Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012749

Physical Location & Seq

Genomic Coordinates Reverse (-)

32145501 .. 32147586

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG325600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCGAGGAGAGCGGACGAGGAATACGACTATTTGTTCAAAGTGGTATTAATCGGCGACTCGGGCGTTGGGAAATCCAACCTCCTCTCGCGATTCACTCGCAACGAGTTCTGTTTGGAATCCAAGTCCACCATTGGCGTCGAATTTGCCACACGTACTCTCCAGGTTGAGGGAAGAACTGTGAAAGCTCAGATATGGGACACAGCAGGACAGGAGAGATACAGAGCAATTACTAGTGCCTACTATAGAGGAGCTCTTGGAGCACTACTTGTTTACGATGTAACAAAACCAACAACATTTGAAAATGTAAGCCGGTGGCTGAAGGAATTGAGAGACCATGCTGACTCAAACATTGTGATCATGATGATTGGGAACAAGACTGATCTGAAGCATCTACGTGCCGTTGCCACAGAGGACGCCCAGGGTTATGCCGAAAGAGAAGGCCTTTCATTCATCGAAACATCTGCTCTTGAGGCAATTAATGTTGAGAAGGCTTTCCAGACAATTCTTGCCGAGATTTATCGGATTATTAGTAAAAAGACTCTTTCATCAGATGAGCCAACACCTGCAAGCATTAAAGAAGGGAAGACCATTGCTGTCACTGGAGGATCAGAGGTCAATACAAAGAAGCCTTGCTGTTCATCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0007049 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0022402 GO:0031410 GO:0031982 GO:0032506 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051301 GO:0061640 GO:0071944 GO:0097708 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.98

Weight (kDa)

6.76

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 132	2.5e-12	ADP-ribosylation factor family
Ras	PF00071	14 - 174	8.8e-63	Ras family
Roc	PF08477	14 - 128	1.7e-34	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	14 - 120	3e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09630
fragaria_vesca	FvH4_5g28090
malus_domestica	MD08G1244300.v1.1 MD15G1439000.v1.1
prunus_persica	Prupe.1G581700_v2.0.a1
pyrus_communis	pycom08g21190 pycom15g38710
rosa_chinensis	RchiOBHm_Chr7g0220381
rosa_laevigata	RLG00000002224
rosa_multiflora	Rmu_sc0000099.1_g000015
rosa_roxburghii	Rroxscaffold_3G00239440
rosa_rugosa	Rorug07G0193400 Rorug07G0193500
rosa_samantha	Rh7AG334700 Rh7BG325600 Rh7CG352400 Rh7DG331500
rosa_wichuraiana	Rw7G028520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	574
Acc36I	ACCTGC	1 cut(s)	574
AccBSI	CCGCTC	1 cut(s)	14
AccII	CGCG	1 cut(s)	91
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	616
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	2 cut(s)	341, 407
AcyI	GRCGYC	2 cut(s)	138, 417
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	40, 302
AhlI	ACTAGT	1 cut(s)	233
AjnI	CCWGG	2 cut(s)	162, 420
AluBI	AGCT	2 cut(s)	188, 254
AluI	AGCT	2 cut(s)	188, 254
Alw21I	GWGCWC	2 cut(s)	256, 265
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	616
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	1 cut(s)	442
ApoI	RAATTY	1 cut(s)	143
AseI	ATTAAT	2 cut(s)	50, 480
Asp700I	GAANNNNTTC	1 cut(s)	494
AvaI	CYCGRG	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	256, 265
BceAI	ACGGC	1 cut(s)	386
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	2 cut(s)	164, 422
BclI	TGATCA	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	327
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	574
Bme1390I	CCNGG	2 cut(s)	164, 422
BmeT110I	CYCGRG	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	164, 422
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	593
BpmI	CTGGAG	2 cut(s)	146, 624
BpuEI	CTTGAG	1 cut(s)	491
BsaAI	YACGTR	2 cut(s)	155, 398
BsaHI	GRCGYC	2 cut(s)	138, 417
BsaI	GGTCTC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	420, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	607
Bse3DI	GCAATG	1 cut(s)	591
BseBI	CCWGG	2 cut(s)	164, 422
BseDI	CCNNGG	2 cut(s)	420, 421
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	3 cut(s)	22, 74, 264
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	444
BsiHKAI	GWGCWC	2 cut(s)	256, 265
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	444
Bso31I	GGTCTC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	256, 265
Bsp143I	GATC	3 cut(s)	357, 382, 608
Bsp68I	TCGCGA	1 cut(s)	91
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	360
BspMI	ACCTGC	1 cut(s)	574
BspPI	GGATC	1 cut(s)	616
BspTNI	GGTCTC	1 cut(s)	327
BsrBI	CCGCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	591
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	607
BssAI	RCCGGY	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	420, 421
BssMI	GATC	3 cut(s)	357, 382, 608
BssNI	GRCGYC	2 cut(s)	138, 417
Bst2UI	CCWGG	2 cut(s)	164, 422
Bst4CI	ACNGT	1 cut(s)	181
BstACI	GRCGYC	2 cut(s)	138, 417
BstBAI	YACGTR	2 cut(s)	155, 398
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	91
BstKTI	GATC	3 cut(s)	360, 385, 611
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	3 cut(s)	357, 382, 608
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 63, 260, 473
BstNI	CCWGG	2 cut(s)	164, 422
BstSCI	CCNGG	2 cut(s)	162, 420
BstSFI	CTRYAG	1 cut(s)	244
BstUI	CGCG	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	593
BsuRI	GGCC	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	600
BtuMI	TCGCGA	1 cut(s)	91
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	571
CciI	TCATGA	1 cut(s)	360
Cfr10I	RCCGGY	1 cut(s)	312
CseI	GACGC	2 cut(s)	127, 425
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	2 cut(s)	338, 361
CviJI	RGCY	8 cut(s)	188, 254, 312, 319, 444, 494, 559, 631
CviKI_1	RGCY	8 cut(s)	188, 254, 312, 319, 444, 494, 559, 631
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	3 cut(s)	359, 384, 610
DpnII	GATC	3 cut(s)	357, 382, 608
Ecl136II	GAGCTC	1 cut(s)	254
Eco147I	AGGCCT	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	327
Eco53kI	GAGCTC	1 cut(s)	254
Eco57I	CTGAAG	2 cut(s)	341, 407
Eco88I	CYCGRG	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	162, 420
EcoT38I	GRGCYC	1 cut(s)	256
FaeI	CATG	2 cut(s)	341, 364
FaiI	YATR	5 cut(s)	196, 246, 339, 362, 429
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	337, 360
FbaI	TGATCA	1 cut(s)	357
FriOI	GRGCYC	1 cut(s)	256
FspBI	CTAG	1 cut(s)	234
GsuI	CTGGAG	2 cut(s)	146, 624
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	1 cut(s)	313
HgaI	GACGC	2 cut(s)	127, 425
Hin1I	GRCGYC	2 cut(s)	138, 417
Hin1II	CATG	2 cut(s)	341, 364
HinfI	GANTC	5 cut(s)	59, 93, 119, 344, 541
HpaII	CCGG	1 cut(s)	313
Hpy166II	GTNNAC	2 cut(s)	129, 274
Hpy188I	TCNGA	5 cut(s)	192, 387, 525, 553, 613
Hpy188III	TCNNGA	4 cut(s)	90, 361, 470, 499
Hpy8I	GTNNAC	2 cut(s)	129, 274
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	316, 434, 484, 575
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	154, 397
HpyCH4V	TGCA	1 cut(s)	569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 63, 260, 473
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	2 cut(s)	154, 397
Hsp92I	GRCGYC	2 cut(s)	138, 417
Hsp92II	CATG	2 cut(s)	341, 364
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	357, 382, 608
LmnI	GCTCC	2 cut(s)	251, 260
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	2 cut(s)	154, 397
MaeIII	GTNAC	2 cut(s)	280, 598
MalI	GATC	3 cut(s)	359, 384, 610
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	3 cut(s)	357, 382, 608
MboII	GAAGA	2 cut(s)	186, 598
MhlI	GDGCHC	2 cut(s)	256, 265
MluCI	AATT	5 cut(s)	143, 228, 326, 477, 504
MlyI	GAGTC	3 cut(s)	53, 338, 535
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	9 cut(s)	13, 92, 95, 163, 242, 406, 466, 599, 607
MroXI	GAANNNNTTC	1 cut(s)	494
MseI	TTAA	3 cut(s)	50, 480, 576
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	1 cut(s)	313
MspR9I	CCNGG	2 cut(s)	164, 422
MvaI	CCWGG	2 cut(s)	164, 422
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	4 cut(s)	11, 63, 260, 473
NdeII	GATC	3 cut(s)	357, 382, 608
NlaIII	CATG	2 cut(s)	341, 364
NmeAIII	GCCGAG	1 cut(s)	538
NmuCI	GTSAC	1 cut(s)	598
NruI	TCGCGA	1 cut(s)	91
PagI	TCATGA	1 cut(s)	360
PaqCI	CACCTGC	1 cut(s)	574
PasI	CCCWGGG	1 cut(s)	421
PceI	AGGCCT	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	93, 119
PleI	GAGTC	3 cut(s)	53, 338, 535
PpsI	GAGTC	3 cut(s)	53, 338, 535
Ppu21I	YACGTR	2 cut(s)	155, 398
PshBI	ATTAAT	2 cut(s)	50, 480
Psp124BI	GAGCTC	1 cut(s)	256
Psp6I	CCWGG	2 cut(s)	162, 420
PspGI	CCWGG	2 cut(s)	162, 420
RruI	TCGCGA	1 cut(s)	91
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	396
SacI	GAGCTC	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	50, 480, 576
Sau3AI	GATC	3 cut(s)	357, 382, 608
SchI	GAGTC	3 cut(s)	53, 338, 535
ScrFI	CCNGG	2 cut(s)	164, 422
SduI	GDGCHC	2 cut(s)	256, 265
SetI	ASST	9 cut(s)	84, 157, 168, 190, 256, 400, 568, 618, 650
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
SpeI	ACTAGT	1 cut(s)	233
Sse9I	AATT	5 cut(s)	143, 228, 326, 477, 504
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	234
SstI	GAGCTC	1 cut(s)	256
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	2 cut(s)	162, 420
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	2 cut(s)	157, 400
TaqI	TCGA	2 cut(s)	141, 456
TasI	AATT	5 cut(s)	143, 228, 326, 477, 504
TfiI	GAWTC	2 cut(s)	93, 119
Tru1I	TTAA	3 cut(s)	50, 480, 576
Tru9I	TTAA	3 cut(s)	50, 480, 576
TscAI	CASTG	1 cut(s)	607
TseFI	GTSAC	1 cut(s)	598
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	4 cut(s)	438, 442, 537, 630
TspRI	CASTG	1 cut(s)	607
VspI	ATTAAT	2 cut(s)	50, 480
XapI	RAATTY	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.