 590
SpeI ACTAGT 1 cut(s) 854
Sse9I AATT 7 cut(s) 153, 190, 249, 392, 419, 525, 666
SsiI CCGC 1 cut(s) 640
SspI AATATT 1 cut(s) 750
SspMI CTAG 4 cut(s) 65, 456, 855, 914
StyD4I CCNGG 1 cut(s) 360
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 3 cut(s) 27, 517, 757
TaiI ACGT 1 cut(s) 590
TaqI TCGA 1 cut(s) 11
TasI AATT 7 cut(s) 153, 190, 249, 392, 419, 525, 666
Tru1I TTAA 3 cut(s) 111, 936, 1006
Tru9I TTAA 3 cut(s) 111, 936, 1006
TscAI CASTG 2 cut(s) 64, 166
TseFI GTSAC 3 cut(s) 59, 511, 850
TseI GCWGC 3 cut(s) 96, 773, 921
Tsp45I GTSAC 3 cut(s) 59, 511, 850
TspDTI ATGAA 8 cut(s) 17, 351, 357, 434, 549, 580, 796, 889
TspRI CASTG 2 cut(s) 64, 166
Van91I CCANNNNNTGG 1 cut(s) 92
VpaK11BI GGWCC 2 cut(s) 398, 743
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 2 cut(s) 419, 666
XceI RCATGY 1 cut(s) 171
XspI CTAG 4 cut(s) 65, 456, 855, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.