Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009083

Physical Location & Seq

Genomic Coordinates Reverse (-)

26352323 .. 26352898

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0275600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTTTTGAAGTTAAATTACTGTGTTTTGGACGAAACCCTAATTCAGAAGGACACCGGATTTAATCGGCTCAAAGAGCTCACGTTGTTTGAGACTGATTTTGATGGAGTAGTCGTGGAGCTGCTTTCTAGATCCCCTAATCTTGAGATATTGATACTCAAGCCATCTCGTGGAAGTATAGATAAATATATTGAACTTTGTGATCTTCCCAAGCTCAAGAAGGTTAAATTTTGGCCTCAAGGTTATAGCTACAAGATTGAAGCAGCCAATCTTCAAACTCTTATACACAACGATTGTATGGGCTTTAGCCCGCTGCCGGACATCGGAGCACTCAACTGCGGTAACATAAAGGAGATCAAAATGTACCTTGGCCATTCTACCGTTACCAAAGAATATATTGTGAAACTTATTTCTAAGTTTCCATTTCTTGAGGAGTTGATCTTGCGCGCCTCCCTCGTATCAAAGGAGCAGAAAGGCTCTCGTCGTCTGGACGAGTTACAAGATTACTTTACTTCTAAGTTTCCAAATCTTCGAGCTTGCCGCTTAAGGGGCTGTTATGAGCATTATGGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005801 GO:0005886 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0009705 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022857 GO:0031090 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

191

Amino Acids

22.02

Weight (kDa)

8.45

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	2 - 96	2.7e-06	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09960
fragaria_vesca	FvH4_5g33660 FvH4_5g33660 FvH4_5g33660
malus_domestica	MD08G1209900.v1.1 MD15G1394000.v1.1
prunus_persica	Prupe.1G542000_v2.0.a1 Prupe.1G542000_v2.0.a1 Prupe.1G542000_v2.0.a1
pyrus_communis	pycom08g18110
rosa_chinensis	RchiOBHm_Chr7g0232631
rosa_laevigata	RLG00000001320
rosa_roxburghii	Rroxscaffold_3G00228080
rosa_rugosa	Rorug07G0275300 Rorug07G0275400 Rorug07G0275500 Rorug07G0275600 Rorug07G0275700 Rorug07G0275800
rosa_samantha	Rh7BG403600 Rh7CG449000
rosa_wichuraiana	Rw7G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	170
AccII	CGCG	1 cut(s)	447
AciI	CCGC	3 cut(s)	311, 339, 541
AclWI	GGATC	1 cut(s)	126
AcoI	YGGCCR	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	227
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	4 cut(s)	170, 316, 323, 547
AflII	CTTAAG	1 cut(s)	544
AgsI	TTSAA	4 cut(s)	10, 194, 260, 275
AluBI	AGCT	5 cut(s)	79, 121, 214, 249, 536
AluI	AGCT	5 cut(s)	79, 121, 214, 249, 536
Alw21I	GWGCWC	2 cut(s)	81, 331
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	126
AoxI	GGCC	2 cut(s)	233, 370
ApeKI	GCWGC	3 cut(s)	121, 263, 313
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	447, 449
BalI	TGGCCA	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	81
BarI	GAAGNNNNNNTAC	1 cut(s)	34
BauI	CACGAG	1 cut(s)	168
Bbv12I	GWGCWC	2 cut(s)	81, 331
BbvI	GCAGC	3 cut(s)	108, 275, 300
BccI	CCATC	2 cut(s)	98, 172
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	129
BfrI	CTTAAG	1 cut(s)	544
BisI	GCNGC	4 cut(s)	122, 264, 314, 541
BlsI	GCNGC	4 cut(s)	123, 265, 315, 542
BpuEI	CTTGAG	5 cut(s)	143, 164, 200, 222, 449
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	1 cut(s)	56
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 316, 323, 547
BseDI	CCNNGG	1 cut(s)	367
BseLI	CCNNNNNNNGG	4 cut(s)	170, 316, 323, 547
BsePI	GCGCGC	1 cut(s)	445
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	3 cut(s)	108, 275, 300
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	2 cut(s)	235, 372
BsiHKAI	GWGCWC	2 cut(s)	81, 331
BsiSI	CCGG	2 cut(s)	57, 317
BslI	CCNNNNNNNGG	4 cut(s)	170, 316, 323, 547
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	235, 372
Bsp1286I	GDGCHC	2 cut(s)	81, 331
Bsp143I	GATC	4 cut(s)	131, 202, 354, 438
BspACI	CCGC	3 cut(s)	311, 339, 541
BspANI	GGCC	2 cut(s)	235, 372
BspFNI	CGCG	1 cut(s)	447
BspPI	GGATC	1 cut(s)	126
BspTI	CTTAAG	1 cut(s)	544
BssECI	CCNNGG	1 cut(s)	367
BssHII	GCGCGC	1 cut(s)	445
BssMI	GATC	4 cut(s)	131, 202, 354, 438
BssSI	CACGAG	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	367
Bst2BI	CACGAG	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	23, 382
BstAFI	CTTAAG	1 cut(s)	544
BstC8I	GCNNGC	3 cut(s)	311, 447, 538
BstDEI	CTNAG	2 cut(s)	414, 516
BstFNI	CGCG	1 cut(s)	447
BstHHI	GCGC	2 cut(s)	447, 449
BstKTI	GATC	4 cut(s)	134, 205, 357, 441
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	4 cut(s)	131, 202, 354, 438
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 549
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	108, 275, 300
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	235, 372
Cac8I	GCNNGC	3 cut(s)	311, 447, 538
CfoI	GCGC	2 cut(s)	447, 449
Csp6I	GTAC	1 cut(s)	364
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	2 cut(s)	414, 516
DpnI	GATC	4 cut(s)	133, 204, 356, 440
DpnII	GATC	4 cut(s)	131, 202, 354, 438
EaeI	YGGCCR	1 cut(s)	370
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	367
FaiI	YATR	9 cut(s)	179, 189, 246, 284, 299, 347, 396, 558, 567
FauI	CCCGC	1 cut(s)	318
Fnu4HI	GCNGC	4 cut(s)	122, 264, 314, 541
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	122, 264, 314, 541
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	2 cut(s)	446, 448
GluI	GCNGC	4 cut(s)	122, 264, 314, 541
HaeIII	GGCC	2 cut(s)	235, 372
HapII	CCGG	2 cut(s)	57, 317
HhaI	GCGC	2 cut(s)	447, 449
Hin6I	GCGC	2 cut(s)	445, 447
HinP1I	GCGC	2 cut(s)	445, 447
HpaII	CCGG	2 cut(s)	57, 317
Hpy188I	TCNGA	2 cut(s)	48, 326
Hpy188III	TCNNGA	5 cut(s)	129, 143, 217, 428, 488
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	2 cut(s)	43, 214
HpyCH4III	ACNGT	2 cut(s)	23, 382
HpyCH4IV	ACGT	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 549
HpyF3I	CTNAG	2 cut(s)	414, 516
HpySE526I	ACGT	1 cut(s)	83
HspAI	GCGC	2 cut(s)	445, 447
Kzo9I	GATC	4 cut(s)	131, 202, 354, 438
LmnI	GCTCC	3 cut(s)	118, 326, 466
LpnPI	CCDG	3 cut(s)	70, 330, 473
Lsp1109I	GCAGC	3 cut(s)	108, 275, 300
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	3 cut(s)	341, 382, 495
MalI	GATC	4 cut(s)	133, 204, 356, 440
MboI	GATC	4 cut(s)	131, 202, 354, 438
MboII	GAAGA	3 cut(s)	197, 263, 521
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	2 cut(s)	81, 331
MlsI	TGGCCA	1 cut(s)	372
MluCI	AATT	4 cut(s)	16, 42, 227, 571
MluNI	TGGCCA	1 cut(s)	372
MnlI	CCTC	4 cut(s)	246, 424, 460, 464
Mox20I	TGGCCA	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	372
MseI	TTAA	4 cut(s)	14, 63, 225, 545
Msp20I	TGGCCA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	313
MspCI	CTTAAG	1 cut(s)	544
MspI	CCGG	2 cut(s)	57, 317
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	76, 549
NdeII	GATC	4 cut(s)	131, 202, 354, 438
PauI	GCGCGC	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	123, 265, 315, 542
Psp124BI	GAGCTC	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	131
PteI	GCGCGC	1 cut(s)	445
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	4 cut(s)	14, 63, 225, 545
SatI	GCNGC	4 cut(s)	122, 264, 314, 541
Sau3AI	GATC	4 cut(s)	131, 202, 354, 438
SduI	GDGCHC	2 cut(s)	81, 331
SetI	ASST	9 cut(s)	81, 86, 123, 216, 225, 244, 251, 369, 538
SmlI	CTYRAG	6 cut(s)	143, 158, 215, 237, 428, 544
SmoI	CTYRAG	6 cut(s)	143, 158, 215, 237, 428, 544
Sse9I	AATT	4 cut(s)	16, 42, 227, 571
SsiI	CCGC	3 cut(s)	311, 339, 541
SspMI	CTAG	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	2 cut(s)	23, 382
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	532
TasI	AATT	4 cut(s)	16, 42, 227, 571
TauI	GCSGC	1 cut(s)	543
Tru1I	TTAA	4 cut(s)	14, 63, 225, 545
Tru9I	TTAA	4 cut(s)	14, 63, 225, 545
TseI	GCWGC	3 cut(s)	121, 263, 313
Van91I	CCANNNNNTGG	1 cut(s)	170
Vha464I	CTTAAG	1 cut(s)	544
XapI	RAATTY	1 cut(s)	227
XbaI	TCTAGA	1 cut(s)	128
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.