Rh6AG406600

Cytochrome c oxidase assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018333
Physical Location & Seq
Forward (+)
60418433 .. 60421693
3261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG406600.1

Sequence Viewer

Length: 480 bp
ATGGCAAAGTCTTGCAGTGGCCTAGCAGATGAGCTAGTCAAGTGTCTTAGTGAGTGTGATTGCATTAAGGTTGAGAAGCGGTCGATCCGGGAATGTGCCGGAGAGAAGAGCCCATCGATATCTAGCGAATGTATCGGTCTCAGGGAAACATATTTCAATTGCAAGAGAGGCCAGGCTGCAAAAGGTGGCTTGCGAACTGGGATCAAATATGGTAACAGTAGAATTGGGATTCATGTGGTGCCGAACTTGCAACGTAACCCATGTATTGGTAGTTGGAGCATGCCGGTGCTGTTTACCGTTGGTTTGTGTTTCACAGTACAAATGGGGGAGTTACGCAGAGCCCTCGAAGGCTATAGTCCAGACAACAGCTATGTCATATGCGACCGTGTCTACGTTTTGCATCCAATTCAAAGCCTTACTCCACGCAACAGAACAACACAGACTACAAGCTCACATAAGCCAAAGCCCAATATTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Pet191_N

Protein Analysis

159

Amino Acids

17.57

Weight (kDa)

9.07

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pet191_N PF10203 3 - 58 1.3e-14 Cytochrome c oxidase assembly protein PET191
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10865 AT1G10865
fragaria_vesca FvH4_2g40490
malus_domestica MD00G1038600.v1.1 MD08G1038400.v1.1
prunus_persica Prupe.1G386000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0300241
rosa_roxburghii Rroxscaffold_7G00167980
rosa_samantha Rh6AG406600
rosa_wichuraiana Rw6G035580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 238
AccB7I CCANNNNNTGG 1 cut(s) 266
AccI GTMKAC 1 cut(s) 390
AciI CCGC 1 cut(s) 79
AclWI GGATC 2 cut(s) 79, 209
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 2 cut(s) 157, 410
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 3 cut(s) 34, 369, 450
AluI AGCT 3 cut(s) 34, 369, 450
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 2 cut(s) 79, 209
AoxI GGCC 2 cut(s) 19, 169
ApeKI GCWGC 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 89
BanI GGYRCC 1 cut(s) 238
BanII GRGCYC 2 cut(s) 113, 343
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 1 cut(s) 173
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 4 cut(s) 23, 35, 123, 478
BfmI CTRYAG 1 cut(s) 352
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 2 cut(s) 89, 173
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 2 cut(s) 89, 173
BmrI ACTGGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 409
BmuI ACTGGG 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 173
BseCI ATCGAT 1 cut(s) 116
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 163
Bsh1285I CGRYCG 2 cut(s) 83, 385
BshFI GGCC 2 cut(s) 21, 171
BshNI GGYRCC 1 cut(s) 238
BshVI ATCGAT 1 cut(s) 116
BsiEI CGRYCG 2 cut(s) 83, 385
BsiSI CCGG 3 cut(s) 88, 99, 284
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 143
BsnI GGCC 2 cut(s) 21, 171
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 113, 343
Bsp143I GATC 2 cut(s) 84, 201
BspACI CCGC 1 cut(s) 79
BspANI GGCC 2 cut(s) 21, 171
BspCNI CTCAG 1 cut(s) 153
BspDI ATCGAT 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 2 cut(s) 79, 209
BspQI GCTCTTC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 283
BsrI ACTGG 1 cut(s) 202
BssAI RCCGGY 1 cut(s) 283
BssMI GATC 2 cut(s) 84, 201
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 4 cut(s) 218, 298, 316, 386
Bst6I CTCTTC 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 191, 281
BstDEI CTNAG 2 cut(s) 47, 140
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 2 cut(s) 87, 204
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 2 cut(s) 84, 201
BstMCI CGRYCG 2 cut(s) 83, 385
BstMWI GCNNNNNNNGC 2 cut(s) 168, 247
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 283
BstSCI CCNGG 2 cut(s) 87, 171
BstSFI CTRYAG 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 163
Bsu15I ATCGAT 1 cut(s) 116
BsuRI GGCC 2 cut(s) 21, 171
BsuTUI ATCGAT 1 cut(s) 116
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 191, 281
Cfr10I RCCGGY 1 cut(s) 283
ClaI ATCGAT 1 cut(s) 116
Csp6I GTAC 1 cut(s) 317
CviAII CATG 3 cut(s) 233, 261, 280
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 2 cut(s) 47, 140
DpnI GATC 2 cut(s) 86, 203
DpnII GATC 2 cut(s) 84, 201
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco24I GRGCYC 2 cut(s) 113, 343
Eco31I GGTCTC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 120
EcoRII CCWGG 1 cut(s) 171
EcoRV GATATC 1 cut(s) 120
EcoT38I GRGCYC 2 cut(s) 113, 343
FaeI CATG 3 cut(s) 236, 264, 283
FatI CATG 3 cut(s) 232, 260, 279
FauNDI CATATG 1 cut(s) 377
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 387
FriOI GRGCYC 2 cut(s) 113, 343
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 4 cut(s) 23, 35, 123, 478
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 2 cut(s) 21, 171
HapII CCGG 3 cut(s) 88, 99, 284
Hin1II CATG 3 cut(s) 236, 264, 283
HinfI GANTC 1 cut(s) 229
HpaII CCGG 3 cut(s) 88, 99, 284
Hpy166II GTNNAC 2 cut(s) 294, 391
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 2 cut(s) 294, 391
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 4 cut(s) 218, 298, 316, 386
HpyCH4IV ACGT 2 cut(s) 253, 393
HpyCH4V TGCA 6 cut(s) 15, 63, 162, 179, 250, 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 247
HpyF3I CTNAG 2 cut(s) 47, 140
HpySE526I ACGT 2 cut(s) 253, 393
Hsp92II CATG 3 cut(s) 236, 264, 283
Kzo9I GATC 2 cut(s) 84, 201
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 8 cut(s) 101, 112, 127, 158, 183, 185, 297, 372
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 409
MaeI CTAG 4 cut(s) 23, 35, 123, 478
MaeII ACGT 2 cut(s) 253, 393
MaeIII GTNAC 3 cut(s) 212, 254, 330
MalI GATC 2 cut(s) 86, 203
MboI GATC 2 cut(s) 84, 201
MboII GAAGA 1 cut(s) 118
MfeI CAATTG 1 cut(s) 157
MhlI GDGCHC 2 cut(s) 113, 343
MluCI AATT 3 cut(s) 157, 222, 405
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 2 cut(s) 161, 353
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 3 cut(s) 88, 99, 284
MspR9I CCNGG 2 cut(s) 89, 173
MunI CAATTG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 168, 247
NciI CCSGG 1 cut(s) 89
NdeI CATATG 1 cut(s) 377
NdeII GATC 2 cut(s) 84, 201
NlaIII CATG 3 cut(s) 236, 264, 283
NlaIV GGNNCC 1 cut(s) 240
NspI RCATGY 1 cut(s) 283
PaeI GCATGC 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 229
PflFI GACNNNGTC 1 cut(s) 386
PflMI CCANNNNNTGG 1 cut(s) 266
PfoI TCCNGGA 1 cut(s) 87
PkrI GCNGC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 240
PsyI GACNNNGTC 1 cut(s) 386
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 284
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 84, 201
ScrFI CCNGG 2 cut(s) 89, 173
SduI GDGCHC 2 cut(s) 113, 343
SetI ASST 7 cut(s) 36, 72, 187, 256, 371, 396, 452
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 284
SphI GCATGC 1 cut(s) 283
Sse9I AATT 3 cut(s) 157, 222, 405
SsiI CCGC 1 cut(s) 79
SspI AATATT 1 cut(s) 472
SspMI CTAG 4 cut(s) 23, 35, 123, 478
StyD4I CCNGG 2 cut(s) 87, 171
TaaI ACNGT 4 cut(s) 218, 298, 316, 386
TaiI ACGT 2 cut(s) 256, 396
TaqI TCGA 3 cut(s) 83, 116, 345
TaqII GACCGA 1 cut(s) 125
TasI AATT 3 cut(s) 157, 222, 405
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 22
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 221
TspRI CASTG 1 cut(s) 22
Tth111I GACNNNGTC 1 cut(s) 386
Van91I CCANNNNNTGG 1 cut(s) 266
XceI RCATGY 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 4 cut(s) 23, 35, 123, 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.