AT1G10865

Cytochrome C oxidase assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018333
Physical Location & Seq
Reverse (-)
3614513 .. 3616308
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10865.1

Sequence Viewer

Length: 216 bp
ATGGCGAAGTCTTGTAAGGGCCTTGCTGAAGAGCTTGTCAAATGTCTCAGTGAATCGATTTGTGTCAAGGGCGAGAAACGATCAATTAGGGACTGCACTGGTGAAAAAAGCCCATGTATACCGAGTGAGTGTGTTGGCCTAAGAGAAACCTACTTCAACTGTAAAAGAGGACAGGTAGACATGAGAGCCAGGATTCGAGGAAACAAAGGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Pet191_N

Protein Analysis

71

Amino Acids

7.92

Weight (kDa)

9.1

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pet191_N PF10203 3 - 68 1.1e-23 Cytochrome c oxidase assembly protein PET191
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10865 AT1G10865
fragaria_vesca FvH4_2g40490
malus_domestica MD00G1038600.v1.1 MD08G1038400.v1.1
prunus_persica Prupe.1G386000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0300241
rosa_roxburghii Rroxscaffold_7G00167980
rosa_samantha Rh6AG406600
rosa_wichuraiana Rw6G035580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 118, 177
AcuI CTGAAG 1 cut(s) 48
AgsI TTSAA 1 cut(s) 157
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 50
AoxI GGCC 2 cut(s) 19, 136
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 190
Bsa29I ATCGAT 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 190
BseCI ATCGAT 1 cut(s) 56
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 79
BshFI GGCC 2 cut(s) 21, 138
BshVI ATCGAT 1 cut(s) 56
BslFI GGGAC 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 2 cut(s) 21, 138
Bsp143I GATC 1 cut(s) 80
BspANI GGCC 2 cut(s) 21, 138
BspCNI CTCAG 1 cut(s) 60
BspDI ATCGAT 1 cut(s) 56
BspQI GCTCTTC 1 cut(s) 24
BsrI ACTGG 1 cut(s) 103
BssMI GATC 1 cut(s) 80
BssNAI GTATAC 1 cut(s) 119
Bst1107I GTATAC 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 47, 140
BstKTI GATC 1 cut(s) 83
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BstZ17I GTATAC 1 cut(s) 119
Bsu15I ATCGAT 1 cut(s) 56
BsuRI GGCC 2 cut(s) 21, 138
BsuTUI ATCGAT 1 cut(s) 56
BtsIMutI CAGTG 2 cut(s) 55, 96
Cfr13I GGNCC 1 cut(s) 19
ClaI ATCGAT 1 cut(s) 56
CviAII CATG 2 cut(s) 114, 181
CviJI RGCY 6 cut(s) 21, 34, 111, 138, 188, 210
CviKI_1 RGCY 6 cut(s) 21, 34, 111, 138, 188, 210
DdeI CTNAG 2 cut(s) 47, 140
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 188
FaeI CATG 2 cut(s) 117, 184
FaiI YATR 3 cut(s) 115, 119, 182
FaqI GGGAC 1 cut(s) 104
FatI CATG 2 cut(s) 113, 180
FblI GTMKAC 2 cut(s) 118, 177
HaeIII GGCC 2 cut(s) 21, 138
Hin1II CATG 2 cut(s) 117, 184
HinfI GANTC 2 cut(s) 53, 193
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 2 cut(s) 119, 178
Hpy8I GTNNAC 2 cut(s) 119, 178
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 96
HpyF3I CTNAG 2 cut(s) 47, 140
Hsp92II CATG 2 cut(s) 117, 184
Kzo9I GATC 1 cut(s) 80
LguI GCTCTTC 1 cut(s) 24
LpnPI CCDG 4 cut(s) 84, 158, 175, 202
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MboII GAAGA 1 cut(s) 41
MluCI AATT 1 cut(s) 84
MnlI CCTC 2 cut(s) 161, 191
MspR9I CCNGG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 190
NdeII GATC 1 cut(s) 80
NlaIII CATG 2 cut(s) 117, 184
PciSI GCTCTTC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 53, 193
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspPI GGNCC 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 190
SetI ASST 3 cut(s) 36, 152, 177
Sse9I AATT 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 2 cut(s) 56, 196
TasI AATT 1 cut(s) 84
TfiI GAWTC 2 cut(s) 53, 193
TscAI CASTG 2 cut(s) 55, 103
TspRI CASTG 2 cut(s) 55, 103
XmiI GTMKAC 2 cut(s) 118, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.