Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009083

Physical Location & Seq

Genomic Coordinates Reverse (-)

26367961 .. 26369114

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0275800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGATTTGAGAAAAGAGAGTTTTTCTTATTAGTAGTACTAGTGTTGCTCAACAGTTCGGCAACATCAACAGCCACCCGTCCACTTTCAGCCAATTATGATGATCTCATCAAAGTGTTTGAGGATTGGGCCCTCGAACACAAACTCGTCTATCCTACTGAAGAAGAGAAACAAAGGCGATTTGAAAACTTCAGAGCAACGTATGAGTTCGTGGACAAATTCTATAAGGAAATAAGTGTGCTAGTCCCTTGGAGACTGCGGGTAGCTTGGAATAATTGTCTGTTTTTTGTTCGCACGATTCAGTTCAAAGTTAGTCATATCTACTGGGAGGGGAATACAGTAGCAGACGCTCTAGCAGATTATGGTGCTACTCATATGGGTTCCAGCTGGTGGGATGAGCTTCCTGCTTTCATTGTCGGCCAGTATGGGCGGGACCTGACTTCAGCAAATGTTTATAGGCCTTGTCCCCCATTTCTTTGTATTTCTTTTAATAACATTTCGAATAAGGGCGAGGAGTTAGCCCTTATGTCGCTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005801 GO:0005886 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0009705 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022857 GO:0031090 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

179

Amino Acids

20.84

Weight (kDa)

5.42

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	40 - 74	3e-06	Cathepsin propeptide inhibitor domain (I29)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09960
fragaria_vesca	FvH4_5g33660 FvH4_5g33660 FvH4_5g33660
malus_domestica	MD08G1209900.v1.1 MD15G1394000.v1.1
prunus_persica	Prupe.1G542000_v2.0.a1 Prupe.1G542000_v2.0.a1 Prupe.1G542000_v2.0.a1
pyrus_communis	pycom08g18110
rosa_chinensis	RchiOBHm_Chr7g0232631
rosa_laevigata	RLG00000001320
rosa_roxburghii	Rroxscaffold_3G00228080
rosa_rugosa	Rorug07G0275300 Rorug07G0275400 Rorug07G0275500 Rorug07G0275600 Rorug07G0275700 Rorug07G0275800
rosa_samantha	Rh7BG403600 Rh7CG449000
rosa_wichuraiana	Rw7G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	390
AciI	CCGC	2 cut(s)	259, 430
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	3 cut(s)	175, 180, 426
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	390
AgsI	TTSAA	2 cut(s)	185, 307
AhlI	ACTAGT	1 cut(s)	40
AluBI	AGCT	3 cut(s)	266, 387, 400
AluI	AGCT	3 cut(s)	266, 387, 400
Alw26I	GTCTC	1 cut(s)	247
AoxI	GGCC	3 cut(s)	129, 418, 458
ApaI	GGGCCC	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	218
AspS9I	GGNCC	3 cut(s)	129, 130, 433
AsuII	TTCGAA	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	247
BcuI	ACTAGT	1 cut(s)	40
BfaI	CTAG	3 cut(s)	41, 242, 353
BmcAI	AGTACT	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	3 cut(s)	129, 130, 433
BmiI	GGNNCC	3 cut(s)	131, 382, 434
BmrI	ACTGGG	1 cut(s)	334
BmuI	ACTGGG	1 cut(s)	334
Bpu14I	TTCGAA	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse1I	ACTGG	2 cut(s)	329, 421
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	329, 421
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	133
BshFI	GGCC	3 cut(s)	131, 420, 460
BslFI	GGGAC	3 cut(s)	230, 446, 450
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	1 cut(s)	247
BsmFI	GGGAC	3 cut(s)	230, 446, 450
BsnI	GGCC	3 cut(s)	131, 420, 460
Bsp119I	TTCGAA	1 cut(s)	500
Bsp120I	GGGCCC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	2 cut(s)	259, 430
BspANI	GGCC	3 cut(s)	131, 420, 460
BspLI	GGNNCC	3 cut(s)	131, 382, 434
BspT104I	TTCGAA	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	329, 421
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	56, 340
Bst6I	CTCTTC	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	500
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	103
BstSLI	GKGCMC	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	131, 420, 460
BtsCI	GGATG	1 cut(s)	400
Cfr13I	GGNCC	3 cut(s)	129, 130, 433
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	38
CviJI	RGCY	9 cut(s)	74, 92, 131, 266, 387, 400, 420, 460, 521
CviKI_1	RGCY	9 cut(s)	74, 92, 131, 266, 387, 400, 420, 460, 521
CviQI	GTAC	1 cut(s)	38
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	248
Eco147I	AGGCCT	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	3 cut(s)	175, 180, 426
EcoO109I	RGGNCCY	2 cut(s)	130, 433
EcoT14I	CCWWGG	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	248
FaqI	GGGAC	3 cut(s)	230, 446, 450
FauI	CCCGC	2 cut(s)	252, 423
FauNDI	CATATG	1 cut(s)	375
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	133
FspBI	CTAG	3 cut(s)	41, 242, 353
HaeIII	GGCC	3 cut(s)	131, 420, 460
HgaI	GACGC	1 cut(s)	356
HinfI	GANTC	1 cut(s)	298
Hpy166II	GTNNAC	2 cut(s)	83, 214
Hpy188I	TCNGA	1 cut(s)	194
Hpy8I	GTNNAC	2 cut(s)	83, 214
HpyCH4III	ACNGT	2 cut(s)	56, 340
HpyCH4IV	ACGT	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	200
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	6 cut(s)	310, 373, 397, 417, 434, 449
MaeI	CTAG	3 cut(s)	41, 242, 353
MaeII	ACGT	1 cut(s)	200
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	173, 176
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	3 cut(s)	94, 218, 274
MnlI	CCTC	4 cut(s)	115, 143, 322, 505
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	387
NdeI	CATATG	1 cut(s)	375
NdeII	GATC	1 cut(s)	103
NlaIV	GGNNCC	3 cut(s)	131, 382, 434
NspV	TTCGAA	1 cut(s)	500
PceI	AGGCCT	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	298
PflMI	CCANNNNNTGG	1 cut(s)	390
PpuMI	RGGWCCY	1 cut(s)	433
Psp5II	RGGWCCY	1 cut(s)	433
PspN4I	GGNNCC	3 cut(s)	131, 382, 434
PspOMI	GGGCCC	1 cut(s)	129
PspPI	GGNCC	3 cut(s)	129, 130, 433
PspPPI	RGGWCCY	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	387
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	489
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	3 cut(s)	129, 130, 433
ScaI	AGTACT	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	5 cut(s)	203, 268, 389, 402, 438
SfuI	TTCGAA	1 cut(s)	500
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	113
SpeI	ACTAGT	1 cut(s)	40
Sse9I	AATT	3 cut(s)	94, 218, 274
SseBI	AGGCCT	1 cut(s)	460
SsiI	CCGC	2 cut(s)	259, 430
SspMI	CTAG	3 cut(s)	41, 242, 353
StuI	AGGCCT	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	2 cut(s)	56, 340
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	2 cut(s)	135, 500
TasI	AATT	3 cut(s)	94, 218, 274
TatI	WGTACW	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TspDTI	ATGAA	1 cut(s)	400
Van91I	CCANNNNNTGG	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	1 cut(s)	218
XspI	CTAG	3 cut(s)	41, 242, 353
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.