Rorug07G0193500

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012749
Physical Location & Seq
Reverse (-)
16450984 .. 16451969
986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0193500.1

Sequence Viewer

Length: 519 bp
ATGAACACCCACAGAATGAAAAAGAGCAGAGGTTTCAGGCTGAGAGTACACAAGCTGGTGAAGATCTTCAAATGGATAGTCCGACCCAGAAGAGAGCCGGCCCGGTACAAGAGGCTGGAATCCCCTACTGCCAGAACGTACAACCCCATTTCCAAATTCTTCACCTTGGCAAGGTCTCTTCGACGTGGAGCCAAGCAGCTGTGTTTTCCTAACTCGGGTTACATGCGGGTCGGGCAGGCTCCGGAGGAAGGGAAACCGGTGGTTGTCCCAAAGGGGCACATGGCGGTGTACGTGGGGGAGTCGGACGACGACACGCAGAGGTACTTGGTGCCTGTCATATACTTCAATCACCCGCTGTTTGGGGAGCTGTTGAAGGAGGCCGAGAAGGTTTACGGGTTCAACCATCCGGGTCGGATCGTCATACCTTGTGGGGCTTCGGAGTTTGAGAAGGTGCAGATGAGGATCGCTGCAGGGGACCATTGTCAACGGCAGAGGAGGAATAGTAACCGTCGCTATTAG

Protein Analysis

172

Amino Acids

20.12

Weight (kDa)

10.54

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 71 - 151 2.8e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012749)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09630
fragaria_vesca FvH4_5g28090
malus_domestica MD08G1244300.v1.1 MD15G1439000.v1.1
prunus_persica Prupe.1G581700_v2.0.a1
pyrus_communis pycom08g21190 pycom15g38710
rosa_chinensis RchiOBHm_Chr7g0220381
rosa_laevigata RLG00000002224
rosa_multiflora Rmu_sc0000099.1_g000015
rosa_roxburghii Rroxscaffold_3G00239440
rosa_rugosa Rorug07G0193400 Rorug07G0193500
rosa_samantha Rh7AG334700 Rh7BG325600 Rh7CG352400 Rh7DG331500
rosa_wichuraiana Rw7G028520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 3 cut(s) 226, 284, 353
AclWI GGATC 2 cut(s) 422, 470
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 5 cut(s) 48, 107, 140, 290, 323
AfiI CCNNNNNNNGG 4 cut(s) 171, 215, 248, 359
AgeI ACCGGT 1 cut(s) 256
AgsI TTSAA 4 cut(s) 70, 346, 373, 400
AjiI CACGTC 1 cut(s) 185
AluBI AGCT 3 cut(s) 55, 199, 367
AluI AGCT 3 cut(s) 55, 199, 367
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 2 cut(s) 422, 470
Ama87I CYCGRG 1 cut(s) 214
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 2 cut(s) 99, 378
ApeKI GCWGC 2 cut(s) 196, 467
ApoI RAATTY 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AsiGI ACCGGT 1 cut(s) 256
Asp700I GAANNNNTTC 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 100, 475
AsuC2I CCSGG 2 cut(s) 103, 408
AsuHPI GGTGA 3 cut(s) 70, 154, 341
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 1 cut(s) 475
BaeGI GKGCMC 1 cut(s) 279
BanI GGYRCC 1 cut(s) 328
BbvI GCAGC 2 cut(s) 208, 454
BccI CCATC 1 cut(s) 411
BceAI ACGGC 1 cut(s) 503
BcnI CCSGG 2 cut(s) 103, 408
BcoDI GTCTC 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 468
BglII AGATCT 1 cut(s) 63
BisI GCNGC 2 cut(s) 197, 468
BlsI GCNGC 2 cut(s) 198, 469
Bme1390I CCNGG 2 cut(s) 103, 408
Bme18I GGWCC 1 cut(s) 475
BmeT110I CYCGRG 1 cut(s) 214
BmgBI CACGTC 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 100, 475
BmiI GGNNCC 4 cut(s) 190, 240, 330, 476
BmrFI CCNGG 2 cut(s) 103, 408
BoxI GACNNNNGTC 1 cut(s) 480
BpuMI CCSGG 2 cut(s) 103, 408
BsaAI YACGTR 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 461
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 2 cut(s) 241, 256
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bsc4I CCNNNNNNNGG 4 cut(s) 171, 215, 248, 359
Bse118I RCCGGY 2 cut(s) 97, 256
Bse8I GATNNNNATC 1 cut(s) 461
BseAI TCCGGA 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 403
BseJI GATNNNNATC 1 cut(s) 461
BseLI CCNNNNNNNGG 4 cut(s) 171, 215, 248, 359
BseMII CTCAG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 508
BseSI GKGCMC 1 cut(s) 279
BseXI GCAGC 2 cut(s) 208, 454
BsgI GTGCAG 1 cut(s) 473
BshFI GGCC 2 cut(s) 101, 380
BshNI GGYRCC 1 cut(s) 328
BshTI ACCGGT 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 5 cut(s) 98, 103, 242, 257, 407
BslFI GGGAC 2 cut(s) 251, 488
BslI CCNNNNNNNGG 4 cut(s) 171, 215, 248, 359
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 2 cut(s) 251, 488
BsnI GGCC 2 cut(s) 101, 380
Bso31I GGTCTC 1 cut(s) 180
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 279
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 3 cut(s) 63, 414, 462
BspACI CCGC 3 cut(s) 226, 284, 353
BspANI GGCC 2 cut(s) 101, 380
BspCNI CTCAG 1 cut(s) 33
BspEI TCCGGA 1 cut(s) 241
BspLI GGNNCC 4 cut(s) 190, 240, 330, 476
BspMAI CTGCAG 1 cut(s) 472
BspPI GGATC 2 cut(s) 422, 470
BspT107I GGYRCC 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 180
BsrFI RCCGGY 2 cut(s) 97, 256
BssAI RCCGGY 2 cut(s) 97, 256
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 3 cut(s) 63, 414, 462
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 509
Bst6I CTCTTC 2 cut(s) 85, 183
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 2 cut(s) 99, 237
BstDEI CTNAG 1 cut(s) 41
BstENI CCTNNNNNAGG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 3 cut(s) 66, 417, 465
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 3 cut(s) 63, 414, 462
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 226
BstPAI GACNNNNGTC 1 cut(s) 480
BstSCI CCNGG 2 cut(s) 101, 406
BstSFI CTRYAG 1 cut(s) 468
BstSLI GKGCMC 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 208, 454
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 2 cut(s) 101, 380
BtrI CACGTC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 99, 237
Cfr10I RCCGGY 2 cut(s) 97, 256
Cfr13I GGNCC 2 cut(s) 100, 475
Csp6I GTAC 5 cut(s) 47, 106, 139, 289, 322
CspAI ACCGGT 1 cut(s) 256
CviAII CATG 2 cut(s) 223, 280
CviQI GTAC 5 cut(s) 47, 106, 139, 289, 322
DdeI CTNAG 1 cut(s) 41
DpnI GATC 3 cut(s) 65, 416, 464
DpnII GATC 3 cut(s) 63, 414, 462
Eam1104I CTCTTC 2 cut(s) 85, 183
EarI CTCTTC 2 cut(s) 85, 183
Eco130I CCWWGG 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 475
Eco88I CYCGRG 1 cut(s) 214
EcoNI CCTNNNNNAGG 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 226, 283
FaiI YATR 5 cut(s) 224, 281, 338, 340, 422
FaqI GGGAC 2 cut(s) 251, 488
FatI CATG 2 cut(s) 222, 279
FauI CCCGC 2 cut(s) 219, 360
Fnu4HI GCNGC 2 cut(s) 197, 468
FokI GGATG 1 cut(s) 390
Fsp4HI GCNGC 2 cut(s) 197, 468
GluI GCNGC 2 cut(s) 197, 468
HaeIII GGCC 2 cut(s) 101, 380
HapII CCGG 5 cut(s) 98, 103, 242, 257, 407
Hin1II CATG 2 cut(s) 226, 283
HincII GTYRAC 1 cut(s) 485
HindII GTYRAC 1 cut(s) 485
HinfI GANTC 2 cut(s) 119, 299
HpaII CCGG 5 cut(s) 98, 103, 242, 257, 407
HphI GGTGA 3 cut(s) 70, 154, 341
Hpy166II GTNNAC 4 cut(s) 49, 289, 391, 485
Hpy188I TCNGA 4 cut(s) 83, 304, 414, 439
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 4 cut(s) 49, 289, 391, 485
Hpy99I CGWCG 3 cut(s) 186, 311, 513
HpyAV CCTTC 4 cut(s) 242, 367, 379, 442
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4IV ACGT 3 cut(s) 137, 184, 291
HpyCH4V TGCA 2 cut(s) 454, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 3 cut(s) 137, 184, 291
Hsp92II CATG 2 cut(s) 226, 283
Kpn2I TCCGGA 1 cut(s) 241
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Kzo9I GATC 3 cut(s) 63, 414, 462
LmnI GCTCC 3 cut(s) 188, 244, 364
Lsp1109I GCAGC 2 cut(s) 208, 454
MaeII ACGT 3 cut(s) 137, 184, 291
MaeIII GTNAC 2 cut(s) 218, 503
MalI GATC 3 cut(s) 65, 416, 464
MboI GATC 3 cut(s) 63, 414, 462
MboII GAAGA 5 cut(s) 58, 73, 102, 151, 170
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 1 cut(s) 155
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 3 cut(s) 106, 282, 392
MnlI CCTC 8 cut(s) 23, 105, 238, 312, 370, 453, 486, 489
MroI TCCGGA 1 cut(s) 241
MroNI GCCGGC 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 2 cut(s) 199, 355
MspI CCGG 5 cut(s) 98, 103, 242, 257, 407
MspR9I CCNGG 2 cut(s) 103, 408
MwoI GCNNNNNNNGC 1 cut(s) 232
NaeI GCCGGC 1 cut(s) 99
NciI CCSGG 2 cut(s) 103, 408
NdeII GATC 3 cut(s) 63, 414, 462
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 2 cut(s) 226, 283
NlaIV GGNNCC 4 cut(s) 190, 240, 330, 476
NmeAIII GCCGAG 1 cut(s) 406
NspI RCATGY 1 cut(s) 226
PdiI GCCGGC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 119
PinAI ACCGGT 1 cut(s) 256
PkrI GCNGC 2 cut(s) 198, 469
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Ppu21I YACGTR 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 480
PspN4I GGNNCC 4 cut(s) 190, 240, 330, 476
PspPI GGNCC 2 cut(s) 100, 475
PstI CTGCAG 1 cut(s) 472
PsuI RGATCY 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 5 cut(s) 48, 107, 140, 290, 323
RsaNI GTAC 5 cut(s) 47, 106, 139, 289, 322
RseI CAYNNNNRTG 1 cut(s) 284
SatI GCNGC 2 cut(s) 197, 468
Sau3AI GATC 3 cut(s) 63, 414, 462
Sau96I GGNCC 2 cut(s) 100, 475
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 103, 408
SduI GDGCHC 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 468
SinI GGWCC 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 1 cut(s) 155
SsiI CCGC 3 cut(s) 226, 284, 353
StyD4I CCNGG 2 cut(s) 101, 406
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 509
TaiI ACGT 3 cut(s) 140, 187, 294
TaqI TCGA 1 cut(s) 181
TasI AATT 1 cut(s) 155
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 1 cut(s) 119
TseI GCWGC 2 cut(s) 196, 467
TspDTI ATGAA 2 cut(s) 17, 32
VpaK11BI GGWCC 1 cut(s) 475
XagI CCTNNNNNAGG 1 cut(s) 169
XapI RAATTY 1 cut(s) 155
XceI RCATGY 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.