Rroxscaffold_6G00424780

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000230
Physical Location & Seq
Reverse (-)
45935701 .. 45937082
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00424780.1

Sequence Viewer

Length: 1308 bp
ATGGCTGCCTTTTGCGATTTACACAAGAATAATTATATTAGAGCAGTACTTGCTATTCTTTTATTTCATCTTATATATTATCCTGTTATAGCAGCAGCCAATATCGACAATAATTATGGTGGCTTCAGTGCGCATCTTATTCGAATAAATTTCAAAAATCCACCATTGCACAGACCCAGACACCACAAATCTGGTCGGCGTTTGATCGATCCAGACACGCCACAAGCAACACTACAAACTGATCCGAATATACAAGATGGACACCTTATGAAGTTCTCCATAGGAACCCCACCCTTCGATATCTATTTAGCAATTGATACAGGCAGCACTCTATTATGGACACATTGTCGGCCATGTCAAACTTGCAAAGAGACGAAACATGGCATGTTTGACCCGAAAAAATCCTCAACTTATAAGGATGTTCCTTGTTCTGCGGGTGAGTGCAAAATTCTTGGCCAGTTCGAACAAGATGATGGCTATTGCAAAGATCCTAAAGACACTTGCAGGTATTATTTCGAGTATCTAGATACAACATTCTCTACAGGTGTAATGGCAAAAGAAACAGTTACCTTAAATACCACATCAGGTAAGGCTGTAACCCTAAAAGATATTCTTATTGGGTGTGCGCAAGAGCAGAAAGGTGCTACTTACACGGACGATGAAATGGGAATAATTGGGCTTGGAGGAGGGAACTTGTCATTTGTTTCTCAAATTGCTCCCTATGCTGGAGGGAGTGAAGTTGTGGGTGAAGGGGTGGTGTCCACACCATTGCTCGAATCACGCGGGGATGCTTATATGATCGAAGTAGAAGGAATTACTATTGGAAATGATTTTGTTCCGTTTAACTCAACAGGGACGACAATGCTTGAAATGAGGATCGACTCTGGCACACCGAAAACATATATACCTCAAGATTTTTTTCACCGGGTGGCAACTCAGTTCATGAAGACATTTGATACAGTTGATTCGAAATTGGATTCTTTCATTTCAGATGACGAGAAATATGATGAAAGTCACCTTTGCATCGAGGGTACGACGATTCCAAAAGAACCAAAAGTGGCTATTAATTTCAAGGGTGGTCAAAAATTGCAGTTCACGGGGGAACAAATATTTTTTCCAAACAAAGATTTAAACTTAACCTGCTTTGGAATGTCGAACACCACTTCACAGGGCCTCACTGGTGACCATTATGGTATTTATGGAGGCAATATTCAGAGAAATTTCTTGATTGGTTTTGACCTAGATAAAAATGTGGTCTCCTTCAAGCCAACTAATTGCATAACAAATGGTGGTAGTGGTGCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

435

Amino Acids

47.98

Weight (kDa)

5.47

Isoelectric Point (pI)

29.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 89 - 240 2.9e-42 Xylanase inhibitor N-terminal
Asp PF00026 91 - 140 3.9e-08 Eukaryotic aspartyl protease
Asp PF00026 262 - 421 2.8e-06 Eukaryotic aspartyl protease
TAXi_C PF14541 264 - 422 2.3e-17 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
Acc16I TGCGCA 2 cut(s) 132, 627
Acc36I ACCTGC 2 cut(s) 495, 1148
AccII CGCG 1 cut(s) 783
AciI CCGC 2 cut(s) 434, 783
AclWI GGATC 4 cut(s) 203, 236, 482, 884
AcoI YGGCCR 2 cut(s) 350, 454
AcsI RAATTY 3 cut(s) 148, 447, 1219
AcuI CTGAAG 1 cut(s) 109
AdeI CACNNNGTG 1 cut(s) 928
AfaI GTAC 2 cut(s) 48, 1033
AfiI CCNNNNNNNGG 1 cut(s) 725
AgsI TTSAA 4 cut(s) 154, 869, 1072, 1264
AhdI GACNNNNNGTC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 365, 1261
AlwI GGATC 4 cut(s) 203, 236, 482, 884
AoxI GGCC 3 cut(s) 350, 454, 1171
ApeKI GCWGC 4 cut(s) 5, 92, 95, 324
ApoI RAATTY 3 cut(s) 148, 447, 1219
AseI ATTAAT 1 cut(s) 1065
AspLEI GCGC 2 cut(s) 133, 628
AspS9I GGNCC 1 cut(s) 1171
AsuC2I CCSGG 1 cut(s) 926
AsuHPI GGTGA 5 cut(s) 449, 758, 914, 1007, 1193
AsuII TTCGAA 3 cut(s) 142, 462, 968
BalI TGGCCA 1 cut(s) 456
BbsI GAAGAC 1 cut(s) 953
BbvI GCAGC 3 cut(s) 104, 107, 336
BccI CCATC 2 cut(s) 251, 467
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BcnI CCSGG 1 cut(s) 926
BcoDI GTCTC 2 cut(s) 365, 1261
BfaI CTAG 2 cut(s) 524, 1241
BfmI CTRYAG 1 cut(s) 540
BfuAI ACCTGC 2 cut(s) 495, 1148
BisI GCNGC 4 cut(s) 6, 93, 96, 325
BlsI GCNGC 4 cut(s) 7, 94, 97, 326
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 926
BmeRI GACNNNNNGTC 1 cut(s) 345
BmgT120I GGNCC 1 cut(s) 1171
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 926
BmsI GCATC 3 cut(s) 142, 778, 1032
BpiI GAAGAC 1 cut(s) 953
BpmI CTGGAG 1 cut(s) 747
Bpu14I TTCGAA 3 cut(s) 142, 462, 968
BpuEI CTTGAG 1 cut(s) 894
BpuMI CCSGG 1 cut(s) 926
Bsa29I ATCGAT 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 1261
Bsc4I CCNNNNNNNGG 1 cut(s) 725
Bse1I ACTGG 2 cut(s) 457, 1183
Bse3DI GCAATG 2 cut(s) 164, 767
BseCI ATCGAT 1 cut(s) 207
BseGI GGATG 2 cut(s) 424, 793
BseLI CCNNNNNNNGG 1 cut(s) 725
BseMI GCAATG 2 cut(s) 164, 767
BseMII CTCAG 1 cut(s) 950
BseNI ACTGG 2 cut(s) 457, 1183
BseRI GAGGAG 1 cut(s) 699
BseXI GCAGC 3 cut(s) 104, 107, 336
Bsh1236I CGCG 1 cut(s) 783
BshFI GGCC 3 cut(s) 352, 456, 1173
BshVI ATCGAT 1 cut(s) 207
BsiSI CCGG 1 cut(s) 925
BslFI GGGAC 1 cut(s) 868
BslI CCNNNNNNNGG 1 cut(s) 725
BsmAI GTCTC 2 cut(s) 365, 1261
BsmBI CGTCTC 1 cut(s) 365
BsmFI GGGAC 1 cut(s) 868
BsnI GGCC 3 cut(s) 352, 456, 1173
Bso31I GGTCTC 1 cut(s) 1261
Bsp119I TTCGAA 3 cut(s) 142, 462, 968
Bsp143I GATC 6 cut(s) 204, 208, 241, 487, 798, 876
BspACI CCGC 2 cut(s) 434, 783
BspANI GGCC 3 cut(s) 352, 456, 1173
BspCNI CTCAG 1 cut(s) 949
BspDI ATCGAT 1 cut(s) 207
BspFNI CGCG 1 cut(s) 783
BspHI TCATGA 1 cut(s) 942
BspLI GGNNCC 1 cut(s) 286
BspMI ACCTGC 2 cut(s) 495, 1148
BspPI GGATC 4 cut(s) 203, 236, 482, 884
BspT104I TTCGAA 3 cut(s) 142, 462, 968
BspTNI GGTCTC 1 cut(s) 1261
BsrDI GCAATG 2 cut(s) 164, 767
BsrI ACTGG 2 cut(s) 457, 1183
BssMI GATC 6 cut(s) 204, 208, 241, 487, 798, 876
Bst4CI ACNGT 2 cut(s) 565, 961
BstAPI GCANNNNNTGC 1 cut(s) 50
BstBI TTCGAA 3 cut(s) 142, 462, 968
BstDEI CTNAG 1 cut(s) 936
BstEII GGTNACC 1 cut(s) 1181
BstF5I GGATG 2 cut(s) 424, 793
BstFNI CGCG 1 cut(s) 783
BstHHI GCGC 2 cut(s) 133, 628
BstKTI GATC 6 cut(s) 207, 211, 244, 490, 801, 879
BstMAI GTCTC 2 cut(s) 365, 1261
BstMBI GATC 6 cut(s) 204, 208, 241, 487, 798, 876
BstMWI GCNNNNNNNGC 2 cut(s) 50, 722
BstNSI RCATGY 1 cut(s) 388
BstPI GGTNACC 1 cut(s) 1181
BstSCI CCNGG 1 cut(s) 924
BstSFI CTRYAG 1 cut(s) 540
BstUI CGCG 1 cut(s) 783
BstV1I GCAGC 3 cut(s) 104, 107, 336
BstV2I GAAGAC 1 cut(s) 953
BstX2I RGATCY 1 cut(s) 487
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 1 cut(s) 487
Bsu15I ATCGAT 1 cut(s) 207
BsuRI GGCC 3 cut(s) 352, 456, 1173
BsuTUI ATCGAT 1 cut(s) 207
BtsCI GGATG 2 cut(s) 424, 793
BtsIMutI CAGTG 2 cut(s) 133, 1176
BveI ACCTGC 2 cut(s) 495, 1148
CciI TCATGA 1 cut(s) 942
CfoI GCGC 2 cut(s) 133, 628
Cfr13I GGNCC 1 cut(s) 1171
ClaI ATCGAT 1 cut(s) 207
Csp6I GTAC 2 cut(s) 47, 1032
CviAII CATG 4 cut(s) 354, 380, 385, 943
CviQI GTAC 2 cut(s) 47, 1032
DdeI CTNAG 1 cut(s) 936
DpnI GATC 6 cut(s) 206, 210, 243, 489, 800, 878
DpnII GATC 6 cut(s) 204, 208, 241, 487, 798, 876
DraI TTTAAA 1 cut(s) 1131
DraIII CACNNNGTG 1 cut(s) 928
DriI GACNNNNNGTC 1 cut(s) 345
EaeI YGGCCR 2 cut(s) 350, 454
Eam1105I GACNNNNNGTC 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 1261
Eco32I GATATC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 109
Eco91I GGTNACC 1 cut(s) 1181
EcoO109I RGGNCCY 1 cut(s) 1171
EcoO65I GGTNACC 1 cut(s) 1181
EcoRV GATATC 1 cut(s) 301
Esp3I CGTCTC 1 cut(s) 365
FaeI CATG 4 cut(s) 357, 383, 388, 946
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FaqI GGGAC 1 cut(s) 868
FatI CATG 4 cut(s) 353, 379, 384, 942
FauI CCCGC 2 cut(s) 427, 776
Fnu4HI GCNGC 4 cut(s) 6, 93, 96, 325
FokI GGATG 2 cut(s) 431, 800
Fsp4HI GCNGC 4 cut(s) 6, 93, 96, 325
FspAI RTGCGCAY 1 cut(s) 132
FspBI CTAG 2 cut(s) 524, 1241
FspI TGCGCA 2 cut(s) 132, 627
GlaI GCGC 2 cut(s) 132, 627
GluI GCNGC 4 cut(s) 6, 93, 96, 325
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 3 cut(s) 352, 456, 1173
HapII CCGG 1 cut(s) 925
HhaI GCGC 2 cut(s) 133, 628
Hin1II CATG 4 cut(s) 357, 383, 388, 946
Hin6I GCGC 2 cut(s) 131, 626
HinP1I GCGC 2 cut(s) 131, 626
HinfI GANTC 5 cut(s) 776, 881, 965, 977, 1039
HpaII CCGG 1 cut(s) 925
HphI GGTGA 5 cut(s) 449, 758, 914, 1007, 1193
Hpy166II GTNNAC 2 cut(s) 762, 1095
Hpy188I TCNGA 3 cut(s) 246, 991, 1215
Hpy188III TCNNGA 5 cut(s) 212, 524, 911, 943, 1225
Hpy8I GTNNAC 2 cut(s) 762, 1095
Hpy99I CGWCG 1 cut(s) 1039
HpyAV CCTTC 4 cut(s) 304, 743, 803, 1270
HpyCH4III ACNGT 2 cut(s) 565, 961
HpyCH4V TGCA 8 cut(s) 169, 366, 444, 483, 504, 1023, 1090, 1278
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 722
HpyF3I CTNAG 1 cut(s) 936
Hsp92II CATG 4 cut(s) 357, 383, 388, 946
HspAI GCGC 2 cut(s) 131, 626
Kzo9I GATC 6 cut(s) 204, 208, 241, 487, 798, 876
LmnI GCTCC 1 cut(s) 721
Lsp1109I GCAGC 3 cut(s) 104, 107, 336
LweI GCATC 3 cut(s) 142, 778, 1032
MaeI CTAG 2 cut(s) 524, 1241
MaeIII GTNAC 4 cut(s) 565, 595, 1013, 1181
MalI GATC 6 cut(s) 206, 210, 243, 489, 800, 878
MboI GATC 6 cut(s) 204, 208, 241, 487, 798, 876
MboII GAAGA 1 cut(s) 958
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 1 cut(s) 487
MlsI TGGCCA 1 cut(s) 456
MluNI TGGCCA 1 cut(s) 456
MlyI GAGTC 1 cut(s) 875
MnlI CCTC 9 cut(s) 415, 677, 680, 722, 867, 918, 1021, 1184, 1196
Mox20I TGGCCA 1 cut(s) 456
MscI TGGCCA 1 cut(s) 456
MseI TTAA 6 cut(s) 572, 843, 1065, 1130, 1136, 1306
Msp20I TGGCCA 1 cut(s) 456
MspI CCGG 1 cut(s) 925
MspR9I CCNGG 1 cut(s) 926
MunI CAATTG 1 cut(s) 312
MvnI CGCG 1 cut(s) 783
MwoI GCNNNNNNNGC 2 cut(s) 50, 722
NciI CCSGG 1 cut(s) 926
NdeII GATC 6 cut(s) 204, 208, 241, 487, 798, 876
NlaIII CATG 4 cut(s) 357, 383, 388, 946
NlaIV GGNNCC 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 1013, 1181
NsbI TGCGCA 2 cut(s) 132, 627
NspI RCATGY 1 cut(s) 388
NspV TTCGAA 3 cut(s) 142, 462, 968
PagI TCATGA 1 cut(s) 942
PfeI GAWTC 4 cut(s) 776, 965, 977, 1039
PkrI GCNGC 4 cut(s) 7, 94, 97, 326
PleI GAGTC 1 cut(s) 875
PpsI GAGTC 1 cut(s) 875
PshBI ATTAAT 1 cut(s) 1065
PsiI TTATAA 1 cut(s) 414
PspEI GGTNACC 1 cut(s) 1181
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 1171
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 2 cut(s) 48, 1033
RsaNI GTAC 2 cut(s) 47, 1032
SaqAI TTAA 6 cut(s) 572, 843, 1065, 1130, 1136, 1306
SatI GCNGC 4 cut(s) 6, 93, 96, 325
Sau3AI GATC 6 cut(s) 204, 208, 241, 487, 798, 876
Sau96I GGNCC 1 cut(s) 1171
ScaI AGTACT 1 cut(s) 48
SchI GAGTC 1 cut(s) 875
ScrFI CCNGG 1 cut(s) 926
SfaNI GCATC 3 cut(s) 142, 778, 1032
SfcI CTRYAG 1 cut(s) 540
SfuI TTCGAA 3 cut(s) 142, 462, 968
SmlI CTYRAG 1 cut(s) 909
SmoI CTYRAG 1 cut(s) 909
SsiI CCGC 2 cut(s) 434, 783
SspI AATATT 2 cut(s) 1110, 1210
SspMI CTAG 2 cut(s) 524, 1241
StyD4I CCNGG 1 cut(s) 924
TaaI ACNGT 2 cut(s) 565, 961
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 4 cut(s) 776, 965, 977, 1039
Tru1I TTAA 6 cut(s) 572, 843, 1065, 1130, 1136, 1306
Tru9I TTAA 6 cut(s) 572, 843, 1065, 1130, 1136, 1306
TscAI CASTG 2 cut(s) 133, 1183
TseFI GTSAC 2 cut(s) 1013, 1181
TseI GCWGC 4 cut(s) 5, 92, 95, 324
Tsp45I GTSAC 2 cut(s) 1013, 1181
TspDTI ATGAA 7 cut(s) 56, 284, 675, 931, 959, 973, 1023
TspGWI ACGGA 2 cut(s) 668, 828
TspRI CASTG 2 cut(s) 133, 1183
VspI ATTAAT 1 cut(s) 1065
XapI RAATTY 3 cut(s) 148, 447, 1219
XbaI TCTAGA 1 cut(s) 523
XceI RCATGY 1 cut(s) 388
XspI CTAG 2 cut(s) 524, 1241
ZrmI AGTACT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.