RLG00000025720

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000230
Physical Location & Seq
Reverse (-)
47866277 .. 47867407
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025720

Sequence Viewer

Length: 1131 bp
ATGGGTCCAGACACGCCAGGATCACCAATGCAATTCGATGCAGATAGTGGCGCACATATTATGAAGTTCTCAATGGGAACCCCGCTCTTCGATATTTATGCAATTGTTGATACGGGCAGCGATCTACTATGGACGCAATGCCAGCCTTGTCAAGGTTGCTACAAGAGCAACTTTGGTGTTTTTGACCCGAGAAAATCCTCAACTCATAAGAACATTACTTGTCGGTCAAGAGACTGTAGACTCCTCGGCTCGTTCTTTGTACATGACTATTGTATACAAAAACCTACGGGAAATTGTGTTTACACCTATGAGTATGTAGACGGAACAGGCTCAGTGGGTCTGTTGGGTAAAGAAGCAGTTACCTTGACATCCACTACAGGTAAAGTTGTAGCCCTAAAAGATATTATTTTTGGGTGTGGGTATCAAAACAATGAATCTATTTCAAGTGGAAATACAATGGGAATGATTGGGCTTGGACGTGGGCCATTATCATTGATTTCTCAAATTGCTCCCTATGTTGGAGGCAAAAGATTCTCTTATTGCTTGGTGCAAGATCCCAAAATCCAAAGCAAGATCTATTTCGGAAATGGGAGTGAAGTTTTGGGTGAAGGAGTGGTGACAACCCCTATGGTCGATATTGAACCAAACGAGAAGAGTTATCTTGTCACAGTATTAGGAATTACCATCGAAGATGAGTTTCTTTCTTTTAACTCAACTGGGACATTACTCAAGAAAGGTAACATGAATGTTGACAGCGGTACATCTACATCACGTTTACCACAAGACTTTTTTGACCGAATGGTAACTCAGCTAAAAAAGGTAGTTAAATTGGAGTCATTCATGTATACCAAGGATATGATGAGTCTCCTTTGCTTTAACTCCACGACGCCTCCAAAGTTAACACCAATGGTTTTCCATTTTGAGGGTGATAGCAAACTGCCGGTGGCGATGGACCAATTATTTTCTGAAGAAATGCATGGGGCATTTTGCTTAGGAATTTCAAACATAACTAATGGGAATCAAGGTCTTTTCGGAGGTTCTCTACAGACAAATCTCTTGATTGGTTTTGACTCTGATAAAAAAGTGATATCCTTCAAGCCAACAAATTGCGTAGACTTTAACAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

377

Amino Acids

41.1

Weight (kDa)

5.78

Isoelectric Point (pI)

20.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 20 - 196 2.7e-48 Xylanase inhibitor N-terminal
Asp PF00026 21 - 365 9e-13 Eukaryotic aspartyl protease
TAXi_C PF14541 220 - 366 2.4e-17 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 85
AccI GTMKAC 5 cut(s) 238, 274, 318, 845, 1113
AciI CCGC 2 cut(s) 83, 756
AclWI GGATC 2 cut(s) 28, 548
AcsI RAATTY 1 cut(s) 996
AcuI CTGAAG 1 cut(s) 987
AcyI GRCGYC 1 cut(s) 887
AfaI GTAC 2 cut(s) 261, 760
AfiI CCNNNNNNNGG 3 cut(s) 152, 518, 922
AgsI TTSAA 4 cut(s) 444, 641, 1002, 1096
AjiI CACGTC 1 cut(s) 479
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 1 cut(s) 811
AluI AGCT 1 cut(s) 811
Alw26I GTCTC 2 cut(s) 225, 869
AlwI GGATC 2 cut(s) 28, 548
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 1 cut(s) 482
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 996
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 3 cut(s) 5, 482, 952
AsuHPI GGTGA 4 cut(s) 15, 617, 628, 938
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 2 cut(s) 5, 952
BbvI GCAGC 1 cut(s) 129
BccI CCATC 2 cut(s) 692, 943
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 225, 869
BfmI CTRYAG 3 cut(s) 235, 375, 1043
BglII AGATCT 1 cut(s) 573
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 2 cut(s) 5, 952
BmeT110I CYCGRG 1 cut(s) 187
BmgBI CACGTC 1 cut(s) 479
BmgT120I GGNCC 3 cut(s) 5, 482, 952
BmiI GGNNCC 2 cut(s) 6, 79
BmrFI CCNGG 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 726
BmsI GCATC 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 726
Bpu10I CCTNAGC 1 cut(s) 991
BpuEI CTTGAG 1 cut(s) 713
BsaHI GRCGYC 1 cut(s) 887
BsaJI CCNNGG 2 cut(s) 244, 849
BsaXI ACNNNNNCTCC 2 cut(s) 874, 904
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 518, 922
Bse118I RCCGGY 1 cut(s) 940
Bse1I ACTGG 1 cut(s) 721
Bse3DI GCAATG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 244, 849
BseGI GGATG 1 cut(s) 368
BseLI CCNNNNNNNGG 3 cut(s) 152, 518, 922
BseMI GCAATG 1 cut(s) 143
BseMII CTCAG 2 cut(s) 345, 821
BseNI ACTGG 1 cut(s) 721
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 1 cut(s) 484
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 1 cut(s) 941
BslFI GGGAC 1 cut(s) 733
BslI CCNNNNNNNGG 3 cut(s) 152, 518, 922
BsmAI GTCTC 2 cut(s) 225, 869
BsmFI GGGAC 1 cut(s) 733
BsnI GGCC 1 cut(s) 484
BsoBI CYCGRG 1 cut(s) 187
Bsp1407I TGTACA 1 cut(s) 259
Bsp143I GATC 4 cut(s) 20, 121, 553, 573
BspACI CCGC 2 cut(s) 83, 756
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 2 cut(s) 344, 820
BspLI GGNNCC 2 cut(s) 6, 79
BspPI GGATC 2 cut(s) 28, 548
BspQI GCTCTTC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 940
BsrGI TGTACA 1 cut(s) 259
BsrI ACTGG 1 cut(s) 721
BssAI RCCGGY 1 cut(s) 940
BssECI CCNNGG 2 cut(s) 244, 849
BssMI GATC 4 cut(s) 20, 121, 553, 573
BssNAI GTATAC 2 cut(s) 275, 846
BssNI GRCGYC 1 cut(s) 887
BssT1I CCWWGG 1 cut(s) 849
Bst1107I GTATAC 2 cut(s) 275, 846
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 2 cut(s) 236, 670
Bst6I CTCTTC 2 cut(s) 92, 647
BstACI GRCGYC 1 cut(s) 887
BstAUI TGTACA 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 3 cut(s) 331, 807, 991
BstENI CCTNNNNNAGG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 368
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 4 cut(s) 23, 124, 556, 576
BstMAI GTCTC 2 cut(s) 225, 869
BstMBI GATC 4 cut(s) 20, 121, 553, 573
BstMWI GCNNNNNNNGC 2 cut(s) 142, 165
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstSFI CTRYAG 3 cut(s) 235, 375, 1043
BstV1I GCAGC 1 cut(s) 129
BstX2I RGATCY 2 cut(s) 553, 573
BstYI RGATCY 2 cut(s) 553, 573
BstZ17I GTATAC 2 cut(s) 275, 846
BsuRI GGCC 1 cut(s) 484
BtgZI GCGATG 1 cut(s) 962
BtrI CACGTC 1 cut(s) 479
BtsCI GGATG 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 940
Cfr13I GGNCC 3 cut(s) 5, 482, 952
CseI GACGC 2 cut(s) 142, 895
Csp6I GTAC 2 cut(s) 260, 759
CviAII CATG 4 cut(s) 263, 742, 841, 977
CviJI RGCY 8 cut(s) 145, 249, 330, 392, 472, 484, 811, 1099
CviKI_1 RGCY 8 cut(s) 145, 249, 330, 392, 472, 484, 811, 1099
CviQI GTAC 2 cut(s) 260, 759
DdeI CTNAG 3 cut(s) 331, 807, 991
DpnI GATC 4 cut(s) 22, 123, 555, 575
DpnII GATC 4 cut(s) 20, 121, 553, 573
Eam1104I CTCTTC 2 cut(s) 92, 647
EarI CTCTTC 2 cut(s) 92, 647
Eco130I CCWWGG 1 cut(s) 849
Eco32I GATATC 1 cut(s) 1089
Eco47I GGWCC 2 cut(s) 5, 952
Eco57I CTGAAG 1 cut(s) 987
Eco88I CYCGRG 1 cut(s) 187
EcoNI CCTNNNNNAGG 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 16
EcoRV GATATC 1 cut(s) 1089
EcoT14I CCWWGG 1 cut(s) 849
EcoT22I ATGCAT 1 cut(s) 978
ErhI CCWWGG 1 cut(s) 849
FaeI CATG 4 cut(s) 266, 745, 844, 980
FalI AAGNNNNNCTT 4 cut(s) 155, 187, 520, 552
FaqI GGGAC 1 cut(s) 733
FatI CATG 4 cut(s) 262, 741, 840, 976
FauI CCCGC 1 cut(s) 90
FblI GTMKAC 5 cut(s) 238, 274, 318, 845, 1113
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 1 cut(s) 355
Fsp4HI GCNGC 1 cut(s) 118
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 118
HaeIII GGCC 1 cut(s) 484
HapII CCGG 1 cut(s) 941
HgaI GACGC 2 cut(s) 142, 895
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 887
Hin1II CATG 4 cut(s) 266, 745, 844, 980
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 2 cut(s) 751, 900
HindII GTYRAC 2 cut(s) 751, 900
HinfI GANTC 7 cut(s) 240, 434, 531, 833, 862, 1018, 1070
HpaI GTTAAC 1 cut(s) 900
HpaII CCGG 1 cut(s) 941
HphI GGTGA 4 cut(s) 15, 617, 628, 938
Hpy166II GTNNAC 9 cut(s) 239, 275, 301, 319, 751, 776, 846, 900, 1114
Hpy188I TCNGA 4 cut(s) 584, 967, 1034, 1075
Hpy188III TCNNGA 4 cut(s) 8, 228, 730, 1057
Hpy8I GTNNAC 9 cut(s) 239, 275, 301, 319, 751, 776, 846, 900, 1114
Hpy99I CGWCG 1 cut(s) 889
HpyAV CCTTC 2 cut(s) 602, 1102
HpyCH4III ACNGT 2 cut(s) 236, 670
HpyCH4IV ACGT 2 cut(s) 478, 772
HpyCH4V TGCA 5 cut(s) 31, 41, 101, 550, 976
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 165
HpyF3I CTNAG 3 cut(s) 331, 807, 991
HpySE526I ACGT 2 cut(s) 478, 772
Hsp92I GRCGYC 1 cut(s) 887
Hsp92II CATG 4 cut(s) 266, 745, 844, 980
HspAI GCGC 1 cut(s) 51
KspAI GTTAAC 1 cut(s) 900
Kzo9I GATC 4 cut(s) 20, 121, 553, 573
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 514
LpnPI CCDG 8 cut(s) 3, 21, 30, 155, 312, 363, 702, 954
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 1 cut(s) 28
MaeII ACGT 2 cut(s) 478, 772
MaeIII GTNAC 5 cut(s) 358, 616, 664, 737, 802
MalI GATC 4 cut(s) 22, 123, 555, 575
MbiI CCGCTC 1 cut(s) 85
MboI GATC 4 cut(s) 20, 121, 553, 573
MboII GAAGA 4 cut(s) 79, 664, 701, 980
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 2 cut(s) 553, 573
MluCI AATT 9 cut(s) 32, 102, 292, 504, 678, 827, 956, 996, 1105
MlyI GAGTC 4 cut(s) 234, 842, 871, 1064
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 6 cut(s) 208, 254, 515, 900, 916, 1028
Mph1103I ATGCAT 1 cut(s) 978
MseI TTAA 5 cut(s) 708, 825, 876, 899, 1119
MspA1I CMGCKG 1 cut(s) 756
MspI CCGG 1 cut(s) 941
MspR9I CCNGG 1 cut(s) 18
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 142, 165
NdeII GATC 4 cut(s) 20, 121, 553, 573
NlaIII CATG 4 cut(s) 266, 745, 844, 980
NlaIV GGNNCC 2 cut(s) 6, 79
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 2 cut(s) 616, 664
NsiI ATGCAT 1 cut(s) 978
PciSI GCTCTTC 1 cut(s) 92
PfeI GAWTC 3 cut(s) 434, 531, 1018
PkrI GCNGC 1 cut(s) 119
PleI GAGTC 4 cut(s) 234, 841, 870, 1064
PpsI GAGTC 4 cut(s) 234, 841, 870, 1064
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 2 cut(s) 6, 79
PspPI GGNCC 3 cut(s) 5, 482, 952
PsuI RGATCY 2 cut(s) 553, 573
RsaI GTAC 2 cut(s) 261, 760
RsaNI GTAC 2 cut(s) 260, 759
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 5 cut(s) 708, 825, 876, 899, 1119
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 4 cut(s) 20, 121, 553, 573
Sau96I GGNCC 3 cut(s) 5, 482, 952
SchI GAGTC 4 cut(s) 234, 842, 871, 1064
ScrFI CCNGG 1 cut(s) 18
SfaNI GCATC 1 cut(s) 28
SfcI CTRYAG 3 cut(s) 235, 375, 1043
SinI GGWCC 2 cut(s) 5, 952
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
Sse9I AATT 9 cut(s) 32, 102, 292, 504, 678, 827, 956, 996, 1105
SsiI CCGC 2 cut(s) 83, 756
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 849
TaaI ACNGT 2 cut(s) 236, 670
TaiI ACGT 2 cut(s) 481, 775
TaqI TCGA 4 cut(s) 36, 90, 633, 687
TaqII GACCGA 2 cut(s) 213, 810
TasI AATT 9 cut(s) 32, 102, 292, 504, 678, 827, 956, 996, 1105
TatI WGTACW 1 cut(s) 259
TfiI GAWTC 3 cut(s) 434, 531, 1018
Tru1I TTAA 5 cut(s) 708, 825, 876, 899, 1119
Tru9I TTAA 5 cut(s) 708, 825, 876, 899, 1119
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 2 cut(s) 616, 664
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 2 cut(s) 616, 664
TspDTI ATGAA 4 cut(s) 77, 447, 758, 829
TspGWI ACGGA 1 cut(s) 336
TspRI CASTG 1 cut(s) 339
VpaK11BI GGWCC 2 cut(s) 5, 952
XagI CCTNNNNNAGG 1 cut(s) 150
XapI RAATTY 1 cut(s) 996
XmiI GTMKAC 5 cut(s) 238, 274, 318, 845, 1113
Zsp2I ATGCAT 1 cut(s) 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.