Rroxscaffold_7G00167980

Cytochrome c oxidase assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018333
Physical Location & Seq
Reverse (-)
8938174 .. 8939165
992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00167980.1

Sequence Viewer

Length: 216 bp
ATGGCAAAGTCTTGCAGTGGCCTAGCAGATGAGCTAGTCAAGTGTCTAAGTGAGTGTGATTGCATTAAGGTTGAGAAGCGGTCGATCCGGGAATGTGCCGGAGAGAAGAGCCCATCCATATCAAGCGAATGTATCGGTCTGAGGGAAACATATTTCAATTGCAAGAGAGGCCAGGTCGACATGAGAAATAGGATTCGCGGGAACAAAGGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Pet191_N

Protein Analysis

71

Amino Acids

7.95

Weight (kDa)

8.75

Isoelectric Point (pI)

64.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pet191_N PF10203 3 - 68 8.1e-23 Cytochrome c oxidase assembly protein PET191
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10865 AT1G10865
fragaria_vesca FvH4_2g40490
malus_domestica MD00G1038600.v1.1 MD08G1038400.v1.1
prunus_persica Prupe.1G386000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0300241
rosa_roxburghii Rroxscaffold_7G00167980
rosa_samantha Rh6AG406600
rosa_wichuraiana Rw6G035580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 198
AciI CCGC 2 cut(s) 79, 198
AclWI GGATC 1 cut(s) 79
AgsI TTSAA 1 cut(s) 157
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
AlwI GGATC 1 cut(s) 79
AoxI GGCC 2 cut(s) 19, 169
AsuC2I CCSGG 1 cut(s) 89
BanII GRGCYC 1 cut(s) 113
BccI CCATC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 173
BcnI CCSGG 1 cut(s) 89
BfaI CTAG 2 cut(s) 23, 35
Bme1390I CCNGG 2 cut(s) 89, 173
BmrFI CCNGG 2 cut(s) 89, 173
BpuMI CCSGG 1 cut(s) 89
BseBI CCWGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 21, 171
BsiEI CGRYCG 1 cut(s) 83
BsiSI CCGG 2 cut(s) 88, 99
BsnI GGCC 2 cut(s) 21, 171
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 2 cut(s) 79, 198
BspANI GGCC 2 cut(s) 21, 171
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 1 cut(s) 198
BspPI GGATC 1 cut(s) 79
BspQI GCTCTTC 1 cut(s) 101
BssMI GATC 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 47, 140
BstF5I GGATG 1 cut(s) 113
BstFNI CGCG 1 cut(s) 198
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 87, 171
BstUI CGCG 1 cut(s) 198
BsuRI GGCC 2 cut(s) 21, 171
BtsCI GGATG 1 cut(s) 113
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 22
CviAII CATG 1 cut(s) 181
CviJI RGCY 5 cut(s) 21, 34, 111, 171, 210
CviKI_1 RGCY 5 cut(s) 21, 34, 111, 171, 210
DdeI CTNAG 2 cut(s) 47, 140
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 113
FaeI CATG 1 cut(s) 184
FaiI YATR 3 cut(s) 119, 151, 182
FatI CATG 1 cut(s) 180
FauI CCCGC 1 cut(s) 191
FblI GTMKAC 1 cut(s) 177
FokI GGATG 1 cut(s) 100
FriOI GRGCYC 1 cut(s) 113
FspBI CTAG 2 cut(s) 23, 35
HaeIII GGCC 2 cut(s) 21, 171
HapII CCGG 2 cut(s) 88, 99
Hin1II CATG 1 cut(s) 184
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 1 cut(s) 193
HpaII CCGG 2 cut(s) 88, 99
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 141
Hpy8I GTNNAC 1 cut(s) 178
HpyCH4V TGCA 3 cut(s) 15, 63, 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 2 cut(s) 47, 140
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 1 cut(s) 84
LguI GCTCTTC 1 cut(s) 101
LpnPI CCDG 4 cut(s) 101, 112, 158, 185
MaeI CTAG 2 cut(s) 23, 35
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 1 cut(s) 118
MfeI CAATTG 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 1 cut(s) 157
MnlI CCTC 2 cut(s) 135, 161
MseI TTAA 1 cut(s) 66
MspI CCGG 2 cut(s) 88, 99
MspR9I CCNGG 2 cut(s) 89, 173
MunI CAATTG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 168
NciI CCSGG 1 cut(s) 89
NdeII GATC 1 cut(s) 84
NlaIII CATG 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 193
PfoI TCCNGGA 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
SalI GTCGAC 1 cut(s) 176
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 1 cut(s) 84
ScrFI CCNGG 2 cut(s) 89, 173
SduI GDGCHC 1 cut(s) 113
SetI ASST 3 cut(s) 36, 72, 177
Sse9I AATT 1 cut(s) 157
SsiI CCGC 2 cut(s) 79, 198
SspMI CTAG 2 cut(s) 23, 35
StyD4I CCNGG 2 cut(s) 87, 171
TaqI TCGA 2 cut(s) 83, 177
TaqII GACCGA 1 cut(s) 125
TasI AATT 1 cut(s) 157
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 22
TspRI CASTG 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 2 cut(s) 23, 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.