AT1G09960

sucrose transport protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
3243986 .. 3247216
3231 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09960.1

Sequence Viewer

Length: 1533 bp
ATGGCTACTTCCGATCAAGATCGCCGTCACAGAGTCACTCGCAACCGTCCACCAATAGCTCGACCCTCTACTTCTTCATCTCGTCCCGTTGTATCTCCTCCTAGATCAAAAGTTTCGAAGCGTGTGCTTCTCCGTGTAGCTTCCGTCGCATGCGGGATTCAATTCGGATGGGCTCTTCAGCTTTCTCTCCTCACACCTTACGTTCAAGAGCTGGGGATCCCACACGCTTGGGCTAGTGTGATTTGGCTTTGCGGTCCTCTCTCTGGTTTGTTCGTGCAACCGCTCGTTGGGCATAGTAGCGATAGGTGTACTAGTAAGTACGGTCGTCGGAGACCGTTTATTGTCGCCGGAGCTGTGGCGATTTCTATCTCTGTTATGGTTATTGGTCATGCGGCGGATATTGGATGGGCATTTGGGGATAGAGAAGGGAAGATTAAGCCGAGGGCGATTGTTGCTTTTGTTTTAGGGTTTTGGATTCTTGATGTTGCTAATAATATGACTCAAGGTCCTTGTAGAGCTCTCCTTGCTGATCTTACTGAGAATGATAATCGCAGAACCCGAGTTGCAAATGGCTACTTCTCTCTCTTTATGGCTGTTGGCAATGTTCTTGGCTATGCTACTGGATCATACAATGGTTGGTACAAGATCTTCACTTTTACGAAGACAGTTGCATGTAATGTGGAATGTGCCAATCTCAAGTCTGCCTTCTACATAGATGTTGTCTTTATTGCAATAACTACGATCCTAAGCGTCTCAGCGGCTCATGAGGTGCCACTTGCTTCATTGGCTTCTGAAGCACATGGGCAAACCAGTGGAACAGACGAAGCTTTTCTTTCTGAGATATTTGGAACTTTCAGATATTTTCCAGGAAATGTTTGGATAATCTTGCTTGTTACAGCATTGACATGGATTGGTTGGTTTCCATTTATTCTGTTTGATACTGATTGGATGGGTCGAGAGATCTATGGCGGTGAACCGAACATAGGGACTTCATATAGTGCTGGGGTCAGTATGGGTGCACTTGGTTTGATGTTGAATTCTGTTTTTCTTGGAATCACTTCTGTGCTCATGGAGAAACTTTGCAGAAAGTGGGGGGCTGGTTTTGTTTGGGGAATATCAAATATCTTAATGGCTATTTGCTTTCTTGGAATGATAATCACCTCATTTGTTGCGTCTCACCTTGGCTACATTGGCCATGAACAACCTCCTGCCAGCATCGTGTTTGCTGCTGTGTTAATCTTTACAATTCTGGGCATTCCATTGGCGATAACTTACAGCGTCCCATATGCGTTGATTTCCATACGTATTGAATCCCTGGGCTTAGGTCAAGGCTTATCTTTGGGTGTGCTAAATTTGGCGATAGTCATCCCACAGGTAATTGTGTCTGTTGGCAGTGGCCCATGGGATCAACTGTTTGGAGGTGGGAATTCACCGGCACTTGCAGTAGGAGCAGCTACAGGCTTCATTGGCGGAATTGTAGCTATCTTGGCTCTTCCACGGACAAGGATTCAGAAGCCCATCCCTCTCCCATGA

Protein Analysis

510

Amino Acids

54.78

Weight (kDa)

9.35

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 16 - 149 1e-06 Major Facilitator Superfamily
MFS_2 PF13347 55 - 203 4.4e-14 MFS/sugar transport protein
PUCC PF03209 68 - 383 9.4e-06 PUCC protein
MFS_1 PF07690 105 - 456 2.5e-08 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 769
AccBSI CCGCTC 1 cut(s) 283
AciI CCGC 8 cut(s) 153, 252, 281, 392, 395, 758, 969, 1470
AclWI GGATC 5 cut(s) 211, 224, 631, 736, 1413
AcoI YGGCCR 1 cut(s) 1192
AcsI RAATTY 3 cut(s) 1036, 1351, 1426
AcuI CTGAAG 2 cut(s) 161, 813
AfaI GTAC 3 cut(s) 310, 320, 641
AfiI CCNNNNNNNGG 3 cut(s) 263, 287, 983
AgsI TTSAA 4 cut(s) 161, 206, 1036, 1310
AhdI GACNNNNNGTC 1 cut(s) 504
AhlI ACTAGT 1 cut(s) 311
AjnI CCWGG 2 cut(s) 865, 1314
AleI CACNNNNGTG 1 cut(s) 1061
AluBI AGCT 9 cut(s) 59, 140, 181, 211, 353, 518, 827, 1454, 1481
AluI AGCT 9 cut(s) 59, 140, 181, 211, 353, 518, 827, 1454, 1481
Alw21I GWGCWC 3 cut(s) 520, 1021, 1068
Alw26I GTCTC 3 cut(s) 325, 757, 1179
Alw44I GTGCAC 1 cut(s) 1017
AlwI GGATC 5 cut(s) 211, 224, 631, 736, 1413
Ama87I CYCGRG 1 cut(s) 558
AoxI GGCC 2 cut(s) 1192, 1396
ApaLI GTGCAC 1 cut(s) 1017
ApeKI GCWGC 2 cut(s) 1226, 1451
ApoI RAATTY 3 cut(s) 1036, 1351, 1426
Asp700I GAANNNNTTC 2 cut(s) 828, 1057
AspS9I GGNCC 3 cut(s) 254, 506, 1397
AsuHPI GGTGA 4 cut(s) 983, 1150, 1169, 1422
AsuII TTCGAA 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 558
AvaII GGWCC 2 cut(s) 254, 506
BaeGI GKGCMC 1 cut(s) 1021
BalI TGGCCA 1 cut(s) 1194
BamHI GGATCC 1 cut(s) 216
BanI GGYRCC 1 cut(s) 769
BanII GRGCYC 2 cut(s) 175, 520
BarI GAAGNNNNNNTAC 2 cut(s) 632, 664
BbsI GAAGAC 1 cut(s) 668
Bbv12I GWGCWC 3 cut(s) 520, 1021, 1068
BbvI GCAGC 2 cut(s) 1213, 1463
BccI CCATC 4 cut(s) 162, 399, 943, 1526
BceAI ACGGC 1 cut(s) 9
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 2 cut(s) 867, 1316
BcoDI GTCTC 3 cut(s) 325, 757, 1179
BcuI ACTAGT 1 cut(s) 311
BfaI CTAG 3 cut(s) 102, 234, 312
BfmI CTRYAG 1 cut(s) 1455
BglII AGATCT 2 cut(s) 645, 960
BisI GCNGC 4 cut(s) 393, 759, 1227, 1452
BlsI GCNGC 4 cut(s) 394, 760, 1228, 1453
Bme1390I CCNGG 2 cut(s) 867, 1316
Bme18I GGWCC 2 cut(s) 254, 506
BmeRI GACNNNNNGTC 1 cut(s) 504
BmeT110I CYCGRG 1 cut(s) 558
BmgT120I GGNCC 3 cut(s) 254, 506, 1397
BmiI GGNNCC 2 cut(s) 218, 771
BmrFI CCNGG 2 cut(s) 867, 1316
BmsI GCATC 1 cut(s) 1224
BpiI GAAGAC 1 cut(s) 668
Bpu10I CCTNAGC 2 cut(s) 746, 1321
Bpu14I TTCGAA 1 cut(s) 116
BpuEI CTTGAG 2 cut(s) 486, 680
BsaAI YACGTR 1 cut(s) 1304
BsaBI GATNNNNATC 3 cut(s) 18, 365, 1364
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 6 cut(s) 440, 1180, 1314, 1315, 1400, 1496
Bsc4I CCNNNNNNNGG 3 cut(s) 263, 287, 983
Bse118I RCCGGY 1 cut(s) 1432
Bse1I ACTGG 2 cut(s) 625, 810
Bse3DI GCAATG 1 cut(s) 607
Bse8I GATNNNNATC 3 cut(s) 18, 365, 1364
BseBI CCWGG 2 cut(s) 867, 1316
BseDI CCNNGG 6 cut(s) 440, 1180, 1314, 1315, 1400, 1496
BseGI GGATG 5 cut(s) 173, 410, 954, 1365, 1518
BseJI GATNNNNATC 3 cut(s) 18, 365, 1364
BseLI CCNNNNNNNGG 3 cut(s) 263, 287, 983
BseMI GCAATG 1 cut(s) 607
BseMII CTCAG 3 cut(s) 528, 768, 828
BseNI ACTGG 2 cut(s) 625, 810
BseRI GAGGAG 2 cut(s) 87, 179
BseSI GKGCMC 1 cut(s) 1021
BseXI GCAGC 2 cut(s) 1213, 1463
BseYI CCCAGC 2 cut(s) 211, 1001
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 2 cut(s) 1194, 1398
BshNI GGYRCC 1 cut(s) 769
BsiEI CGRYCG 1 cut(s) 325
BsiHKAI GWGCWC 3 cut(s) 520, 1021, 1068
BsiHKCI CYCGRG 1 cut(s) 558
BsiSI CCGG 2 cut(s) 348, 1433
BslFI GGGAC 3 cut(s) 69, 1000, 1265
BslI CCNNNNNNNGG 3 cut(s) 263, 287, 983
BsmAI GTCTC 3 cut(s) 325, 757, 1179
BsmBI CGTCTC 2 cut(s) 757, 1179
BsmFI GGGAC 3 cut(s) 69, 1000, 1265
BsmI GAATGC 1 cut(s) 1254
BsnI GGCC 2 cut(s) 1194, 1398
Bso31I GGTCTC 1 cut(s) 325
BsoBI CYCGRG 1 cut(s) 558
Bsp119I TTCGAA 1 cut(s) 116
Bsp1286I GDGCHC 4 cut(s) 175, 520, 1021, 1068
Bsp19I CCATGG 1 cut(s) 1400
BspACI CCGC 8 cut(s) 153, 252, 281, 392, 395, 758, 969, 1470
BspANI GGCC 2 cut(s) 1194, 1398
BspCNI CTCAG 3 cut(s) 529, 767, 829
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 2 cut(s) 218, 771
BspPI GGATC 5 cut(s) 211, 224, 631, 736, 1413
BspQI GCTCTTC 2 cut(s) 180, 1497
BspT104I TTCGAA 1 cut(s) 116
BspT107I GGYRCC 1 cut(s) 769
BspTNI GGTCTC 1 cut(s) 325
BsrBI CCGCTC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 607
BsrFI RCCGGY 1 cut(s) 1432
BsrI ACTGG 2 cut(s) 625, 810
BssAI RCCGGY 1 cut(s) 1432
BssECI CCNNGG 6 cut(s) 440, 1180, 1314, 1315, 1400, 1496
BssT1I CCWWGG 2 cut(s) 1180, 1400
Bst2UI CCWGG 2 cut(s) 867, 1316
Bst4CI ACNGT 5 cut(s) 47, 323, 336, 667, 1413
Bst6I CTCTTC 2 cut(s) 180, 1497
BstBAI YACGTR 1 cut(s) 1304
BstBI TTCGAA 1 cut(s) 116
BstC8I GCNNGC 2 cut(s) 151, 1213
BstDEI CTNAG 5 cut(s) 537, 746, 754, 837, 1321
BstDSI CCRYGG 2 cut(s) 1400, 1496
BstF5I GGATG 5 cut(s) 173, 410, 954, 1365, 1518
BstMAI GTCTC 3 cut(s) 325, 757, 1179
BstMCI CGRYCG 1 cut(s) 325
BstNI CCWGG 2 cut(s) 867, 1316
BstNSI RCATGY 2 cut(s) 153, 675
BstSCI CCNGG 2 cut(s) 865, 1314
BstSFI CTRYAG 1 cut(s) 1455
BstSLI GKGCMC 1 cut(s) 1021
BstSNI TACGTA 1 cut(s) 1304
BstV1I GCAGC 2 cut(s) 1213, 1463
BstV2I GAAGAC 1 cut(s) 668
BstX2I RGATCY 3 cut(s) 216, 645, 960
BstXI CCANNNNNNTGG 1 cut(s) 228
BstYI RGATCY 3 cut(s) 216, 645, 960
BsuRI GGCC 2 cut(s) 1194, 1398
BtgI CCRYGG 2 cut(s) 1400, 1496
BtsCI GGATG 5 cut(s) 173, 410, 954, 1365, 1518
BtsI GCAGTG 1 cut(s) 1399
BtsIMutI CAGTG 2 cut(s) 817, 1399
Cac8I GCNNGC 2 cut(s) 151, 1213
CciI TCATGA 1 cut(s) 763
Cfr10I RCCGGY 1 cut(s) 1432
Cfr13I GGNCC 3 cut(s) 254, 506, 1397
CseI GACGC 3 cut(s) 739, 1161, 1267
Csp6I GTAC 3 cut(s) 309, 319, 640
CviQI GTAC 3 cut(s) 309, 319, 640
DdeI CTNAG 5 cut(s) 537, 746, 754, 837, 1321
DriI GACNNNNNGTC 1 cut(s) 504
EaeI YGGCCR 1 cut(s) 1192
Eam1104I CTCTTC 2 cut(s) 180, 1497
Eam1105I GACNNNNNGTC 1 cut(s) 504
EarI CTCTTC 2 cut(s) 180, 1497
EciI GGCGGA 2 cut(s) 410, 1485
Ecl136II GAGCTC 1 cut(s) 518
Eco105I TACGTA 1 cut(s) 1304
Eco130I CCWWGG 2 cut(s) 1180, 1400
Eco24I GRGCYC 2 cut(s) 175, 520
Eco31I GGTCTC 1 cut(s) 325
Eco47I GGWCC 2 cut(s) 254, 506
Eco53kI GAGCTC 1 cut(s) 518
Eco57I CTGAAG 2 cut(s) 161, 813
Eco88I CYCGRG 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 506
EcoRI GAATTC 2 cut(s) 1036, 1426
EcoRII CCWGG 2 cut(s) 865, 1314
EcoT14I CCWWGG 2 cut(s) 1180, 1400
EcoT38I GRGCYC 2 cut(s) 175, 520
ErhI CCWWGG 2 cut(s) 1180, 1400
Esp3I CGTCTC 2 cut(s) 757, 1179
FalI AAGNNNNNCTT 4 cut(s) 689, 721, 816, 848
FaqI GGGAC 3 cut(s) 69, 1000, 1265
FauI CCCGC 1 cut(s) 146
FauNDI CATATG 1 cut(s) 1285
Fnu4HI GCNGC 4 cut(s) 393, 759, 1227, 1452
FokI GGATG 5 cut(s) 180, 417, 961, 1352, 1505
FriOI GRGCYC 2 cut(s) 175, 520
Fsp4HI GCNGC 4 cut(s) 393, 759, 1227, 1452
FspBI CTAG 3 cut(s) 102, 234, 312
GluI GCNGC 4 cut(s) 393, 759, 1227, 1452
GsaI CCCAGC 2 cut(s) 215, 1005
HaeIII GGCC 2 cut(s) 1194, 1398
HapII CCGG 2 cut(s) 348, 1433
HgaI GACGC 3 cut(s) 739, 1161, 1267
HindIII AAGCTT 1 cut(s) 825
HinfI GANTC 7 cut(s) 33, 157, 475, 499, 1053, 1310, 1507
HpaII CCGG 2 cut(s) 348, 1433
HphI GGTGA 4 cut(s) 983, 1150, 1169, 1422
Hpy166II GTNNAC 4 cut(s) 50, 309, 974, 1019
Hpy188I TCNGA 7 cut(s) 13, 167, 330, 793, 838, 857, 1512
Hpy188III TCNNGA 5 cut(s) 17, 206, 479, 764, 956
Hpy8I GTNNAC 4 cut(s) 50, 309, 974, 1019
Hpy99I CGWCG 2 cut(s) 149, 330
HpyAV CCTTC 2 cut(s) 419, 715
HpyCH4III ACNGT 5 cut(s) 47, 323, 336, 667, 1413
HpyCH4IV ACGT 2 cut(s) 201, 1303
HpyCH4V TGCA 7 cut(s) 277, 566, 671, 731, 1019, 1083, 1442
HpyF3I CTNAG 5 cut(s) 537, 746, 754, 837, 1321
HpySE526I ACGT 2 cut(s) 201, 1303
LguI GCTCTTC 2 cut(s) 180, 1497
LmnI GCTCC 2 cut(s) 350, 1448
Lsp1109I GCAGC 2 cut(s) 1213, 1463
LweI GCATC 1 cut(s) 1224
MaeI CTAG 3 cut(s) 102, 234, 312
MaeII ACGT 2 cut(s) 201, 1303
MaeIII GTNAC 3 cut(s) 26, 34, 892
MbiI CCGCTC 1 cut(s) 283
MboII GAAGA 6 cut(s) 66, 167, 442, 640, 673, 1484
MflI RGATCY 3 cut(s) 216, 645, 960
MhlI GDGCHC 4 cut(s) 175, 520, 1021, 1068
MlsI TGGCCA 1 cut(s) 1194
MluCI AATT 7 cut(s) 161, 1036, 1245, 1351, 1377, 1426, 1473
MluNI TGGCCA 1 cut(s) 1194
MlyI GAGTC 2 cut(s) 42, 493
MmeI TCCRAC 1 cut(s) 308
Mox20I TGGCCA 1 cut(s) 1194
MroXI GAANNNNTTC 2 cut(s) 828, 1057
MscI TGGCCA 1 cut(s) 1194
MseI TTAA 3 cut(s) 435, 1127, 1235
MslI CAYNNNNRTG 2 cut(s) 904, 1061
Msp20I TGGCCA 1 cut(s) 1194
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 2 cut(s) 348, 1433
MspR9I CCNGG 2 cut(s) 867, 1316
Mva1269I GAATGC 1 cut(s) 1254
MvaI CCWGG 2 cut(s) 867, 1316
NcoI CCATGG 1 cut(s) 1400
NdeI CATATG 1 cut(s) 1285
NlaIV GGNNCC 2 cut(s) 218, 771
NmeAIII GCCGAG 1 cut(s) 465
NmuCI GTSAC 2 cut(s) 26, 34
NspI RCATGY 2 cut(s) 153, 675
NspV TTCGAA 1 cut(s) 116
OliI CACNNNNGTG 1 cut(s) 1061
PaeI GCATGC 1 cut(s) 153
PagI TCATGA 1 cut(s) 763
PasI CCCWGGG 1 cut(s) 1315
PciSI GCTCTTC 2 cut(s) 180, 1497
PcsI WCGNNNNNNNCGW 1 cut(s) 556
PctI GAATGC 1 cut(s) 1254
PdmI GAANNNNTTC 2 cut(s) 828, 1057
PfeI GAWTC 5 cut(s) 157, 475, 1053, 1310, 1507
PfoI TCCNGGA 1 cut(s) 865
PkrI GCNGC 4 cut(s) 394, 760, 1228, 1453
PleI GAGTC 2 cut(s) 41, 493
PpsI GAGTC 2 cut(s) 41, 493
Ppu21I YACGTR 1 cut(s) 1304
PpuMI RGGWCCY 1 cut(s) 506
Psp124BI GAGCTC 1 cut(s) 520
Psp5II RGGWCCY 1 cut(s) 506
Psp6I CCWGG 2 cut(s) 865, 1314
PspFI CCCAGC 2 cut(s) 211, 1001
PspGI CCWGG 2 cut(s) 865, 1314
PspN4I GGNNCC 2 cut(s) 218, 771
PspPI GGNCC 3 cut(s) 254, 506, 1397
PspPPI RGGWCCY 1 cut(s) 506
PsuI RGATCY 3 cut(s) 216, 645, 960
RsaI GTAC 3 cut(s) 310, 320, 641
RsaNI GTAC 3 cut(s) 309, 319, 640
RseI CAYNNNNRTG 2 cut(s) 904, 1061
SacI GAGCTC 1 cut(s) 520
SapI GCTCTTC 2 cut(s) 180, 1497
SaqAI TTAA 3 cut(s) 435, 1127, 1235
SatI GCNGC 4 cut(s) 393, 759, 1227, 1452
Sau96I GGNCC 3 cut(s) 254, 506, 1397
SchI GAGTC 2 cut(s) 42, 493
ScrFI CCNGG 2 cut(s) 867, 1316
SduI GDGCHC 4 cut(s) 175, 520, 1021, 1068
SfaNI GCATC 1 cut(s) 1224
SfcI CTRYAG 1 cut(s) 1455
SfuI TTCGAA 1 cut(s) 116
SinI GGWCC 2 cut(s) 254, 506
SmiMI CAYNNNNRTG 2 cut(s) 904, 1061
SmlI CTYRAG 2 cut(s) 501, 695
SmoI CTYRAG 2 cut(s) 501, 695
SnaBI TACGTA 1 cut(s) 1304
SpeI ACTAGT 1 cut(s) 311
SphI GCATGC 1 cut(s) 153
Sse9I AATT 7 cut(s) 161, 1036, 1245, 1351, 1377, 1426, 1473
SsiI CCGC 8 cut(s) 153, 252, 281, 392, 395, 758, 969, 1470
SspMI CTAG 3 cut(s) 102, 234, 312
SstI GAGCTC 1 cut(s) 520
StyD4I CCNGG 2 cut(s) 865, 1314
StyI CCWWGG 2 cut(s) 1180, 1400
TaaI ACNGT 5 cut(s) 47, 323, 336, 667, 1413
TaiI ACGT 2 cut(s) 204, 1306
TaqI TCGA 3 cut(s) 61, 116, 955
TasI AATT 7 cut(s) 161, 1036, 1245, 1351, 1377, 1426, 1473
TatI WGTACW 1 cut(s) 308
TauI GCSGC 2 cut(s) 395, 761
TfiI GAWTC 5 cut(s) 157, 475, 1053, 1310, 1507
Tru1I TTAA 3 cut(s) 435, 1127, 1235
Tru9I TTAA 3 cut(s) 435, 1127, 1235
TscAI CASTG 2 cut(s) 817, 1399
TseFI GTSAC 2 cut(s) 26, 34
TseI GCWGC 2 cut(s) 1226, 1451
Tsp45I GTSAC 2 cut(s) 26, 34
TspDTI ATGAA 5 cut(s) 66, 771, 981, 1212, 1453
TspGWI ACGGA 3 cut(s) 122, 133, 1513
TspRI CASTG 2 cut(s) 817, 1399
VneI GTGCAC 1 cut(s) 1017
VpaK11BI GGWCC 2 cut(s) 254, 506
XapI RAATTY 3 cut(s) 1036, 1351, 1426
XceI RCATGY 2 cut(s) 153, 675
XcmI CCANNNNNNNNNTGG 1 cut(s) 873
XmnI GAANNNNTTC 2 cut(s) 828, 1057
XspI CTAG 3 cut(s) 102, 234, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.