Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012749

Physical Location & Seq

Genomic Coordinates Reverse (-)

3118155 .. 3119815

Gene Structure 1661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGAGAAGACCGGACGAAGAATACGACTACTTGTTTAAAGTGGTTTTGATCGGAGACTCCGGTGTCGGCAAGTCTAATCTCCTCTCTAGATTCACTCGCAACGAGTTCTGCTTAGAATCCAAATCCACCATTGGTGTCGAATTCGCTACTCGTACTCTCCAAGTGGAAGGAAGGACTGTGAAAGCTCAGATATGGGACACGGCTGGGCAAGAACGATACAGAGCCATAACTAGCGCCTATTACAGAGGTGCACTTGGAGCTCTTTTGGTCTATGATGTCACCAAGCCAACAACGTTTGAGAATGTAAGCAGGTGGTTAAAAGAACTAAGAGACCATGCAGATTCCAATATAGTGATCATGTTGATTGGGAACAAGACAGATCTGAAGCATCTCAGAGCAGTTGCCACAGAGGATGCTCAGAGCTATGCAGAGAAAGAAGGCTTATCTTTCATCGAGACATCGGCTCTCGAGGCATTAAACGTAGAAAAGGCTTTTCAGACGATTCTCTCGGAGGTTTATAGGATCATCAGCAAGAAGTCGATATCTTCAGACCAGACAACTGCAAATGCCAACATCAAGGAAGGCCAAACAATTGATGTGGCTGCTACTTCTGAATCAAACGCTAAGAAGCCTTGTTGCTCATCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0007049 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0022402 GO:0031410 GO:0031982 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051301 GO:0061640 GO:0071944 GO:0097708 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

217

Amino Acids

24.11

Weight (kDa)

6.2

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 142	1.4e-12	ADP-ribosylation factor family
Ras	PF00071	14 - 174	2.2e-63	Ras family
Roc	PF08477	14 - 128	1e-34	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	14 - 120	2.9e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09630
fragaria_vesca	FvH4_5g28090
malus_domestica	MD08G1244300.v1.1 MD15G1439000.v1.1
prunus_persica	Prupe.1G581700_v2.0.a1
pyrus_communis	pycom08g21190 pycom15g38710
rosa_chinensis	RchiOBHm_Chr7g0220381
rosa_laevigata	RLG00000002224
rosa_multiflora	Rmu_sc0000099.1_g000015
rosa_roxburghii	Rroxscaffold_3G00239440
rosa_rugosa	Rorug07G0193400 Rorug07G0193500
rosa_samantha	Rh7AG334700 Rh7BG325600 Rh7CG352400 Rh7DG331500
rosa_wichuraiana	Rw7G028520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	303
AasI	GACNNNNNNGTC	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	303
AclI	AACGTT	1 cut(s)	296
AclWI	GGATC	1 cut(s)	533
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	2 cut(s)	407, 534
AfaI	GTAC	1 cut(s)	157
AluBI	AGCT	3 cut(s)	188, 263, 426
AluI	AGCT	3 cut(s)	188, 263, 426
Alw21I	GWGCWC	2 cut(s)	256, 265
Alw26I	GTCTC	3 cut(s)	51, 327, 452
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	586
ApaLI	GTGCAC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	605
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	16
Bbv12I	GWGCWC	2 cut(s)	256, 265
BbvI	GCAGC	1 cut(s)	592
BceAI	ACGGC	1 cut(s)	219
BclI	TGATCA	1 cut(s)	357
BcoDI	GTCTC	3 cut(s)	51, 327, 452
BfaI	CTAG	2 cut(s)	90, 234
BfoI	RGCGCY	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	303
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
BmeT110I	CYCGRG	1 cut(s)	470
BmsI	GCATC	2 cut(s)	400, 406
BpiI	GAAGAC	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	327
BsaWI	WCCGGW	2 cut(s)	13, 62
BseGI	GGATG	1 cut(s)	421
BseMII	CTCAG	3 cut(s)	203, 409, 434
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	592
BseYI	CCCAGC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	588
BsiHKAI	GWGCWC	2 cut(s)	256, 265
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	2 cut(s)	14, 63
BslFI	GGGAC	1 cut(s)	212
BsmAI	GTCTC	3 cut(s)	51, 327, 452
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	588
Bso31I	GGTCTC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	256, 265
Bsp143I	GATC	4 cut(s)	51, 357, 382, 525
BspANI	GGCC	1 cut(s)	588
BspCNI	CTCAG	3 cut(s)	202, 408, 433
BspMI	ACCTGC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	327
BssMI	GATC	4 cut(s)	51, 357, 382, 525
Bst4CI	ACNGT	1 cut(s)	181
BstDEI	CTNAG	6 cut(s)	115, 189, 329, 395, 420, 627
BstF5I	GGATG	1 cut(s)	421
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	4 cut(s)	54, 360, 385, 528
BstMAI	GTCTC	3 cut(s)	51, 327, 452
BstMBI	GATC	4 cut(s)	51, 357, 382, 525
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 473
BstSLI	GKGCMC	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	592
BstV2I	GAAGAC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	588
BtsCI	GGATG	1 cut(s)	421
BveI	ACCTGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	156
CspCI	CAANNNNNGTGG	2 cut(s)	582, 617
CviAII	CATG	2 cut(s)	338, 361
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	6 cut(s)	115, 189, 329, 395, 420, 627
DpnI	GATC	4 cut(s)	53, 359, 384, 527
DpnII	GATC	4 cut(s)	51, 357, 382, 525
DraI	TTTAAA	1 cut(s)	40
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	265
Eco31I	GGTCTC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	546
Eco53kI	GAGCTC	1 cut(s)	263
Eco57I	CTGAAG	2 cut(s)	407, 534
Eco88I	CYCGRG	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	546
EcoT38I	GRGCYC	1 cut(s)	265
FaeI	CATG	2 cut(s)	341, 364
FaiI	YATR	8 cut(s)	196, 230, 276, 339, 353, 362, 429, 522
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	337, 360
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	2 cut(s)	90, 234
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	1 cut(s)	606
GsaI	CCCAGC	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	588
HapII	CCGG	2 cut(s)	14, 63
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	341, 364
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HinfI	GANTC	6 cut(s)	59, 93, 119, 344, 505, 617
HpaII	CCGG	2 cut(s)	14, 63
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	9 cut(s)	56, 192, 387, 398, 423, 501, 514, 553, 616
Hpy188III	TCNNGA	4 cut(s)	90, 457, 470, 651
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	4 cut(s)	164, 168, 434, 578
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	296, 483
HpyCH4V	TGCA	4 cut(s)	254, 341, 431, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 473
HpyF3I	CTNAG	6 cut(s)	115, 189, 329, 395, 420, 627
HpySE526I	ACGT	2 cut(s)	296, 483
Hsp92II	CATG	2 cut(s)	341, 364
HspAI	GCGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	4 cut(s)	51, 357, 382, 525
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	5 cut(s)	27, 76, 192, 298, 569
Lsp1109I	GCAGC	1 cut(s)	592
LweI	GCATC	2 cut(s)	400, 406
MaeI	CTAG	2 cut(s)	90, 234
MaeII	ACGT	2 cut(s)	296, 483
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	4 cut(s)	53, 359, 384, 527
MboI	GATC	4 cut(s)	51, 357, 382, 525
MboII	GAAGA	3 cut(s)	21, 32, 540
MfeI	CAATTG	1 cut(s)	594
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	2 cut(s)	256, 265
MluCI	AATT	2 cut(s)	143, 594
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	5 cut(s)	95, 242, 406, 466, 508
MseI	TTAA	3 cut(s)	39, 320, 479
MspI	CCGG	2 cut(s)	14, 63
MunI	CAATTG	1 cut(s)	594
MwoI	GCNNNNNNNGC	2 cut(s)	260, 473
NdeII	GATC	4 cut(s)	51, 357, 382, 525
NlaIII	CATG	2 cut(s)	341, 364
NmuCI	GTSAC	1 cut(s)	280
PaeR7I	CTCGAG	1 cut(s)	470
PaqCI	CACCTGC	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	5 cut(s)	93, 119, 344, 505, 617
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	265
Psp1406I	AACGTT	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	265
SaqAI	TTAA	3 cut(s)	39, 320, 479
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	4 cut(s)	51, 357, 382, 525
SchI	GAGTC	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	256, 265
SetI	ASST	8 cut(s)	190, 253, 265, 299, 317, 428, 486, 519
SfaNI	GCATC	2 cut(s)	400, 406
Sfr274I	CTCGAG	1 cut(s)	470
SlaI	CTCGAG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	2 cut(s)	143, 594
SspMI	CTAG	2 cut(s)	90, 234
SstI	GAGCTC	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	2 cut(s)	299, 486
TaqI	TCGA	4 cut(s)	141, 456, 471, 542
TasI	AATT	2 cut(s)	143, 594
TfiI	GAWTC	5 cut(s)	93, 119, 344, 505, 617
Tru1I	TTAA	3 cut(s)	39, 320, 479
Tru9I	TTAA	3 cut(s)	39, 320, 479
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	605
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	442
VneI	GTGCAC	1 cut(s)	252
XapI	RAATTY	1 cut(s)	143
XbaI	TCTAGA	1 cut(s)	89
XhoI	CTCGAG	1 cut(s)	470
XspI	CTAG	2 cut(s)	90, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.