MD08G1038400.v1.1

Cytochrome c oxidase assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0018333
Physical Location & Seq
Reverse (-)
2816143 .. 2817667
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1038400.v1.1.491

Sequence Viewer

Length: 216 bp
ATGGCAAAGTCTTGCAAGGGCCTGGCAACAGAATTGGTCAAATGTCTTAGTGAGTGTGACTGCATTAAGGTTGAGAAGCGGTCGTTTAGGGAGTGTGCTGGGGAAAAGAGTCCATCAATATCAAGCGAATGTATTGGTCTGAGGGAAACGTACTTCAATTGCAAAAGAGGGCAGGTTGACATGAGGGCCAGGATTCGGGGGAATAAAGGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Pet191_N

Protein Analysis

72

Amino Acids

7.97

Weight (kDa)

9.1

Isoelectric Point (pI)

65.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pet191_N PF10203 3 - 68 3.1e-23 Cytochrome c oxidase assembly protein PET191
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10865 AT1G10865
fragaria_vesca FvH4_2g40490
malus_domestica MD00G1038600.v1.1 MD08G1038400.v1.1
prunus_persica Prupe.1G386000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0300241
rosa_roxburghii Rroxscaffold_7G00167980
rosa_samantha Rh6AG406600
rosa_wichuraiana Rw6G035580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 163
AciI CCGC 1 cut(s) 79
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 1 cut(s) 157
AjnI CCWGG 2 cut(s) 21, 188
AoxI GGCC 2 cut(s) 19, 186
AspS9I GGNCC 2 cut(s) 19, 186
BccI CCATC 1 cut(s) 121
BciT130I CCWGG 2 cut(s) 23, 190
BfuAI ACCTGC 1 cut(s) 163
Bme1390I CCNGG 2 cut(s) 23, 190
BmgT120I GGNCC 2 cut(s) 19, 186
BmrFI CCNGG 2 cut(s) 23, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 195
BseBI CCWGG 2 cut(s) 23, 190
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 131
BseYI CCCAGC 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 21, 188
BsiEI CGRYCG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 195
BsnI GGCC 2 cut(s) 21, 188
BspACI CCGC 1 cut(s) 79
BspANI GGCC 2 cut(s) 21, 188
BspCNI CTCAG 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 163
Bst2UI CCWGG 2 cut(s) 23, 190
BstDEI CTNAG 2 cut(s) 47, 140
BstMCI CGRYCG 1 cut(s) 83
BstNI CCWGG 2 cut(s) 23, 190
BstSCI CCNGG 2 cut(s) 21, 188
BsuRI GGCC 2 cut(s) 21, 188
BveI ACCTGC 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 19, 186
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 181
CviJI RGCY 3 cut(s) 21, 188, 210
CviKI_1 RGCY 3 cut(s) 21, 188, 210
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 2 cut(s) 47, 140
EcoO109I RGGNCCY 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 21, 188
FaeI CATG 1 cut(s) 184
FaiI YATR 1 cut(s) 182
FatI CATG 1 cut(s) 180
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 2 cut(s) 21, 188
Hin1II CATG 1 cut(s) 184
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 2 cut(s) 109, 193
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 141
Hpy8I GTNNAC 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 3 cut(s) 15, 63, 162
HpyF3I CTNAG 2 cut(s) 47, 140
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 1 cut(s) 184
LpnPI CCDG 6 cut(s) 8, 35, 84, 158, 175, 202
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 56
MfeI CAATTG 1 cut(s) 157
MluCI AATT 2 cut(s) 32, 157
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 3 cut(s) 135, 161, 177
MseI TTAA 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 23, 190
MunI CAATTG 1 cut(s) 157
MvaI CCWGG 2 cut(s) 23, 190
NlaIII CATG 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 193
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Psp6I CCWGG 2 cut(s) 21, 188
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 21, 188
PspPI GGNCC 2 cut(s) 19, 186
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 66
Sau96I GGNCC 2 cut(s) 19, 186
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 23, 190
SetI ASST 3 cut(s) 72, 152, 177
Sse9I AATT 2 cut(s) 32, 157
SsiI CCGC 1 cut(s) 79
StyD4I CCNGG 2 cut(s) 21, 188
TaiI ACGT 1 cut(s) 152
TasI AATT 2 cut(s) 32, 157
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.