Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012749

Physical Location & Seq

Genomic Coordinates Forward (+)

19316326 .. 19317988

Gene Structure 1663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCGAGGAGAGCGGAGGAGGAGTACGACTATTTGTTCAAAGTTGTATTAATCGGCGACTCGGGCGTTGGCAAATCCAACCTCCTCTCCCGATTCACTCGCAACGAGTTTTGTTTGGAGTCCAAGTCCACCATTGGCGTCGAATTCGCCACTCGCACTCTCCAGGTTGAGGGAAGAACTGTGAAAGCTCAGATATGGGACACAGCAGGACAGGAGAGATACAGAGCAATTACTAGTGCCTACTATAGAGGAGCCCTTGGAGCGTTACTTGTTTATGACGTAACAAAACCAACAACATTTGAAAATGTAAGCAGGTGGCTGAAGGAGTTGAGAGACCATGCTGACTCAAACATTGTGATCATGATGATTGGGAACAAGACAGATCTGAAGCATCTACGTGCGGTGGCCACAGAGGATGCCCAGGGTTATGCCGAAAGAGAAGGCCTTTCATTCATCGAGACATCTGCTCTTGAAGCAATAAATGTTGAGAAGGCTTTCCAGACAATTCTCGCAGAGATTTACCGGATTATCAGTAAAAAGACTCTTTCATCAGATGAGCCAACACCTGCAAGCATCAAAGAAGGGAAGACCATTGCTGTAACAGGAGGCCCAGAGGTCAATACAAAGAAGCCTTGCTGTTCTTCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0007049 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0022402 GO:0031410 GO:0031982 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051301 GO:0061640 GO:0071944 GO:0097708 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

217

Amino Acids

24.0

Weight (kDa)

6.76

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 132	2.3e-12	ADP-ribosylation factor family
Ras	PF00071	14 - 174	8.8e-63	Ras family
Roc	PF08477	14 - 128	1.7e-34	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	14 - 120	3e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09630
fragaria_vesca	FvH4_5g28090
malus_domestica	MD08G1244300.v1.1 MD15G1439000.v1.1
prunus_persica	Prupe.1G581700_v2.0.a1
pyrus_communis	pycom08g21190 pycom15g38710
rosa_chinensis	RchiOBHm_Chr7g0220381
rosa_laevigata	RLG00000002224
rosa_multiflora	Rmu_sc0000099.1_g000015
rosa_roxburghii	Rroxscaffold_3G00239440
rosa_rugosa	Rorug07G0193400 Rorug07G0193500
rosa_samantha	Rh7AG334700 Rh7BG325600 Rh7CG352400 Rh7DG331500
rosa_wichuraiana	Rw7G028520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	303, 574
Acc36I	ACCTGC	2 cut(s)	303, 574
AccBSI	CCGCTC	1 cut(s)	14
AciI	CCGC	2 cut(s)	14, 401
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	2 cut(s)	341, 407
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	4 cut(s)	40, 302, 473, 645
AhlI	ACTAGT	1 cut(s)	233
AjnI	CCWGG	2 cut(s)	162, 420
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
Alw26I	GTCTC	2 cut(s)	327, 452
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	3 cut(s)	405, 442, 607
ApoI	RAATTY	1 cut(s)	143
AseI	ATTAAT	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	608
AvaI	CYCGRG	1 cut(s)	61
BalI	TGGCCA	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	593
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	2 cut(s)	164, 422
BclI	TGATCA	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	327, 452
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	244
BfuAI	ACCTGC	2 cut(s)	303, 574
BglII	AGATCT	1 cut(s)	382
Bme1390I	CCNGG	2 cut(s)	164, 422
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	2 cut(s)	164, 422
BmsI	GCATC	3 cut(s)	400, 406, 582
BpiI	GAAGAC	1 cut(s)	593
BpmI	CTGGAG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	398
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	256, 420, 421
BsaWI	WCCGGW	1 cut(s)	522
BsaXI	ACNNNNNCTCC	6 cut(s)	8, 38, 71, 101, 110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	591
BseBI	CCWGG	2 cut(s)	164, 422
BseDI	CCNNGG	3 cut(s)	256, 420, 421
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	5 cut(s)	22, 32, 35, 74, 264
BshFI	GGCC	3 cut(s)	407, 444, 609
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	523
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	2 cut(s)	327, 452
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	407, 444, 609
Bso31I	GGTCTC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	2 cut(s)	357, 382
BspACI	CCGC	2 cut(s)	14, 401
BspANI	GGCC	3 cut(s)	407, 444, 609
BspCNI	CTCAG	1 cut(s)	202
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	253
BspMI	ACCTGC	2 cut(s)	303, 574
BspTNI	GGTCTC	1 cut(s)	327
BsrBI	CCGCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	591
BssECI	CCNNGG	3 cut(s)	256, 420, 421
BssMI	GATC	2 cut(s)	357, 382
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	164, 422
Bst4CI	ACNGT	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	2 cut(s)	360, 385
BstMAI	GTCTC	2 cut(s)	327, 452
BstMBI	GATC	2 cut(s)	357, 382
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 63, 260, 473
BstNI	CCWGG	2 cut(s)	164, 422
BstSCI	CCNGG	2 cut(s)	162, 420
BstSFI	CTRYAG	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	593
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	3 cut(s)	407, 444, 609
BtsCI	GGATG	1 cut(s)	421
BveI	ACCTGC	2 cut(s)	303, 574
Cac8I	GCNNGC	1 cut(s)	571
CciI	TCATGA	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	608
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	2 cut(s)	338, 361
CviJI	RGCY	9 cut(s)	188, 254, 319, 407, 444, 494, 559, 609, 631
CviKI_1	RGCY	9 cut(s)	188, 254, 319, 407, 444, 494, 559, 609, 631
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	359, 384
DpnII	GATC	2 cut(s)	357, 382
EaeI	YGGCCR	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	256
Eco147I	AGGCCT	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	327
Eco57I	CTGAAG	2 cut(s)	341, 407
Eco88I	CYCGRG	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	162, 420
EcoT14I	CCWWGG	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	341, 364
FaiI	YATR	6 cut(s)	196, 246, 276, 339, 362, 429
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	337, 360
FbaI	TGATCA	1 cut(s)	357
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	256
FspBI	CTAG	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	407, 444, 609
HapII	CCGG	1 cut(s)	523
HgaI	GACGC	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	341, 364
HinfI	GANTC	5 cut(s)	59, 93, 119, 344, 541
HpaII	CCGG	1 cut(s)	523
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	3 cut(s)	192, 387, 553
Hpy188III	TCNNGA	5 cut(s)	90, 361, 457, 470, 499
Hpy8I	GTNNAC	1 cut(s)	129
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	316, 434, 484, 575
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	279, 397
HpyCH4V	TGCA	1 cut(s)	569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 63, 260, 473
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	2 cut(s)	279, 397
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	341, 364
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	357, 382
LmnI	GCTCC	2 cut(s)	251, 260
LweI	GCATC	3 cut(s)	400, 406, 582
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	2 cut(s)	279, 397
MaeIII	GTNAC	3 cut(s)	264, 280, 598
MalI	GATC	2 cut(s)	359, 384
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	2 cut(s)	357, 382
MboII	GAAGA	3 cut(s)	186, 598, 633
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	256
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	3 cut(s)	143, 228, 504
MluNI	TGGCCA	1 cut(s)	407
MlyI	GAGTC	4 cut(s)	53, 128, 338, 535
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	9 cut(s)	10, 13, 92, 95, 163, 242, 406, 599, 607
Mox20I	TGGCCA	1 cut(s)	407
MroXI	GAANNNNTTC	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	396
Msp20I	TGGCCA	1 cut(s)	407
MspI	CCGG	1 cut(s)	523
MspR9I	CCNGG	2 cut(s)	164, 422
MvaI	CCWGG	2 cut(s)	164, 422
MwoI	GCNNNNNNNGC	4 cut(s)	11, 63, 260, 473
NdeII	GATC	2 cut(s)	357, 382
NlaIII	CATG	2 cut(s)	341, 364
NlaIV	GGNNCC	1 cut(s)	253
PagI	TCATGA	1 cut(s)	360
PaqCI	CACCTGC	2 cut(s)	303, 574
PasI	CCCWGGG	1 cut(s)	421
PceI	AGGCCT	1 cut(s)	444
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	93
PleI	GAGTC	4 cut(s)	53, 127, 338, 535
PpsI	GAGTC	4 cut(s)	53, 127, 338, 535
Ppu21I	YACGTR	1 cut(s)	398
PshBI	ATTAAT	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	162, 420
PspGI	CCWGG	2 cut(s)	162, 420
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	608
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	50
Sau3AI	GATC	2 cut(s)	357, 382
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	4 cut(s)	53, 128, 338, 535
ScrFI	CCNGG	2 cut(s)	164, 422
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	9 cut(s)	84, 168, 190, 282, 317, 400, 568, 618, 650
SfaNI	GCATC	3 cut(s)	400, 406, 582
SfcI	CTRYAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	396
SpeI	ACTAGT	1 cut(s)	233
Sse9I	AATT	3 cut(s)	143, 228, 504
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	2 cut(s)	14, 401
SspMI	CTAG	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	2 cut(s)	162, 420
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	2 cut(s)	282, 400
TaqI	TCGA	2 cut(s)	141, 456
TasI	AATT	3 cut(s)	143, 228, 504
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	438, 442, 537
VspI	ATTAAT	1 cut(s)	50
XapI	RAATTY	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.