Rorug07G0193400

Ras-related protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
16445942 .. 16447597
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0193400.1

Sequence Viewer

Length: 1656 bp
ATGAGAAATTTCTTTTGGGTGGGAGACCCTTTAAAGTCTAGCTCGGCACTTGTGGCTTGGTCAACCTGTTGTCTTCCTCAAAATGAAGGTGGCCTGGGTCTTAAAAACATTGTCATCCTTAATCAAAGCCTTCTTCTTAAACGTTGCTGGGAGGTAGCCAATGGTGCTTCTCCTTCAGCCTCTTTTTTGAAGGGTCTTTTTGTTGATTCTGGTCTCACTCCTACTGTTGTTTACCGTAAGTCCTCCATTTGGACTGGTCTGAAAAAACTTTGGCCGACTCTTACTGAAAATGTTCATTGGTTAATCGGAAACGGTCTCAAGACTTCCTTTTGGAAGGACAATTGGGTTGGTCAACCTCTCTTTCAACTCTGTAATATTGATGTGTCACTTCTCCCTCATCTAAATGCAAGTGTCAAGGATTACATTGTTGATCATCGCTGGGTTCTGCCTCCTTTGTTTTCTCAACTTTTTCCTTCAGTGGCTGATTGCATTCATGAGATTGTCCTCCCCCTGGAGAATACTGAGGACCAAGTCATCTGGTCAGGGTCATCCTCAGGTAAACTTTCTGCCCATGATGCCTACGATTTCCTTCTCCCTCATCATCCTGTGGTTAACTGGGGAAAACGTATATGGCATCCTGCTATTCAACCAAGGAAAAGTTTGCTTACTTGGAAAGTGCTTCATGAGAAAGTCCCAGTTGATGCCTTGTTACAAAGGCGTGGTCACTCTCTCTGCTCGATGTGTTCTTTCTGCAATTCCTCTCCGGAAACGTTGGATCATCTTTTCTTGCAGTGTAGAATGGTCCTTCAAATTTGGGATTGGATGCTACACCTTTTCCATCTTCGTCCCCCAACTCCCCTCTCTATTCATGCTCTTATTTCTGTTGACTTCACCACTAGTATCCAACGCTCTGGTGTCACTCTTTGGAAACTTGTTTTTTGCAACCTACTTTGGTCTATTTGGCGAGAAAGAAACAAGGTGCGGTTTGACAACACGAGATTTTGTGCAATTCATCTCAAAAGAAGCTTCATCCTCTCCCTGCGTGACTCGGCTTCTCTAAGCTTCAAACCATGTACCACATACACCTCATCTCTGCCCATCTTTAATTTTTTGGGCCTCTCATCTTTAAACATTCGTGCTCCGAGATTTATTCCAGTCACTTGGGTCTGCCCCCCTCCTCCTTGGCTCAAAGCCAACACTGATGGTTCATTTCATGATGTCAACTCTGCTGGTTATGGTGGCATCTTCAGGGACAACCTTGGCCTCTTCCAGGGAGCTTTTTCTGCAAAGGTTTCTGTCCCTTGTGCCATTGATGCGGAGGTTCTCGCAGTGATCGAGGCTTTGAGACTCGCCTGGGTTCGCAATTGGACTCACATATGGATTGAAACGGATTCCTCTCTTGTGGTGACTTATTTTCGACATCCCCATATGGTTCCTTGGCGTTTAAGATCTCAATGGCTTAATTGTTTGCATTTCACTGGTCAGATTAACTTCCGGGTGTCTCACATCTTTAGAGAAGGCAATGCAGTAGCAGATCGTCTTGCTCGATATGGTGCTTCAATTGATGGGTATATGTGGTGGAACTCTCTACCTCCTTTCATCTCTGACCATTATGGTAGGGATTTGTCATCCCTGGTTTCCTACAGATTCAGATAA

Protein Analysis

551

Amino Acids

63.0

Weight (kDa)

9.23

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 189 - 272 5.2e-21 zinc-binding in reverse transcriptase
RVT_3 PF13456 399 - 517 2.5e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012749)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 763
AciI CCGC 2 cut(s) 982, 1316
AclI AACGTT 2 cut(s) 142, 770
AclWI GGATC 1 cut(s) 783
AcoI YGGCCR 1 cut(s) 272
AcsI RAATTY 2 cut(s) 7, 810
AcuI CTGAAG 3 cut(s) 159, 459, 1231
AfaI GTAC 1 cut(s) 1075
AfiI CCNNNNNNNGG 3 cut(s) 249, 511, 1270
AgsI TTSAA 7 cut(s) 190, 365, 647, 809, 1066, 1385, 1560
AhlI ACTAGT 1 cut(s) 896
AjnI CCWGG 5 cut(s) 93, 510, 1269, 1352, 1632
AjuI GAANNNNNNNTTGG 1 cut(s) 30
AluBI AGCT 4 cut(s) 42, 1026, 1062, 1277
AluI AGCT 4 cut(s) 42, 1026, 1062, 1277
Alw21I GWGCWC 1 cut(s) 1141
Alw26I GTCTC 5 cut(s) 18, 218, 320, 1339, 1506
AlwI GGATC 1 cut(s) 783
AlwNI CAGNNNCTG 1 cut(s) 482
Aor13HI TCCGGA 1 cut(s) 763
AoxI GGCC 4 cut(s) 91, 272, 1114, 1261
ApoI RAATTY 2 cut(s) 7, 810
ArsI GACNNNNNNTTYG 2 cut(s) 706, 738
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 3 cut(s) 526, 802, 1114
AsuC2I CCSGG 1 cut(s) 1496
AsuHPI GGTGA 2 cut(s) 883, 1417
AvaII GGWCC 2 cut(s) 526, 802
AxyI CCTNAGG 1 cut(s) 553
BauI CACGAG 1 cut(s) 994
BbsI GAAGAC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 1141
BccI CCATC 4 cut(s) 846, 1106, 1196, 1559
BciT130I CCWGG 5 cut(s) 95, 512, 1271, 1354, 1634
BciVI GTATCC 1 cut(s) 911
BclI TGATCA 1 cut(s) 430
BcnI CCSGG 1 cut(s) 1496
BcoDI GTCTC 5 cut(s) 18, 218, 320, 1339, 1506
BcuI ACTAGT 1 cut(s) 896
BfaI CTAG 2 cut(s) 39, 897
BfmI CTRYAG 1 cut(s) 1642
BfuI GTATCC 1 cut(s) 911
BglII AGATCT 1 cut(s) 1448
Bme1390I CCNGG 6 cut(s) 95, 512, 1271, 1354, 1496, 1634
Bme18I GGWCC 2 cut(s) 526, 802
BmgT120I GGNCC 3 cut(s) 526, 802, 1114
BmiI GGNNCC 1 cut(s) 1434
BmrFI CCNGG 6 cut(s) 95, 512, 1271, 1354, 1496, 1634
BmrI ACTGGG 2 cut(s) 625, 689
BmsI GCATC 6 cut(s) 565, 643, 691, 813, 1251, 1303
BmuI ACTGGG 2 cut(s) 625, 689
BpiI GAAGAC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 533
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 1496
BsaI GGTCTC 3 cut(s) 18, 218, 320
BsaJI CCNNGG 9 cut(s) 94, 510, 650, 1181, 1258, 1270, 1353, 1436, 1632
BsaWI WCCGGW 1 cut(s) 763
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 511, 1270
Bse1I ACTGG 5 cut(s) 259, 620, 695, 1154, 1483
Bse21I CCTNAGG 1 cut(s) 553
Bse3DI GCAATG 1 cut(s) 1528
BseAI TCCGGA 1 cut(s) 763
BseBI CCWGG 5 cut(s) 95, 512, 1271, 1354, 1634
BseDI CCNNGG 9 cut(s) 94, 510, 650, 1181, 1258, 1270, 1353, 1436, 1632
BseGI GGATG 8 cut(s) 114, 548, 601, 634, 828, 1029, 1420, 1628
BseLI CCNNNNNNNGG 3 cut(s) 249, 511, 1270
BseMI GCAATG 1 cut(s) 1528
BseMII CTCAG 2 cut(s) 513, 567
BseNI ACTGG 5 cut(s) 259, 620, 695, 1154, 1483
BseRI GAGGAG 1 cut(s) 1167
BseYI CCCAGC 2 cut(s) 147, 438
BshFI GGCC 4 cut(s) 93, 274, 1116, 1263
BsiHKAI GWGCWC 1 cut(s) 1141
BsiSI CCGG 2 cut(s) 764, 1495
BslFI GGGAC 4 cut(s) 677, 831, 1265, 1283
BslI CCNNNNNNNGG 3 cut(s) 249, 511, 1270
BsmAI GTCTC 5 cut(s) 18, 218, 320, 1339, 1506
BsmFI GGGAC 4 cut(s) 677, 831, 1265, 1283
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 4 cut(s) 93, 274, 1116, 1263
Bso31I GGTCTC 3 cut(s) 18, 218, 320
Bsp1286I GDGCHC 1 cut(s) 1141
Bsp13I TCCGGA 1 cut(s) 763
Bsp143I GATC 5 cut(s) 430, 775, 1332, 1448, 1534
BspACI CCGC 2 cut(s) 982, 1316
BspANI GGCC 4 cut(s) 93, 274, 1116, 1263
BspCNI CTCAG 2 cut(s) 514, 566
BspEI TCCGGA 1 cut(s) 763
BspHI TCATGA 3 cut(s) 493, 682, 1213
BspLI GGNNCC 1 cut(s) 1434
BspPI GGATC 1 cut(s) 783
BspTNI GGTCTC 3 cut(s) 18, 218, 320
BsrDI GCAATG 1 cut(s) 1528
BsrI ACTGG 5 cut(s) 259, 620, 695, 1154, 1483
BssECI CCNNGG 9 cut(s) 94, 510, 650, 1181, 1258, 1270, 1353, 1436, 1632
BssMI GATC 5 cut(s) 430, 775, 1332, 1448, 1534
BssSI CACGAG 1 cut(s) 994
BssT1I CCWWGG 4 cut(s) 650, 1181, 1258, 1436
Bst2BI CACGAG 1 cut(s) 994
Bst2UI CCWGG 5 cut(s) 95, 512, 1271, 1354, 1634
Bst4CI ACNGT 3 cut(s) 226, 236, 314
Bst6I CTCTTC 1 cut(s) 1271
BstDEI CTNAG 3 cut(s) 522, 553, 1058
BstENI CCTNNNNNAGG 1 cut(s) 1268
BstF5I GGATG 8 cut(s) 114, 548, 601, 634, 828, 1029, 1420, 1628
BstKTI GATC 5 cut(s) 433, 778, 1335, 1451, 1537
BstMAI GTCTC 5 cut(s) 18, 218, 320, 1339, 1506
BstMBI GATC 5 cut(s) 430, 775, 1332, 1448, 1534
BstMWI GCNNNNNNNGC 5 cut(s) 53, 164, 575, 1283, 1313
BstNI CCWGG 5 cut(s) 95, 512, 1271, 1354, 1634
BstSCI CCNGG 6 cut(s) 93, 510, 1269, 1352, 1494, 1632
BstSFI CTRYAG 1 cut(s) 1642
BstV2I GAAGAC 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 1448
BstXI CCANNNNNNTGG 2 cut(s) 911, 1161
BstYI RGATCY 1 cut(s) 1448
Bsu36I CCTNAGG 1 cut(s) 553
BsuI GTATCC 1 cut(s) 911
BsuRI GGCC 4 cut(s) 93, 274, 1116, 1263
BtgZI GCGATG 1 cut(s) 419
BtsCI GGATG 8 cut(s) 114, 548, 601, 634, 828, 1029, 1420, 1628
BtsI GCAGTG 2 cut(s) 797, 1335
BtsIMutI CAGTG 5 cut(s) 483, 797, 1197, 1335, 1476
CaiI CAGNNNCTG 1 cut(s) 482
CciI TCATGA 3 cut(s) 493, 682, 1213
Cfr13I GGNCC 3 cut(s) 526, 802, 1114
Csp6I GTAC 1 cut(s) 1074
CviAII CATG 6 cut(s) 494, 572, 683, 869, 1071, 1214
CviQI GTAC 1 cut(s) 1074
DdeI CTNAG 3 cut(s) 522, 553, 1058
DpnI GATC 5 cut(s) 432, 777, 1334, 1450, 1536
DpnII GATC 5 cut(s) 430, 775, 1332, 1448, 1534
DraI TTTAAA 2 cut(s) 33, 1128
EaeI YGGCCR 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 1271
EarI CTCTTC 1 cut(s) 1271
Eco130I CCWWGG 4 cut(s) 650, 1181, 1258, 1436
Eco31I GGTCTC 3 cut(s) 18, 218, 320
Eco47I GGWCC 2 cut(s) 526, 802
Eco57I CTGAAG 3 cut(s) 159, 459, 1231
Eco81I CCTNAGG 1 cut(s) 553
EcoNI CCTNNNNNAGG 1 cut(s) 1268
EcoRII CCWGG 5 cut(s) 93, 510, 1269, 1352, 1632
EcoT14I CCWWGG 4 cut(s) 650, 1181, 1258, 1436
ErhI CCWWGG 4 cut(s) 650, 1181, 1258, 1436
FaeI CATG 6 cut(s) 497, 575, 686, 872, 1074, 1217
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 4 cut(s) 677, 831, 1265, 1283
FatI CATG 6 cut(s) 493, 571, 682, 868, 1070, 1213
FauNDI CATATG 2 cut(s) 1376, 1428
FbaI TGATCA 1 cut(s) 430
FokI GGATG 8 cut(s) 101, 535, 588, 621, 835, 1016, 1407, 1615
FspBI CTAG 2 cut(s) 39, 897
GsaI CCCAGC 2 cut(s) 151, 442
GsuI CTGGAG 1 cut(s) 533
HaeIII GGCC 4 cut(s) 93, 274, 1116, 1263
HapII CCGG 2 cut(s) 764, 1495
Hin1II CATG 6 cut(s) 497, 575, 686, 872, 1074, 1217
HincII GTYRAC 5 cut(s) 63, 353, 613, 886, 1222
HindII GTYRAC 5 cut(s) 63, 353, 613, 886, 1222
HindIII AAGCTT 2 cut(s) 1024, 1060
HinfI GANTC 7 cut(s) 206, 277, 1046, 1347, 1369, 1391, 1647
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 2 cut(s) 764, 1495
HphI GGTGA 2 cut(s) 883, 1417
Hpy166II GTNNAC 7 cut(s) 63, 232, 353, 560, 613, 886, 1222
Hpy188I TCNGA 6 cut(s) 261, 308, 1143, 1485, 1606, 1652
Hpy188III TCNNGA 5 cut(s) 319, 494, 683, 764, 1214
Hpy8I GTNNAC 7 cut(s) 63, 232, 353, 560, 613, 886, 1222
HpyAV CCTTC 9 cut(s) 80, 140, 183, 184, 328, 483, 599, 815, 1511
HpyCH4III ACNGT 3 cut(s) 226, 236, 314
HpyCH4IV ACGT 3 cut(s) 142, 625, 770
HpyCH4V TGCA 9 cut(s) 407, 489, 753, 790, 942, 1007, 1286, 1471, 1526
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 164, 575, 1283, 1313
HpyF3I CTNAG 3 cut(s) 522, 553, 1058
HpySE526I ACGT 3 cut(s) 142, 625, 770
Hsp92II CATG 6 cut(s) 497, 575, 686, 872, 1074, 1217
Kpn2I TCCGGA 1 cut(s) 763
Ksp22I TGATCA 1 cut(s) 430
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 5 cut(s) 430, 775, 1332, 1448, 1534
LmnI GCTCC 2 cut(s) 1144, 1274
LweI GCATC 6 cut(s) 565, 643, 691, 813, 1251, 1303
MaeI CTAG 2 cut(s) 39, 897
MaeII ACGT 3 cut(s) 142, 625, 770
MaeIII GTNAC 7 cut(s) 384, 708, 722, 916, 1043, 1156, 1405
MalI GATC 5 cut(s) 432, 777, 1334, 1450, 1536
MboI GATC 5 cut(s) 430, 775, 1332, 1448, 1534
MboII GAAGA 5 cut(s) 65, 125, 833, 1237, 1258
MfeI CAATTG 3 cut(s) 340, 1363, 1560
MflI RGATCY 1 cut(s) 1448
MhlI GDGCHC 1 cut(s) 1141
MluCI AATT 9 cut(s) 7, 340, 754, 810, 1008, 1105, 1363, 1462, 1560
MlyI GAGTC 4 cut(s) 271, 1040, 1341, 1363
MmeI TCCRAC 2 cut(s) 753, 928
MroI TCCGGA 1 cut(s) 763
MroXI GAANNNNTTC 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 402
MspI CCGG 2 cut(s) 764, 1495
MspR9I CCNGG 6 cut(s) 95, 512, 1271, 1354, 1496, 1634
MunI CAATTG 3 cut(s) 340, 1363, 1560
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 5 cut(s) 95, 512, 1271, 1354, 1634
MwoI GCNNNNNNNGC 5 cut(s) 53, 164, 575, 1283, 1313
NciI CCSGG 1 cut(s) 1496
NdeI CATATG 2 cut(s) 1376, 1428
NdeII GATC 5 cut(s) 430, 775, 1332, 1448, 1534
NlaIII CATG 6 cut(s) 497, 575, 686, 872, 1074, 1217
NlaIV GGNNCC 1 cut(s) 1434
NmeAIII GCCGAG 2 cut(s) 23, 1028
NmuCI GTSAC 6 cut(s) 384, 722, 916, 1043, 1156, 1405
PagI TCATGA 3 cut(s) 493, 682, 1213
PcsI WCGNNNNNNNCGW 2 cut(s) 1332, 1543
PctI GAATGC 1 cut(s) 489
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 3 cut(s) 206, 1391, 1647
PflFI GACNNNGTC 1 cut(s) 530
PleI GAGTC 4 cut(s) 271, 1040, 1341, 1363
PpsI GAGTC 4 cut(s) 271, 1040, 1341, 1363
Psp1406I AACGTT 2 cut(s) 142, 770
Psp6I CCWGG 5 cut(s) 93, 510, 1269, 1352, 1632
PspFI CCCAGC 2 cut(s) 147, 438
PspGI CCWGG 5 cut(s) 93, 510, 1269, 1352, 1632
PspN4I GGNNCC 1 cut(s) 1434
PspPI GGNCC 3 cut(s) 526, 802, 1114
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 1 cut(s) 1448
PsyI GACNNNGTC 1 cut(s) 530
RsaI GTAC 1 cut(s) 1075
RsaNI GTAC 1 cut(s) 1074
RseI CAYNNNNRTG 1 cut(s) 402
Sau3AI GATC 5 cut(s) 430, 775, 1332, 1448, 1534
Sau96I GGNCC 3 cut(s) 526, 802, 1114
SchI GAGTC 4 cut(s) 271, 1040, 1341, 1363
ScrFI CCNGG 6 cut(s) 95, 512, 1271, 1354, 1496, 1634
SduI GDGCHC 1 cut(s) 1141
SfaNI GCATC 6 cut(s) 565, 643, 691, 813, 1251, 1303
SfcI CTRYAG 1 cut(s) 1642
SinI GGWCC 2 cut(s) 526, 802
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SpeI ACTAGT 1 cut(s) 896
Sse9I AATT 9 cut(s) 7, 340, 754, 810, 1008, 1105, 1363, 1462, 1560
SsiI CCGC 2 cut(s) 982, 1316
SspI AATATT 1 cut(s) 376
SspMI CTAG 2 cut(s) 39, 897
StyD4I CCNGG 6 cut(s) 93, 510, 1269, 1352, 1494, 1632
StyI CCWWGG 4 cut(s) 650, 1181, 1258, 1436
TaaI ACNGT 3 cut(s) 226, 236, 314
TaiI ACGT 3 cut(s) 145, 628, 773
TaqI TCGA 4 cut(s) 737, 1335, 1417, 1546
TasI AATT 9 cut(s) 7, 340, 754, 810, 1008, 1105, 1363, 1462, 1560
TfiI GAWTC 3 cut(s) 206, 1391, 1647
TscAI CASTG 5 cut(s) 483, 797, 1204, 1335, 1483
TseFI GTSAC 6 cut(s) 384, 722, 916, 1043, 1156, 1405
Tsp45I GTSAC 6 cut(s) 384, 722, 916, 1043, 1156, 1405
TspGWI ACGGA 1 cut(s) 1403
TspRI CASTG 5 cut(s) 483, 797, 1204, 1335, 1483
Tth111I GACNNNGTC 1 cut(s) 530
VpaK11BI GGWCC 2 cut(s) 526, 802
XagI CCTNNNNNAGG 1 cut(s) 1268
XapI RAATTY 2 cut(s) 7, 810
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 2 cut(s) 39, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.