Rorug03G0163700

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000230
Physical Location & Seq
Reverse (-)
13627914 .. 13628762
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0163700.1

Sequence Viewer

Length: 798 bp
ATGGCAGGTGTTGCCGGACGGGAGATGGGGGTCTTGGGACCTTCGATCTTGTCTTCTTTGCGGTGGTCGGGGCTTGGCATGATTCTTCTCTGCTCTCAGGCAGAGGCGCAGGGGGGGAGGAGGAATTCGGCGGCGGCGCAGGCTTGGAGCAAGGGGTCAGAGGCCAGATCGTGGCGGCGGCTTGCCATGGATCGTATGGCGCTGATCTCTGTTAGGAGGTGGGTCGATCGGCGATGTATACGGCTGTGGGTTCGGGCTCCCGGGAGGATGGGCACAGATGGGTGGAGCGATTTCGTTCCGAGGTGGAAGTGCTCGGCGATTCCATTCTTGTTTCTCGGTGGATTGGATTGGAGTGGATGTGTTTCCAGATCTGGATCCGGTCGACGACAGGCAGGTGAATCGGTGTGGCTTGTGGTGTTGAATGGGTACCTCTGGGGTGGTGAGCTCGAAGGGCAAGAGTTGTGGCGGTGGTCTGCCGGCGGGCAAATTGGAGAGAGGGAAGTTATTTGTCATAGCTTTGGTCTGGTGCTTGAAGGGATGGTCAATCATGGTCGAATAAATCGTCCCTACTCTTTTGAGCTAGGGTTTGGAGGTTCTGGTCGTGTTGTGGAGCCATCTATATGGTGTTACTCCTGGGAACAATATGTTATAATTTCGATGCTGGTTGGTTATCAACGGAAAGGTGGATTTCCCTTGCACGTCGTCTGGCGGTTTATGGACACGGTGTGGAAGAGGGTGGAGTGGTTCGTCTGGATGTTGGTGACGAGGTTGTATCGTGACGCTCGGGATTGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

265

Amino Acids

30.17

Weight (kDa)

10.03

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 650
AarI CACCTGC 1 cut(s) 383
Acc36I ACCTGC 1 cut(s) 383
Acc65I GGTACC 1 cut(s) 426
AccB1I GGYRCC 1 cut(s) 426
AccB7I CCANNNNNTGG 1 cut(s) 171
AccI GTMKAC 2 cut(s) 238, 382
AciI CCGC 8 cut(s) 61, 131, 134, 175, 178, 466, 480, 709
AclWI GGATC 3 cut(s) 198, 369, 382
AcsI RAATTY 1 cut(s) 124
AdeI CACNNNGTG 1 cut(s) 726
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 421, 533
AjiI CACGTC 1 cut(s) 700
AjnI CCWGG 1 cut(s) 632
AluBI AGCT 3 cut(s) 445, 516, 580
AluI AGCT 3 cut(s) 445, 516, 580
Alw21I GWGCWC 2 cut(s) 314, 447
AlwI GGATC 3 cut(s) 198, 369, 382
Ama87I CYCGRG 2 cut(s) 260, 783
AoxI GGCC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 124
ArsI GACNNNNNNTTYG 2 cut(s) 547, 579
Asp718I GGTACC 1 cut(s) 426
AspLEI GCGC 3 cut(s) 109, 139, 202
AspS9I GGNCC 1 cut(s) 38
AsuC2I CCSGG 2 cut(s) 261, 262
AsuHPI GGTGA 3 cut(s) 407, 452, 772
AvaI CYCGRG 2 cut(s) 260, 783
AvaII GGWCC 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 275
BamHI GGATCC 1 cut(s) 374
BanI GGYRCC 1 cut(s) 426
BanII GRGCYC 2 cut(s) 259, 447
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 2 cut(s) 314, 447
BccI CCATC 5 cut(s) 19, 262, 272, 532, 622
BceAI ACGGC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 381, 415
BciT130I CCWGG 1 cut(s) 634
BcnI CCSGG 2 cut(s) 261, 262
BfaI CTAG 1 cut(s) 581
BfoI RGCGCY 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 383
BglII AGATCT 1 cut(s) 368
BisI GCNGC 4 cut(s) 132, 135, 176, 179
BlsI GCNGC 4 cut(s) 133, 136, 177, 180
Bme1390I CCNGG 3 cut(s) 261, 262, 634
Bme18I GGWCC 1 cut(s) 38
BmeT110I CYCGRG 2 cut(s) 260, 783
BmgBI CACGTC 1 cut(s) 700
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 5 cut(s) 39, 258, 376, 428, 612
BmrFI CCNGG 3 cut(s) 261, 262, 634
BmsI GCATC 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 45
BpuMI CCSGG 2 cut(s) 261, 262
BsaBI GATNNNNATC 1 cut(s) 373
BsaJI CCNNGG 4 cut(s) 186, 260, 299, 633
BsaWI WCCGGW 1 cut(s) 377
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse118I RCCGGY 1 cut(s) 476
Bse8I GATNNNNATC 1 cut(s) 373
BseBI CCWGG 1 cut(s) 634
BseDI CCNNGG 4 cut(s) 186, 260, 299, 633
BseGI GGATG 4 cut(s) 273, 362, 543, 759
BseJI GATNNNNATC 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 133
BseSI GKGCMC 1 cut(s) 275
Bsh1285I CGRYCG 2 cut(s) 229, 382
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 426
BsiEI CGRYCG 2 cut(s) 229, 382
BsiHKAI GWGCWC 2 cut(s) 314, 447
BsiHKCI CYCGRG 2 cut(s) 260, 783
BsiSI CCGG 4 cut(s) 15, 261, 378, 477
BslFI GGGAC 2 cut(s) 51, 549
BslI CCNNNNNNNGG 1 cut(s) 171
BsmFI GGGAC 2 cut(s) 51, 549
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 2 cut(s) 260, 783
Bsp1286I GDGCHC 4 cut(s) 259, 275, 314, 447
Bsp143I GATC 7 cut(s) 45, 167, 190, 204, 226, 368, 374
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 8 cut(s) 61, 131, 134, 175, 178, 466, 480, 709
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 5 cut(s) 39, 258, 376, 428, 612
BspMI ACCTGC 1 cut(s) 383
BspPI GGATC 3 cut(s) 198, 369, 382
BspT107I GGYRCC 1 cut(s) 426
BsrFI RCCGGY 1 cut(s) 476
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 4 cut(s) 186, 260, 299, 633
BssMI GATC 7 cut(s) 45, 167, 190, 204, 226, 368, 374
BssNAI GTATAC 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 186
Bst1107I GTATAC 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 634
Bst4CI ACNGT 1 cut(s) 724
Bst6I CTCTTC 1 cut(s) 725
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 4 cut(s) 141, 183, 478, 482
BstDEI CTNAG 1 cut(s) 96
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 4 cut(s) 273, 362, 543, 759
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 3 cut(s) 109, 139, 202
BstKTI GATC 7 cut(s) 48, 170, 193, 207, 229, 371, 377
BstMBI GATC 7 cut(s) 45, 167, 190, 204, 226, 368, 374
BstMCI CGRYCG 2 cut(s) 229, 382
BstMWI GCNNNNNNNGC 3 cut(s) 11, 140, 451
BstNI CCWGG 1 cut(s) 634
BstSCI CCNGG 3 cut(s) 259, 260, 632
BstSLI GKGCMC 1 cut(s) 275
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 2 cut(s) 368, 374
BstXI CCANNNNNNTGG 1 cut(s) 621
BstYI RGATCY 2 cut(s) 368, 374
BstZ17I GTATAC 1 cut(s) 239
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 247
BtrI CACGTC 1 cut(s) 700
BtsCI GGATG 4 cut(s) 273, 362, 543, 759
BveI ACCTGC 1 cut(s) 383
Cac8I GCNNGC 4 cut(s) 141, 183, 478, 482
CfoI GCGC 3 cut(s) 109, 139, 202
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 1 cut(s) 38
Cfr9I CCCGGG 1 cut(s) 260
CseI GACGC 1 cut(s) 788
Csp6I GTAC 1 cut(s) 427
CspCI CAANNNNNGTGG 2 cut(s) 443, 478
CviAII CATG 3 cut(s) 79, 187, 548
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 1 cut(s) 96
DpnI GATC 7 cut(s) 47, 169, 192, 206, 228, 370, 376
DpnII GATC 7 cut(s) 45, 167, 190, 204, 226, 368, 374
DraIII CACNNNGTG 1 cut(s) 726
Eam1104I CTCTTC 1 cut(s) 725
EarI CTCTTC 1 cut(s) 725
Ecl136II GAGCTC 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 2 cut(s) 259, 447
Eco47I GGWCC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 445
Eco88I CYCGRG 2 cut(s) 260, 783
EcoICRI GAGCTC 1 cut(s) 445
EcoO109I RGGNCCY 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 632
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 2 cut(s) 259, 447
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 3 cut(s) 82, 190, 551
FaqI GGGAC 2 cut(s) 51, 549
FatI CATG 3 cut(s) 78, 186, 547
FauI CCCGC 1 cut(s) 473
FblI GTMKAC 2 cut(s) 238, 382
Fnu4HI GCNGC 4 cut(s) 132, 135, 176, 179
FokI GGATG 4 cut(s) 280, 369, 550, 766
FriOI GRGCYC 2 cut(s) 259, 447
Fsp4HI GCNGC 4 cut(s) 132, 135, 176, 179
FspBI CTAG 1 cut(s) 581
GlaI GCGC 3 cut(s) 108, 138, 201
GluI GCNGC 4 cut(s) 132, 135, 176, 179
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 1 cut(s) 164
HapII CCGG 4 cut(s) 15, 261, 378, 477
HgaI GACGC 1 cut(s) 788
HhaI GCGC 3 cut(s) 109, 139, 202
Hin1II CATG 3 cut(s) 82, 190, 551
Hin6I GCGC 3 cut(s) 107, 137, 200
HinP1I GCGC 3 cut(s) 107, 137, 200
HincII GTYRAC 1 cut(s) 383
HindII GTYRAC 1 cut(s) 383
HinfI GANTC 3 cut(s) 82, 319, 398
HpaII CCGG 4 cut(s) 15, 261, 378, 477
HphI GGTGA 3 cut(s) 407, 452, 772
Hpy166II GTNNAC 2 cut(s) 239, 383
Hpy188I TCNGA 2 cut(s) 160, 300
Hpy188III TCNNGA 5 cut(s) 366, 372, 751, 776, 785
Hpy8I GTNNAC 2 cut(s) 239, 383
Hpy99I CGWCG 2 cut(s) 387, 704
HpyAV CCTTC 3 cut(s) 51, 443, 527
HpyCH4III ACNGT 1 cut(s) 724
HpyCH4IV ACGT 1 cut(s) 699
HpyCH4V TGCA 1 cut(s) 697
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 140, 451
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 1 cut(s) 699
Hsp92II CATG 3 cut(s) 82, 190, 551
HspAI GCGC 3 cut(s) 107, 137, 200
KpnI GGTACC 1 cut(s) 430
KroI GCCGGC 1 cut(s) 476
KroNI GCCGGC 1 cut(s) 478
Kzo9I GATC 7 cut(s) 45, 167, 190, 204, 226, 368, 374
LmnI GCTCC 4 cut(s) 147, 262, 285, 610
LweI GCATC 1 cut(s) 648
MaeI CTAG 1 cut(s) 581
MaeII ACGT 1 cut(s) 699
MaeIII GTNAC 3 cut(s) 626, 760, 776
MalI GATC 7 cut(s) 47, 169, 192, 206, 228, 370, 376
MboI GATC 7 cut(s) 45, 167, 190, 204, 226, 368, 374
MboII GAAGA 3 cut(s) 45, 77, 742
MflI RGATCY 2 cut(s) 368, 374
MhlI GDGCHC 4 cut(s) 259, 275, 314, 447
MluCI AATT 3 cut(s) 124, 486, 651
MroNI GCCGGC 1 cut(s) 476
MslI CAYNNNNRTG 1 cut(s) 619
MspI CCGG 4 cut(s) 15, 261, 378, 477
MspR9I CCNGG 3 cut(s) 261, 262, 634
MvaI CCWGG 1 cut(s) 634
MwoI GCNNNNNNNGC 3 cut(s) 11, 140, 451
NaeI GCCGGC 1 cut(s) 478
NciI CCSGG 2 cut(s) 261, 262
NcoI CCATGG 1 cut(s) 186
NdeII GATC 7 cut(s) 45, 167, 190, 204, 226, 368, 374
NgoMIV GCCGGC 1 cut(s) 476
NlaIII CATG 3 cut(s) 82, 190, 551
NlaIV GGNNCC 5 cut(s) 39, 258, 376, 428, 612
NmeAIII GCCGAG 1 cut(s) 293
NmuCI GTSAC 2 cut(s) 760, 776
PaqCI CACCTGC 1 cut(s) 383
PcsI WCGNNNNNNNCGW 1 cut(s) 559
PdiI GCCGGC 1 cut(s) 478
PfeI GAWTC 3 cut(s) 82, 319, 398
PflMI CCANNNNNTGG 1 cut(s) 171
PkrI GCNGC 4 cut(s) 133, 136, 177, 180
Ple19I CGATCG 1 cut(s) 229
PpuMI RGGWCCY 1 cut(s) 38
PsiI TTATAA 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 632
PspGI CCWGG 1 cut(s) 632
PspN4I GGNNCC 5 cut(s) 39, 258, 376, 428, 612
PspPI GGNCC 1 cut(s) 38
PspPPI RGGWCCY 1 cut(s) 38
PsuI RGATCY 2 cut(s) 368, 374
PvuI CGATCG 1 cut(s) 229
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
RseI CAYNNNNRTG 1 cut(s) 619
SacI GAGCTC 1 cut(s) 447
SalI GTCGAC 1 cut(s) 381
SatI GCNGC 4 cut(s) 132, 135, 176, 179
Sau3AI GATC 7 cut(s) 45, 167, 190, 204, 226, 368, 374
Sau96I GGNCC 1 cut(s) 38
ScrFI CCNGG 3 cut(s) 261, 262, 634
SduI GDGCHC 4 cut(s) 259, 275, 314, 447
SfaNI GCATC 1 cut(s) 648
SinI GGWCC 1 cut(s) 38
SmaI CCCGGG 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 619
Sse9I AATT 3 cut(s) 124, 486, 651
SsiI CCGC 8 cut(s) 61, 131, 134, 175, 178, 466, 480, 709
SspMI CTAG 1 cut(s) 581
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 3 cut(s) 259, 260, 632
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 724
TaiI ACGT 1 cut(s) 702
TaqI TCGA 6 cut(s) 44, 225, 382, 447, 553, 656
TasI AATT 3 cut(s) 124, 486, 651
TauI GCSGC 4 cut(s) 134, 137, 178, 181
TfiI GAWTC 3 cut(s) 82, 319, 398
TseFI GTSAC 2 cut(s) 760, 776
Tsp45I GTSAC 2 cut(s) 760, 776
TspGWI ACGGA 1 cut(s) 691
TspMI CCCGGG 1 cut(s) 260
Van91I CCANNNNNTGG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 38
XapI RAATTY 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XmaI CCCGGG 1 cut(s) 260
XmiI GTMKAC 2 cut(s) 238, 382
XspI CTAG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.