Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009083

Physical Location & Seq

Genomic Coordinates Reverse (-)

26326726 .. 26327265

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0275400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAGCAGATGGGTGAGAGGAGGGATGAGGCACAACGTTGGACGACAGAACTGACTCCCAAAATGGAGGAAAGGCTGAAGATCAATTTTTTTCCTTGTCCTCACGGCCTTGCTGCAATACAAGCTGCTTCTGAAAATGTATATCATGATTATATTGATAAGTACTTTAGTGTTGATATGTTCAAGAAGAGCTACAGTTTTCCCATCCGGCCAACAACCAATGTTGATATGTCTTCTTCTGAATCTTCTACTGACTGTATATTACCTCCCCTTGCGAAGAGGCCACCTGGGAGGCCCAGGGTGAAGCGGTTCAAGTCTATTGGAGAGGTCGAAAAGAAGCTGATTCATTGCGGCCGTTGCGGAAAAATGGGCACTCATAACAAGAAGAACTGCACAGAACCTCTCGTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005801 GO:0005886 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0009705 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022857 GO:0031090 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

137

Amino Acids

15.77

Weight (kDa)

9.14

Isoelectric Point (pI)

53.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09960
fragaria_vesca	FvH4_5g33660 FvH4_5g33660 FvH4_5g33660
malus_domestica	MD08G1209900.v1.1 MD15G1394000.v1.1
prunus_persica	Prupe.1G542000_v2.0.a1 Prupe.1G542000_v2.0.a1 Prupe.1G542000_v2.0.a1
pyrus_communis	pycom08g18110
rosa_chinensis	RchiOBHm_Chr7g0232631
rosa_laevigata	RLG00000001320
rosa_roxburghii	Rroxscaffold_3G00228080
rosa_rugosa	Rorug07G0275300 Rorug07G0275400 Rorug07G0275500 Rorug07G0275600 Rorug07G0275700 Rorug07G0275800
rosa_samantha	Rh7BG403600 Rh7CG449000
rosa_wichuraiana	Rw7G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	307, 351, 360
AclI	AACGTT	1 cut(s)	37
AcoI	YGGCCR	2 cut(s)	209, 352
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	184, 313
AjnI	CCWGG	2 cut(s)	286, 296
AluBI	AGCT	3 cut(s)	125, 192, 340
AluI	AGCT	3 cut(s)	125, 192, 340
AoxI	GGCC	5 cut(s)	106, 209, 281, 293, 352
ApeKI	GCWGC	2 cut(s)	113, 125
Asp700I	GAANNNNTTC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	2 cut(s)	26, 313
BaeGI	GKGCMC	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	100, 112
BccI	CCATC	2 cut(s)	4, 212
BceAI	ACGGC	2 cut(s)	121, 339
BciT130I	CCWGG	2 cut(s)	288, 298
BfmI	CTRYAG	1 cut(s)	193
BisI	GCNGC	3 cut(s)	114, 126, 352
BlsI	GCNGC	3 cut(s)	115, 127, 353
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	2 cut(s)	288, 298
BmgT120I	GGNCC	1 cut(s)	294
BmrFI	CCNGG	2 cut(s)	288, 298
BpiI	GAAGAC	1 cut(s)	225
BsaJI	CCNNGG	3 cut(s)	287, 296, 297
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	2 cut(s)	288, 298
BseDI	CCNNGG	3 cut(s)	287, 296, 297
BseGI	GGATG	2 cut(s)	31, 204
BseMI	GCAATG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	34
BseSI	GKGCMC	1 cut(s)	374
BseX3I	CGGCCG	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	100, 112
BsgI	GTGCAG	1 cut(s)	376
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	5 cut(s)	108, 211, 283, 295, 354
BsiEI	CGRYCG	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	208
BsnI	GGCC	5 cut(s)	108, 211, 283, 295, 354
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	1 cut(s)	81
BspACI	CCGC	3 cut(s)	307, 351, 360
BspANI	GGCC	5 cut(s)	108, 211, 283, 295, 354
BspHI	TCATGA	1 cut(s)	145
BspQI	GCTCTTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	346
BssECI	CCNNGG	3 cut(s)	287, 296, 297
BssMI	GATC	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	288, 298
Bst4CI	ACNGT	2 cut(s)	197, 257
Bst6I	CTCTTC	2 cut(s)	182, 272
BstF5I	GGATG	2 cut(s)	31, 204
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 357
BstNI	CCWGG	2 cut(s)	288, 298
BstSCI	CCNGG	2 cut(s)	286, 296
BstSFI	CTRYAG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	374
BstV1I	GCAGC	2 cut(s)	100, 112
BstV2I	GAAGAC	1 cut(s)	225
BstZI	CGGCCG	1 cut(s)	352
BsuRI	GGCC	5 cut(s)	108, 211, 283, 295, 354
BtsCI	GGATG	2 cut(s)	31, 204
CciI	TCATGA	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	9 cut(s)	76, 108, 125, 192, 211, 283, 295, 340, 354
CviKI_1	RGCY	9 cut(s)	76, 108, 125, 192, 211, 283, 295, 340, 354
CviQI	GTAC	1 cut(s)	163
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
EaeI	YGGCCR	2 cut(s)	209, 352
EagI	CGGCCG	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	182, 272
EarI	CTCTTC	2 cut(s)	182, 272
EclXI	CGGCCG	1 cut(s)	352
Eco52I	CGGCCG	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	286, 296
FaeI	CATG	1 cut(s)	149
FaiI	YATR	7 cut(s)	142, 147, 153, 179, 230, 260, 378
FatI	CATG	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	114, 126, 352
FokI	GGATG	2 cut(s)	38, 191
Fsp4HI	GCNGC	3 cut(s)	114, 126, 352
GluI	GCNGC	3 cut(s)	114, 126, 352
HaeIII	GGCC	5 cut(s)	108, 211, 283, 295, 354
HapII	CCGG	1 cut(s)	208
Hin1II	CATG	1 cut(s)	149
HinfI	GANTC	3 cut(s)	55, 242, 343
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	2 cut(s)	26, 313
Hpy188I	TCNGA	2 cut(s)	133, 241
Hpy188III	TCNNGA	2 cut(s)	146, 184
HpyCH4III	ACNGT	2 cut(s)	197, 257
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	116, 393
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 357
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	81
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	221, 273, 283, 300, 310
Lsp1109I	GCAGC	2 cut(s)	100, 112
MaeII	ACGT	1 cut(s)	37
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	7 cut(s)	91, 199, 225, 228, 237, 289, 397
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	20
MroXI	GAANNNNTTC	1 cut(s)	308
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	2 cut(s)	288, 298
MvaI	CCWGG	2 cut(s)	288, 298
MwoI	GCNNNNNNNGC	2 cut(s)	122, 357
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	149
PagI	TCATGA	1 cut(s)	145
PasI	CCCWGGG	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	2 cut(s)	242, 343
PkrI	GCNGC	3 cut(s)	115, 127, 353
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp1406I	AACGTT	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	286, 296
PspGI	CCWGG	2 cut(s)	286, 296
PspPI	GGNCC	1 cut(s)	294
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SapI	GCTCTTC	1 cut(s)	182
SatI	GCNGC	3 cut(s)	114, 126, 352
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	294
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	288, 298
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	8 cut(s)	40, 127, 194, 268, 289, 330, 342, 403
SfcI	CTRYAG	1 cut(s)	193
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	3 cut(s)	307, 351, 360
StyD4I	CCNGG	2 cut(s)	286, 296
TaaI	ACNGT	2 cut(s)	197, 257
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	330
TasI	AATT	1 cut(s)	85
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	2 cut(s)	242, 343
TseI	GCWGC	2 cut(s)	113, 125
TspDTI	ATGAA	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	308
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.