RLG00000023683

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000230
Physical Location & Seq
Reverse (-)
27107050 .. 27108588
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023683

Sequence Viewer

Length: 450 bp
ATGGCATCAATGTTGGGTGCAAGGTTTTTCTCACGGAGGATGTCAAGCAGTGGAAGGATACCGAGAAAGGAGGAAAAAGCAGCAGAAAATGTTTACAAGAACTATGGAGTTAGCTTGGGATGCAACACTCTACTATGGACGCAATGCAAGCCGTATAAACGTTGCTACAACACTAAATATGCCATGTTCGACCCGAGAAAATCCTCAACATATAGGAACATTACTTGTTCTGCAAGGGAGTGTGGACTTGTCGATGATCAAAAACCACCAGGCCAATCACCAGAGTTTTGTAAAAAAATTCCTACAAGAAGGTGTACTTACCGTGTCGAGTATGGAGACACGTCATCTTCTGAAGGTGTATTGGCAAAAGAAACAATTGCCTTGACATCCAGGACAGGTAAGGTTATAACCCTAAAAGATAGTCATTGGGTGTGGGCATTTGAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

150

Amino Acids

17.01

Weight (kDa)

9.55

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 43 - 139 1.3e-17 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02620 FvH4_6g02640 FvH4_6g02690 FvH4_6g03060 FvH4_6g03100 FvH4_6g03360 FvH4_6g03370 FvH4_6g18770 FvH4_6g24220 FvH4_6g49710
malus_domestica MD04G1225600.v1.1 MD04G1227300.v1.1 MD12G1242600.v1.1 MD12G1242700.v1.1 MD12G1242800.v1.1
prunus_persica Prupe.2G103000_v2.0.a1 Prupe.6G344200_v2.0.a1 Prupe.6G344300_v2.0.a1 Prupe.6G344400_v2.0.a1 Prupe.6G346300_v2.0.a1 Prupe.6G346400_v2.0.a1
pyrus_communis pycom12g22170
rosa_chinensis RchiOBHm_Chr3g0450531 RchiOBHm_Chr3g0450541 RchiOBHm_Chr3g0450561 RchiOBHm_Chr3g0450681 RchiOBHm_Chr3g0450691 RchiOBHm_Chr3g0450711 RchiOBHm_Chr3g0451881 RchiOBHm_Chr3g0454771 RchiOBHm_Chr3g0473771 RchiOBHm_Chr3g0473781 RchiOBHm_Chr3g0477881 RchiOBHm_Chr6g0253861
rosa_laevigata RLG00000014956 RLG00000023682 RLG00000023683 RLG00000023985 RLG00000025416 RLG00000025641 RLG00000025642 RLG00000025708 RLG00000025710 RLG00000025711 RLG00000025720 RLG00000025722 RLG00000025723 RLG00000025733 RLG00000035252
rosa_multiflora Rmu_sc0034928.1_g000007
rosa_roxburghii Rroxscaffold_164G00436250 Rroxscaffold_1G00021590 Rroxscaffold_1G00029330 Rroxscaffold_1G00029340 Rroxscaffold_6G00403630 Rroxscaffold_6G00407810 Rroxscaffold_6G00424780 Rroxscaffold_6G00428220 Rroxscaffold_6G00428250 Rroxscaffold_6G00428270 Rroxscaffold_6G00428340 Rroxscaffold_6G00428350 Rroxscaffold_6G00428380 Rroxscaffold_7G00211410
rosa_rugosa Rorug01G0107600 Rorug01G0107600 Rorug02G0450900 Rorug02G0627600 Rorug02G0628400 Rorug02G0628500 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628600 Rorug02G0628700 Rorug02G0629600 Rorug02G0629700 Rorug02G0629800 Rorug02G0636700 Rorug03G0002400 Rorug03G0135400 Rorug03G0135500 Rorug03G0163700 Rorug05G0548500
rosa_samantha Rh2DG537800 Rh3AG029200 Rh3AG029300 Rh3AG029500 Rh3AG030500 Rh3AG030700 Rh3AG038600 Rh3AG062400 Rh3AG214300 Rh3BG029600 Rh3BG029700 Rh3BG029900 Rh3BG030800 Rh3BG031000 Rh3BG031200 Rh3BG039900 Rh3BG064300 Rh3BG214100 Rh3BG214300 Rh3BG247800 Rh3CG028500 Rh3CG028600 Rh3CG028800 Rh3CG029600 Rh3CG029800 Rh3CG030000 Rh3CG038400 Rh3CG063200 Rh3CG210800 Rh3CG211000 Rh3CG241900 Rh3DG029300 Rh3DG029400 Rh3DG029600 Rh3DG030400 Rh3DG030600 Rh3DG030900 Rh3DG039200 Rh3DG064000 Rh3DG210000 Rh3DG210200 Rh3DG241200 Rh6AG064000 Rh6BG000600 Rh6BG057900 Rh6CG008800 Rh6CG057800 Rh6DG009600 Rh6DG054800
rosa_wichuraiana Rw2G042600 Rw3G002250 Rw3G002270 Rw3G002340 Rw3G002350 Rw3G002370 Rw3G002890 Rw3G004860 Rw3G016980 Rw3G016990 Rw6G005680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AclI AACGTT 1 cut(s) 160
AcsI RAATTY 1 cut(s) 297
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 1 cut(s) 316
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 1 cut(s) 443
AjiI CACGTC 1 cut(s) 342
AjnI CCWGG 2 cut(s) 268, 389
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 330
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 270
AvaI CYCGRG 1 cut(s) 193
BbvI GCAGC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 2 cut(s) 270, 391
BciVI GTATCC 1 cut(s) 51
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 330
BfuI GTATCC 1 cut(s) 51
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 270, 391
BmeT110I CYCGRG 1 cut(s) 193
BmgBI CACGTC 1 cut(s) 342
BmrFI CCNGG 2 cut(s) 270, 391
BmsI GCATC 2 cut(s) 14, 110
Bse3DI GCAATG 1 cut(s) 149
BseBI CCWGG 2 cut(s) 270, 391
BseGI GGATG 3 cut(s) 45, 125, 386
BseMI GCAATG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 92
BshFI GGCC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 330
BsnI GGCC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 193
Bsp143I GATC 1 cut(s) 256
BspANI GGCC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 149
BssMI GATC 1 cut(s) 256
Bst2UI CCWGG 2 cut(s) 270, 391
Bst4CI ACNGT 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 149
BstF5I GGATG 3 cut(s) 45, 125, 386
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 2 cut(s) 120, 148
BstNI CCWGG 2 cut(s) 270, 391
BstSCI CCNGG 2 cut(s) 268, 389
BstV1I GCAGC 1 cut(s) 92
BsuI GTATCC 1 cut(s) 51
BsuRI GGCC 1 cut(s) 273
BtrI CACGTC 1 cut(s) 342
BtsCI GGATG 3 cut(s) 45, 125, 386
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 149
CseI GACGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 315
CviAII CATG 2 cut(s) 184, 447
CviJI RGCY 3 cut(s) 114, 151, 273
CviKI_1 RGCY 3 cut(s) 114, 151, 273
CviQI GTAC 1 cut(s) 315
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 268, 389
FaeI CATG 2 cut(s) 187, 450
FalI AAGNNNNNCTT 2 cut(s) 301, 333
FatI CATG 2 cut(s) 183, 446
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 3 cut(s) 52, 132, 373
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 273
HgaI GACGC 1 cut(s) 148
Hin1II CATG 2 cut(s) 187, 450
HphI GGTGA 1 cut(s) 270
Hpy166II GTNNAC 3 cut(s) 94, 245, 315
Hpy188I TCNGA 1 cut(s) 352
Hpy8I GTNNAC 3 cut(s) 94, 245, 315
HpyAV CCTTC 3 cut(s) 48, 303, 347
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 2 cut(s) 160, 341
HpyCH4V TGCA 4 cut(s) 20, 123, 147, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 148
HpySE526I ACGT 2 cut(s) 160, 341
Hsp92II CATG 2 cut(s) 187, 450
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 1 cut(s) 256
LpnPI CCDG 6 cut(s) 255, 282, 294, 376, 381, 403
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 2 cut(s) 14, 110
MaeII ACGT 2 cut(s) 160, 341
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 1 cut(s) 339
MfeI CAATTG 1 cut(s) 375
MluCI AATT 2 cut(s) 297, 375
MnlI CCTC 3 cut(s) 30, 64, 214
MspR9I CCNGG 2 cut(s) 270, 391
MunI CAATTG 1 cut(s) 375
MvaI CCWGG 2 cut(s) 270, 391
MwoI GCNNNNNNNGC 2 cut(s) 120, 148
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 187, 450
PfoI TCCNGGA 1 cut(s) 389
PkrI GCNGC 1 cut(s) 82
PsiI TTATAA 1 cut(s) 407
Psp1406I AACGTT 1 cut(s) 160
Psp6I CCWGG 2 cut(s) 268, 389
PspGI CCWGG 2 cut(s) 268, 389
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 270, 391
SetI ASST 8 cut(s) 26, 116, 163, 314, 344, 358, 400, 405
SfaNI GCATC 2 cut(s) 14, 110
Sse9I AATT 2 cut(s) 297, 375
StyD4I CCNGG 2 cut(s) 268, 389
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 2 cut(s) 163, 344
TaqI TCGA 3 cut(s) 189, 252, 327
TasI AATT 2 cut(s) 297, 375
TatI WGTACW 1 cut(s) 314
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 80
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 1 cut(s) 55
XapI RAATTY 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.