FvH4_2g40490

Cytochrome c oxidase assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0018333
Physical Location & Seq
Reverse (-)
28817190 .. 28817842
653 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40490.t1

Sequence Viewer

Length: 309 bp
ATGGCGAAGTCTTGCAGCGGGCTGGCAGATGAGTTAGTCAAGTGTCTAAGTGAGTGTGATTGCGTCAAGGTTGAGAAGCGTTCGTTCAGGGAATGTGCTGGAGAGAAGAGCCCTTCTATATCAAGCGAATGTATTGGTCTCAGGGAAACATATTTCAATTGCAAGAGAGGCCAGTTCAAAAAGGATGTGGATGGTCCCTGTCTCATTCATGTCGTGAATTATGAAATAGAATGTGGCAATGATGATGAATCAAGACTCTTTTATGTACAGAGGGGGATTCTCTACGAAGAGCTTCCAAGCACTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Pet191_N

Protein Analysis

103

Amino Acids

11.55

Weight (kDa)

5.03

Isoelectric Point (pI)

72.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pet191_N PF10203 3 - 59 2.8e-16 Cytochrome c oxidase assembly protein PET191
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10865 AT1G10865
fragaria_vesca FvH4_2g40490
malus_domestica MD00G1038600.v1.1 MD08G1038400.v1.1
prunus_persica Prupe.1G386000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0300241
rosa_roxburghii Rroxscaffold_7G00167980
rosa_samantha Rh6AG406600
rosa_wichuraiana Rw6G035580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 18
AfaI GTAC 1 cut(s) 267
AgsI TTSAA 2 cut(s) 157, 178
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw26I GTCTC 2 cut(s) 143, 206
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 194
AvaII GGWCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 185
BcoDI GTCTC 2 cut(s) 143, 206
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 244
BseGI GGATG 2 cut(s) 190, 196
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 171
BslFI GGGAC 1 cut(s) 180
BsmAI GTCTC 2 cut(s) 143, 206
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 1 cut(s) 171
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 113
Bsp1407I TGTACA 1 cut(s) 265
BspACI CCGC 1 cut(s) 18
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 196
BspQI GCTCTTC 2 cut(s) 101, 282
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 244
BsrGI TGTACA 1 cut(s) 265
BsrI ACTGG 1 cut(s) 172
Bst6I CTCTTC 2 cut(s) 101, 282
BstAUI TGTACA 1 cut(s) 265
BstC8I GCNNGC 2 cut(s) 20, 24
BstDEI CTNAG 2 cut(s) 47, 140
BstF5I GGATG 2 cut(s) 190, 196
BstMAI GTCTC 2 cut(s) 143, 206
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 190, 196
Cac8I GCNNGC 2 cut(s) 20, 24
Cfr13I GGNCC 1 cut(s) 194
CseI GACGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 266
CviAII CATG 1 cut(s) 209
CviJI RGCY 4 cut(s) 22, 111, 171, 292
CviKI_1 RGCY 4 cut(s) 22, 111, 171, 292
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 2 cut(s) 47, 140
Eam1104I CTCTTC 2 cut(s) 101, 282
EarI CTCTTC 2 cut(s) 101, 282
Eco24I GRGCYC 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 113
FaeI CATG 1 cut(s) 212
FaiI YATR 5 cut(s) 119, 151, 210, 222, 264
FaqI GGGAC 1 cut(s) 180
FatI CATG 1 cut(s) 208
FauI CCCGC 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 2 cut(s) 197, 203
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 16
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 171
HgaI GACGC 1 cut(s) 52
Hin1II CATG 1 cut(s) 212
HinfI GANTC 3 cut(s) 248, 255, 277
Hpy188III TCNNGA 2 cut(s) 214, 252
HpyAV CCTTC 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 15, 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 2 cut(s) 47, 140
Hsp92II CATG 1 cut(s) 212
LguI GCTCTTC 2 cut(s) 101, 282
LpnPI CCDG 6 cut(s) 8, 73, 84, 127, 185, 211
Lsp1109I GCAGC 1 cut(s) 27
MboII GAAGA 2 cut(s) 118, 299
MfeI CAATTG 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 2 cut(s) 157, 217
MlyI GAGTC 1 cut(s) 249
MnlI CCTC 2 cut(s) 161, 264
MroXI GAANNNNTTC 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 18
MunI CAATTG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 168
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 196
PciSI GCTCTTC 2 cut(s) 101, 282
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 248, 277
PkrI GCNGC 1 cut(s) 17
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 194
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SapI GCTCTTC 2 cut(s) 101, 282
SatI GCNGC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 1 cut(s) 249
SduI GDGCHC 1 cut(s) 113
SetI ASST 2 cut(s) 72, 294
SinI GGWCC 1 cut(s) 194
Sse9I AATT 2 cut(s) 157, 217
SsiI CCGC 1 cut(s) 18
TasI AATT 2 cut(s) 157, 217
TatI WGTACW 1 cut(s) 265
TfiI GAWTC 2 cut(s) 248, 277
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 3 cut(s) 197, 237, 261
VpaK11BI GGWCC 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.