MD00G1038600.v1.1

Cytochrome c oxidase assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0018333
Physical Location & Seq
Forward (+)
6724049 .. 6724273
225 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1038600.v1.1.491

Sequence Viewer

Length: 225 bp
ATGAGGTTCAATCTAAGTCGATTGCAGGTTCAAGCAACGGAATTGGTCAAGTGTCTAAGTGAGTGTGACTGCATTAAGGTTGAGAAGCGGTCTTATAGGGAGTGCGCTGGGGAAAAGAGTCCATTAATATCAAGCGAATGTATTGGTCTGATGGAAAAGTATTTCAATTGCAAAAGAGGGCGGGTTGACATGAGGGCTAGGATTCGGGGGAATAAAGGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Pet191_N

Protein Analysis

75

Amino Acids

8.6

Weight (kDa)

9.35

Isoelectric Point (pI)

56.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pet191_N PF10203 12 - 71 1.5e-18 Cytochrome c oxidase assembly protein PET191
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10865 AT1G10865
fragaria_vesca FvH4_2g40490
malus_domestica MD00G1038600.v1.1 MD08G1038400.v1.1
prunus_persica Prupe.1G386000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0300241
rosa_roxburghii Rroxscaffold_7G00167980
rosa_samantha Rh6AG406600
rosa_wichuraiana Rw6G035580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 16
AciI CCGC 2 cut(s) 88, 181
AgsI TTSAA 3 cut(s) 10, 32, 166
AseI ATTAAT 1 cut(s) 125
AspLEI GCGC 1 cut(s) 107
BccI CCATC 1 cut(s) 145
BfaI CTAG 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 107
BspACI CCGC 2 cut(s) 88, 181
BspMI ACCTGC 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 14, 56
BstHHI GCGC 1 cut(s) 107
BveI ACCTGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 107
CviAII CATG 1 cut(s) 190
CviJI RGCY 2 cut(s) 197, 219
CviKI_1 RGCY 2 cut(s) 197, 219
DdeI CTNAG 2 cut(s) 14, 56
FaeI CATG 1 cut(s) 193
FaiI YATR 2 cut(s) 96, 191
FatI CATG 1 cut(s) 189
FauI CCCGC 1 cut(s) 174
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 106
GsaI CCCAGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 107
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 2 cut(s) 118, 202
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 150
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4V TGCA 3 cut(s) 25, 72, 171
HpyF3I CTNAG 2 cut(s) 14, 56
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 1 cut(s) 105
LpnPI CCDG 2 cut(s) 11, 93
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 65
MfeI CAATTG 1 cut(s) 166
MluCI AATT 2 cut(s) 41, 166
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 2 cut(s) 170, 186
MseI TTAA 2 cut(s) 75, 125
MunI CAATTG 1 cut(s) 166
NlaIII CATG 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 202
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PshBI ATTAAT 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 75, 125
SchI GAGTC 1 cut(s) 127
SetI ASST 3 cut(s) 8, 30, 81
SgeI CNNG 9 cut(s) 38, 44, 61, 120, 144, 194, 202, 210, 218
Sse9I AATT 2 cut(s) 41, 166
SsiI CCGC 2 cut(s) 88, 181
SspMI CTAG 1 cut(s) 198
TaqI TCGA 1 cut(s) 19
TasI AATT 2 cut(s) 41, 166
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 2 cut(s) 75, 125
Tru9I TTAA 2 cut(s) 75, 125
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspGWI ACGGA 1 cut(s) 53
VspI ATTAAT 1 cut(s) 125
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.