Rroxscaffold_6G00428360

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015230
Physical Location & Seq
Forward (+)
48776621 .. 48778167
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428360.1

Sequence Viewer

Length: 381 bp
ATGCAACAGGGTGGAGGATCTGAAACCGAGGTGACATGGGAGGACCAGCAGAACATCAACAAATTTGGGAGATTGAATAACCGGTTCCACGAGCTCGAGGACGAGATCAAAGTTGCAAAGGAATCAAATGATAACTTGGAGGATGCAGGGAATGAATTGATTCTCACAGATGAGGACGTGGTGCGGTTCCAGATTGGCGAAGTCTTTGCCCATGTTCCAAAAGAAGAAGTGGAGACCAGGATAGAAGAAATGAAAGAGGTAACTAGCAAAAGTTTAGAGAAACTCCATGAAGAGAAAGAATCTGTTCTTGCACAGATGTCCGAATTGAAGCAAATTTTATATGGAAAGTTCAAGGACTCCATCAATCTAGAGGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0008150 GO:0009987 GO:0016272 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0051087
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

126

Amino Acids

14.6

Weight (kDa)

4.49

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 16 - 119 2.5e-22 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015230)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08780
fragaria_vesca FvH4_6g02700
malus_domestica MD04G1225700.v1.1 MD12G1242900.v1.1
prunus_persica Prupe.6G344500_v2.0.a1
pyrus_communis pycom12g22190
rosa_chinensis RchiOBHm_Chr3g0450701
rosa_laevigata RLG00000025709
rosa_multiflora Rmu_sc0000078.1_g000033
rosa_roxburghii Rroxscaffold_6G00428360
rosa_rugosa Rorug02G0629800
rosa_samantha Rh3AG030600 Rh3BG031100 Rh3CG029900 Rh3DG030700
rosa_wichuraiana Rw3G002360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 25
AcsI RAATTY 2 cut(s) 62, 333
AgeI ACCGGT 1 cut(s) 81
AgsI TTSAA 3 cut(s) 76, 328, 352
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 95
ApoI RAATTY 2 cut(s) 62, 333
AsiGI ACCGGT 1 cut(s) 81
Asp700I GAANNNNTTC 2 cut(s) 159, 303
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 96
BauI CACGAG 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 96
BccI CCATC 1 cut(s) 368
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 2 cut(s) 264, 368
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 95
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 2 cut(s) 86, 188
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 133
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 81
Bse118I RCCGGY 1 cut(s) 81
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 148
BshTI ACCGGT 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 227
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 17, 105
BspACI CCGC 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 86, 188
BspPI GGATC 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 17, 105
BssSI CACGAG 1 cut(s) 89
Bst2BI CACGAG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 285
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 2 cut(s) 20, 108
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 2 cut(s) 17, 105
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 43
CspAI ACCGGT 1 cut(s) 81
CviAII CATG 3 cut(s) 36, 212, 287
CviJI RGCY 1 cut(s) 94
CviKI_1 RGCY 1 cut(s) 94
DpnI GATC 2 cut(s) 19, 107
DpnII GATC 2 cut(s) 17, 105
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 3 cut(s) 39, 215, 290
FaiI YATR 5 cut(s) 37, 213, 288, 340, 342
FatI CATG 3 cut(s) 35, 211, 286
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 96
FspBI CTAG 2 cut(s) 264, 368
HapII CCGG 1 cut(s) 82
Hin1II CATG 3 cut(s) 39, 215, 290
HinfI GANTC 4 cut(s) 122, 160, 299, 356
HpaII CCGG 1 cut(s) 82
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 22, 322
Hpy188III TCNNGA 2 cut(s) 190, 368
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 4 cut(s) 4, 116, 146, 311
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 3 cut(s) 39, 215, 290
Kzo9I GATC 2 cut(s) 17, 105
LpnPI CCDG 6 cut(s) 59, 95, 132, 203, 223, 250
LweI GCATC 1 cut(s) 133
MaeI CTAG 2 cut(s) 264, 368
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 31, 259
MalI GATC 2 cut(s) 19, 107
MboI GATC 2 cut(s) 17, 105
MboII GAAGA 3 cut(s) 236, 257, 302
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 4 cut(s) 62, 155, 323, 333
MlyI GAGTC 1 cut(s) 350
MnlI CCTC 9 cut(s) 8, 22, 34, 91, 133, 166, 250, 364, 367
MroXI GAANNNNTTC 2 cut(s) 159, 303
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
NdeII GATC 2 cut(s) 17, 105
NlaIII CATG 3 cut(s) 39, 215, 290
NlaIV GGNNCC 2 cut(s) 86, 188
NmuCI GTSAC 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 95
PdmI GAANNNNTTC 2 cut(s) 159, 303
PfeI GAWTC 3 cut(s) 122, 160, 299
PinAI ACCGGT 1 cut(s) 81
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 86, 188
PspPI GGNCC 1 cut(s) 43
PspXI VCTCGAGB 1 cut(s) 95
PsuI RGATCY 1 cut(s) 17
SacI GAGCTC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 17, 105
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 1 cut(s) 96
SetI ASST 4 cut(s) 33, 96, 180, 261
SfaNI GCATC 1 cut(s) 133
Sfr274I CTCGAG 1 cut(s) 95
SinI GGWCC 1 cut(s) 43
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 4 cut(s) 62, 155, 323, 333
SsiI CCGC 1 cut(s) 184
SspMI CTAG 2 cut(s) 264, 368
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 236
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 96
TasI AATT 4 cut(s) 62, 155, 323, 333
TfiI GAWTC 3 cut(s) 122, 160, 299
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 168, 266, 303
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 2 cut(s) 62, 333
XbaI TCTAGA 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 95
XmnI GAANNNNTTC 2 cut(s) 159, 303
XspI CTAG 2 cut(s) 264, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.