AT1G11710

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0019132
Physical Location & Seq
Forward (+)
3948714 .. 3951359
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11710.1

Sequence Viewer

Length: 1974 bp
ATGTTCGGTCACGTTTTCTCCAGAAGAACGAGCTTCCTGGTACGTTGCTTTCACGTTGCTAAGAAATTCTCGAATCCTGAGCCGGAAGATATTCTCTTTAGTGCTCTCTGTTTGAATTTAAGACAGAGAAGATGGAACACTCTTCATCAATTCTCCTCGAGTCTCACAAATCCGTTGATAAGTCGAGTTCTTCGCGAGTTTCGAAGCTCGCCGAAGTTAGCTCTAGAGTTCTACAATTGGGTTTTAAGGAGTAACACTGTGGCTAAGTCTGAGAATCGATTCGAAGCCTCTTGTGTGATGATTCATTTGCTGGTTGGTTCGAGAAGATTTGATGATGCTTTATCAATAATGGCGAATTTGATGTCTGTAGAAGGTGAAAAGTTGAGTCCTTTACATGTTTTGTCGGGTTTGATTCGAAGTTACCAAGCTTGTGGTTCGAGTCCTGATGTGTTTGATTCATTGGTTAGAGCTTGTACACAGAATGGTGATGCGCAAGGAGCTTATGAAGTGATTGAGCAGACGAGAGCAGAAGGTTTTTGTGTTTCTGTTCATGCGTTGAATAATTTTATGGGTTGTTTATTGAATGTGAATGAGATTGATAGGTTTTGGAAGGTTTACAAGGAAATGGATTCTTTAGGGTATGTTGAGAATGTGAATACATTTAATCTGGTTATATATTCGTTTTGTAAGGAGAGTAAGTTGTTTGAAGCGTTATCTGTGTTTTACCGGATGTTGAAATGTGGGGTTTGGCCTAATGTTGTTAGCTTTAATATGATGATTGATGGAGCTTGTAAGACGGGTGATATGAGATTTGCCTTGCAGCTTTTAGGGAAGATGGGAATGATGTCTGGAAACTTTGTTTCACCTAATGCTGTGACGTACAATTCTGTTATCAACGGGTTTTGCAAGGCCGGGAGATTGGATTTGGCGGAAAGAATCCGTGGTGACATGGTCAAATCAGGTGTTGATTGCAATGAAAGAACCTATGGAGCTTTGGTGGATGCGTATGGTAGAGCTGGAAGCTCAGATGAAGCCTTAAGGTTGTGTGATGAGATGACGAGTAAGGGACTTGTGGTAAATACAGTTATCTATAACTCTATTGTTTATTGGCTGTTTATGGAAGGTGACATAGAAGGAGCTATGTCTGTGTTGCGTGATATGAATAGTAAAAATATGCAAATTGATCGATTTACTCAAGCCATTGTTGTCAGAGGTCTATGCAGAAACGGATATGTAAAGGAAGCTGTTGAGTTTCAGAGACAGATTTCAGAGAAGAAGCTCGTGGAAGATATAGTTTGTCACAACACGCTTATGCACCATTTTGTAAGGGATAAAAAGCTGGCGTGTGCTGATCAGATTCTAGGGAGTATGTTGGTTCAAGGTTTGAGTCTCGATGCGATTTCGTTTGGTACTTTGATTGATGGATACCTAAAGGAAGGTAAGTTGGAAAGAGCTCTCGAGATATATGATGGTATGATCAAGATGAATAAAACATCGAATCTTGTGATTTACAATTCAATTGTGAATGGATTAAGTAAAAGAGGAATGGCTGGTGCAGCTGAAGCAGTTGTGAACGCTATGGAAATCAAGGACATTGTAACTTACAACACGCTGTTGAACGAGTCTCTCAAAACCGGGAATGTCGAAGAAGCTGACGATATCTTATCTAAAATGCAGAAACAGGACGGTGAGAAATCGGTTAGTCTTGTGACTTTCAACATTATGATCAATCACTTATGCAAGTTTGGTTCTTATGAGAAAGCGAAGGAAGTTTTGAAGTTTATGGTTGAAAGAGGTGTTGTTCCGGATTCTATAACATATGGAACTTTGATTACATCGTTTAGTAAGCATCGCAGTCAAGAAAAAGTCGTTGAGCTTCATGATTACTTGATTCTTCAAGGAGTTACACCTCATGAACATATATATCTATCTATAGTTCGTCCTCTTCTTGATAGAGAAAATGGAAGGCCTTAG

Protein Analysis

657

Amino Acids

73.98

Weight (kDa)

7.5

Isoelectric Point (pI)

35.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 204 - 343 7.7e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 205 - 261 4.6e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 217 - 265 2e-10 PPR repeat family
PPR_1 PF12854 248 - 279 6.9e-07 PPR repeat
PPR_1 PF12854 287 - 317 1.6e-11 PPR repeat
PPR_2 PF13041 289 - 336 6.6e-14 PPR repeat family
PPR PF01535 292 - 322 5.1e-08 PPR repeat
TPR_24 PF23276 296 - 418 1.8e-10 Fungal tetratrico peptide repeats
PPR_1 PF12854 321 - 353 2e-06 PPR repeat
PPR PF01535 328 - 357 3.2e-06 PPR repeat
PPR_2 PF13041 360 - 408 2.3e-09 PPR repeat family
PPR_2 PF13041 530 - 561 4.1e-06 PPR repeat family
PPR_2 PF13041 569 - 616 1.3e-13 PPR repeat family
PPR_1 PF12854 569 - 596 9.6e-06 PPR repeat
PPR PF01535 570 - 600 3.1e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11710 AT1G11710
malus_domestica MD02G1262300.v1.1 MD07G1057900.v1.1 MD07G1059400.v1.1
prunus_persica Prupe.2G064100_v2.0.a1
pyrus_communis pycom02g22430 pycom07g04410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 492
AccII CGCG 1 cut(s) 195
AccIII TCCGGA 1 cut(s) 1804
AciI CCGC 1 cut(s) 929
AcsI RAATTY 3 cut(s) 65, 115, 355
AcuI CTGAAG 1 cut(s) 1581
AfaI GTAC 4 cut(s) 42, 475, 881, 1411
AflII CTTAAG 1 cut(s) 1036
AflIII ACRYGT 1 cut(s) 394
AjnI CCWGG 1 cut(s) 36
Alw21I GWGCWC 2 cut(s) 106, 1456
Alw26I GTCTC 4 cut(s) 167, 1252, 1394, 1629
Ama87I CYCGRG 2 cut(s) 157, 1457
Aor13HI TCCGGA 1 cut(s) 1804
AoxI GGCC 3 cut(s) 749, 909, 1967
ApeKI GCWGC 2 cut(s) 820, 1556
ApoI RAATTY 3 cut(s) 65, 115, 355
ArsI GACNNNNNNTTYG 2 cut(s) 347, 379
Asp700I GAANNNNTTC 2 cut(s) 90, 278
AspLEI GCGC 1 cut(s) 493
AsuC2I CCSGG 2 cut(s) 913, 1636
AsuHPI GGTGA 7 cut(s) 386, 497, 812, 855, 956, 1136, 1700
AsuII TTCGAA 3 cut(s) 202, 282, 415
AvaI CYCGRG 2 cut(s) 157, 1457
BanII GRGCYC 1 cut(s) 1456
BauI CACGAG 1 cut(s) 1280
Bbv12I GWGCWC 2 cut(s) 106, 1456
BbvI GCAGC 2 cut(s) 832, 1568
BccI CCATC 5 cut(s) 126, 776, 829, 1415, 1463
BcgI CGANNNNNNTGC 2 cut(s) 1166, 1200
BciT130I CCWGG 1 cut(s) 38
BciVI GTATCC 1 cut(s) 1418
BclI TGATCA 3 cut(s) 1351, 1476, 1725
BcnI CCSGG 2 cut(s) 913, 1636
BcoDI GTCTC 4 cut(s) 167, 1252, 1394, 1629
BfaI CTAG 2 cut(s) 224, 1361
BfmI CTRYAG 2 cut(s) 366, 1932
BfrI CTTAAG 1 cut(s) 1036
BfuI GTATCC 1 cut(s) 1418
BisI GCNGC 2 cut(s) 821, 1557
BlsI GCNGC 2 cut(s) 822, 1558
Bme1390I CCNGG 3 cut(s) 38, 913, 1636
BmeT110I CYCGRG 2 cut(s) 157, 1457
BmrFI CCNGG 3 cut(s) 38, 913, 1636
BmsI GCATC 5 cut(s) 325, 478, 991, 1384, 1858
BpmI CTGGAG 1 cut(s) 4
Bpu10I CCTNAGC 1 cut(s) 78
Bpu14I TTCGAA 3 cut(s) 202, 282, 415
BpuEI CTTGAG 1 cut(s) 1179
BpuMI CCSGG 2 cut(s) 913, 1636
Bsa29I ATCGAT 2 cut(s) 277, 1186
BsaJI CCNNGG 1 cut(s) 940
BsaWI WCCGGW 2 cut(s) 726, 1804
BsaXI ACNNNNNCTCC 5 cut(s) 32, 683, 713, 981, 1011
Bse3DI GCAATG 1 cut(s) 979
BseAI TCCGGA 1 cut(s) 1804
BseBI CCWGG 1 cut(s) 38
BseCI ATCGAT 2 cut(s) 277, 1186
BseDI CCNNGG 1 cut(s) 940
BseGI GGATG 2 cut(s) 735, 1006
BseMI GCAATG 1 cut(s) 979
BseMII CTCAG 3 cut(s) 69, 261, 1038
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 2 cut(s) 832, 1568
BsgI GTGCAG 1 cut(s) 1575
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 3 cut(s) 751, 911, 1969
BshVI ATCGAT 2 cut(s) 277, 1186
BsiHKAI GWGCWC 2 cut(s) 106, 1456
BsiHKCI CYCGRG 2 cut(s) 157, 1457
BsiSI CCGG 5 cut(s) 83, 727, 912, 1635, 1805
BslFI GGGAC 1 cut(s) 1080
BsmAI GTCTC 4 cut(s) 167, 1252, 1394, 1629
BsmFI GGGAC 1 cut(s) 1080
BsnI GGCC 3 cut(s) 751, 911, 1969
BsoBI CYCGRG 2 cut(s) 157, 1457
Bsp119I TTCGAA 3 cut(s) 202, 282, 415
Bsp1286I GDGCHC 2 cut(s) 106, 1456
Bsp13I TCCGGA 1 cut(s) 1804
Bsp1407I TGTACA 1 cut(s) 473
Bsp143I GATC 4 cut(s) 1183, 1351, 1476, 1725
Bsp68I TCGCGA 1 cut(s) 195
BspACI CCGC 1 cut(s) 929
BspANI GGCC 3 cut(s) 751, 911, 1969
BspCNI CTCAG 3 cut(s) 70, 262, 1037
BspDI ATCGAT 2 cut(s) 277, 1186
BspEI TCCGGA 1 cut(s) 1804
BspFNI CGCG 1 cut(s) 195
BspHI TCATGA 2 cut(s) 1879, 1912
BspT104I TTCGAA 3 cut(s) 202, 282, 415
BspTI CTTAAG 1 cut(s) 1036
BsrDI GCAATG 1 cut(s) 979
BsrGI TGTACA 1 cut(s) 473
BssECI CCNNGG 1 cut(s) 940
BssMI GATC 4 cut(s) 1183, 1351, 1476, 1725
BssSI CACGAG 1 cut(s) 1280
Bst2BI CACGAG 1 cut(s) 1280
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 3 cut(s) 259, 1084, 1688
Bst6I CTCTTC 2 cut(s) 147, 1950
BstAFI CTTAAG 1 cut(s) 1036
BstAUI TGTACA 1 cut(s) 473
BstBI TTCGAA 3 cut(s) 202, 282, 415
BstC8I GCNNGC 2 cut(s) 209, 1341
BstDEI CTNAG 6 cut(s) 60, 78, 264, 270, 1024, 1971
BstDSI CCRYGG 1 cut(s) 940
BstF5I GGATG 2 cut(s) 735, 1006
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 493
BstKTI GATC 4 cut(s) 1186, 1354, 1479, 1728
BstMAI GTCTC 4 cut(s) 167, 1252, 1394, 1629
BstMBI GATC 4 cut(s) 1183, 1351, 1476, 1725
BstMWI GCNNNNNNNGC 3 cut(s) 497, 1556, 1562
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 3 cut(s) 36, 911, 1634
BstSFI CTRYAG 2 cut(s) 366, 1932
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 832, 1568
BstXI CCANNNNNNTGG 1 cut(s) 431
Bsu15I ATCGAT 2 cut(s) 277, 1186
BsuI GTATCC 1 cut(s) 1418
BsuRI GGCC 3 cut(s) 751, 911, 1969
BsuTUI ATCGAT 2 cut(s) 277, 1186
BtgI CCRYGG 1 cut(s) 940
BtgZI GCGATG 1 cut(s) 1835
BtsCI GGATG 2 cut(s) 735, 1006
BtsIMutI CAGTG 1 cut(s) 255
BtuMI TCGCGA 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 209, 1341
CciI TCATGA 2 cut(s) 1879, 1912
CfoI GCGC 1 cut(s) 493
ClaI ATCGAT 2 cut(s) 277, 1186
Csp6I GTAC 4 cut(s) 41, 474, 880, 1410
CviAII CATG 5 cut(s) 395, 551, 949, 1880, 1913
CviQI GTAC 4 cut(s) 41, 474, 880, 1410
DdeI CTNAG 6 cut(s) 60, 78, 264, 270, 1024, 1971
DpnI GATC 4 cut(s) 1185, 1353, 1478, 1727
DpnII GATC 4 cut(s) 1183, 1351, 1476, 1725
Eam1104I CTCTTC 2 cut(s) 147, 1950
EarI CTCTTC 2 cut(s) 147, 1950
EciI GGCGGA 1 cut(s) 944
Ecl136II GAGCTC 1 cut(s) 1454
Eco147I AGGCCT 1 cut(s) 1969
Eco24I GRGCYC 1 cut(s) 1456
Eco32I GATATC 1 cut(s) 1660
Eco53kI GAGCTC 1 cut(s) 1454
Eco57I CTGAAG 1 cut(s) 1581
Eco88I CYCGRG 2 cut(s) 157, 1457
EcoICRI GAGCTC 1 cut(s) 1454
EcoRII CCWGG 1 cut(s) 36
EcoRV GATATC 1 cut(s) 1660
EcoT38I GRGCYC 1 cut(s) 1456
FaeI CATG 5 cut(s) 398, 554, 952, 1883, 1916
FaqI GGGAC 1 cut(s) 1080
FatI CATG 5 cut(s) 394, 550, 948, 1879, 1912
FauNDI CATATG 1 cut(s) 1819
FbaI TGATCA 3 cut(s) 1351, 1476, 1725
Fnu4HI GCNGC 2 cut(s) 821, 1557
FokI GGATG 2 cut(s) 742, 1013
FriOI GRGCYC 1 cut(s) 1456
Fsp4HI GCNGC 2 cut(s) 821, 1557
FspBI CTAG 2 cut(s) 224, 1361
FspI TGCGCA 1 cut(s) 492
GlaI GCGC 1 cut(s) 492
GluI GCNGC 2 cut(s) 821, 1557
GsuI CTGGAG 1 cut(s) 4
HaeIII GGCC 3 cut(s) 751, 911, 1969
HapII CCGG 5 cut(s) 83, 727, 912, 1635, 1805
HhaI GCGC 1 cut(s) 493
Hin1II CATG 5 cut(s) 398, 554, 952, 1883, 1916
Hin6I GCGC 1 cut(s) 491
HinP1I GCGC 1 cut(s) 491
HindIII AAGCTT 1 cut(s) 426
HpaII CCGG 5 cut(s) 83, 727, 912, 1635, 1805
HphI GGTGA 7 cut(s) 386, 497, 812, 855, 956, 1136, 1700
Hpy166II GTNNAC 3 cut(s) 476, 616, 1573
Hpy188I TCNGA 6 cut(s) 271, 1027, 1211, 1257, 1270, 1356
Hpy8I GTNNAC 3 cut(s) 476, 616, 1573
HpyAV CCTTC 8 cut(s) 365, 524, 604, 1115, 1127, 1430, 1759, 1959
HpyCH4III ACNGT 3 cut(s) 259, 1084, 1688
HpyCH4IV ACGT 4 cut(s) 12, 43, 54, 878
HpyCH4V TGCA 9 cut(s) 820, 906, 972, 1177, 1221, 1315, 1556, 1675, 1740
HpyF10VI GCNNNNNNNGC 3 cut(s) 497, 1556, 1562
HpyF3I CTNAG 6 cut(s) 60, 78, 264, 270, 1024, 1971
HpySE526I ACGT 4 cut(s) 12, 43, 54, 878
Hsp92II CATG 5 cut(s) 398, 554, 952, 1883, 1916
HspAI GCGC 1 cut(s) 491
Kpn2I TCCGGA 1 cut(s) 1804
Ksp22I TGATCA 3 cut(s) 1351, 1476, 1725
Kzo9I GATC 4 cut(s) 1183, 1351, 1476, 1725
LmnI GCTCC 4 cut(s) 497, 785, 989, 1136
Lsp1109I GCAGC 2 cut(s) 832, 1568
LweI GCATC 5 cut(s) 325, 478, 991, 1384, 1858
MaeI CTAG 2 cut(s) 224, 1361
MaeII ACGT 4 cut(s) 12, 43, 54, 878
MalI GATC 4 cut(s) 1185, 1353, 1478, 1727
MboI GATC 4 cut(s) 1183, 1351, 1476, 1725
MfeI CAATTG 2 cut(s) 235, 1518
MhlI GDGCHC 2 cut(s) 106, 1456
MlyI GAGTC 5 cut(s) 169, 394, 448, 1396, 1631
MmeI TCCRAC 1 cut(s) 1425
MnlI CCTC 7 cut(s) 166, 298, 1205, 1535, 1787, 1920, 1953
MroI TCCGGA 1 cut(s) 1804
MroXI GAANNNNTTC 2 cut(s) 90, 278
MseI TTAA 6 cut(s) 119, 245, 663, 768, 1037, 1532
MslI CAYNNNNRTG 1 cut(s) 1310
MspA1I CMGCKG 1 cut(s) 1559
MspCI CTTAAG 1 cut(s) 1036
MspI CCGG 5 cut(s) 83, 727, 912, 1635, 1805
MspR9I CCNGG 3 cut(s) 38, 913, 1636
MunI CAATTG 2 cut(s) 235, 1518
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 3 cut(s) 497, 1556, 1562
NciI CCSGG 2 cut(s) 913, 1636
NdeI CATATG 1 cut(s) 1819
NdeII GATC 4 cut(s) 1183, 1351, 1476, 1725
NlaIII CATG 5 cut(s) 398, 554, 952, 1883, 1916
NmuCI GTSAC 6 cut(s) 8, 874, 944, 1124, 1298, 1708
NruI TCGCGA 1 cut(s) 195
NsbI TGCGCA 1 cut(s) 492
NspI RCATGY 1 cut(s) 398
NspV TTCGAA 3 cut(s) 202, 282, 415
PaeR7I CTCGAG 2 cut(s) 157, 1457
PagI TCATGA 2 cut(s) 1879, 1912
PceI AGGCCT 1 cut(s) 1969
PciI ACATGT 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PdmI GAANNNNTTC 2 cut(s) 90, 278
PflFI GACNNNGTC 1 cut(s) 950
PkrI GCNGC 2 cut(s) 822, 1558
PleI GAGTC 5 cut(s) 168, 393, 447, 1395, 1630
PpsI GAGTC 5 cut(s) 168, 393, 447, 1395, 1630
PscI ACATGT 1 cut(s) 394
Psp124BI GAGCTC 1 cut(s) 1456
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspXI VCTCGAGB 1 cut(s) 157
PsrI GAACNNNNNNTAC 2 cut(s) 1816, 1848
PsyI GACNNNGTC 1 cut(s) 950
PvuII CAGCTG 1 cut(s) 1559
RruI TCGCGA 1 cut(s) 195
RsaI GTAC 4 cut(s) 42, 475, 881, 1411
RsaNI GTAC 4 cut(s) 41, 474, 880, 1410
RseI CAYNNNNRTG 1 cut(s) 1310
SacI GAGCTC 1 cut(s) 1456
SaqAI TTAA 6 cut(s) 119, 245, 663, 768, 1037, 1532
SatI GCNGC 2 cut(s) 821, 1557
Sau3AI GATC 4 cut(s) 1183, 1351, 1476, 1725
SchI GAGTC 5 cut(s) 169, 394, 448, 1396, 1631
ScrFI CCNGG 3 cut(s) 38, 913, 1636
SduI GDGCHC 2 cut(s) 106, 1456
SfaNI GCATC 5 cut(s) 325, 478, 991, 1384, 1858
SfcI CTRYAG 2 cut(s) 366, 1932
Sfr274I CTCGAG 2 cut(s) 157, 1457
SfuI TTCGAA 3 cut(s) 202, 282, 415
SlaI CTCGAG 2 cut(s) 157, 1457
SmiMI CAYNNNNRTG 1 cut(s) 1310
SmlI CTYRAG 4 cut(s) 157, 1036, 1194, 1457
SmoI CTYRAG 4 cut(s) 157, 1036, 1194, 1457
SseBI AGGCCT 1 cut(s) 1969
SsiI CCGC 1 cut(s) 929
SspMI CTAG 2 cut(s) 224, 1361
SstI GAGCTC 1 cut(s) 1456
StuI AGGCCT 1 cut(s) 1969
StyD4I CCNGG 3 cut(s) 36, 911, 1634
TaaI ACNGT 3 cut(s) 259, 1084, 1688
TaiI ACGT 4 cut(s) 15, 46, 57, 881
TatI WGTACW 1 cut(s) 473
Tru1I TTAA 6 cut(s) 119, 245, 663, 768, 1037, 1532
Tru9I TTAA 6 cut(s) 119, 245, 663, 768, 1037, 1532
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 6 cut(s) 8, 874, 944, 1124, 1298, 1708
TseI GCWGC 2 cut(s) 820, 1556
Tsp45I GTSAC 6 cut(s) 8, 874, 944, 1124, 1298, 1708
TspGWI ACGGA 3 cut(s) 162, 929, 1242
TspRI CASTG 1 cut(s) 262
Tth111I GACNNNGTC 1 cut(s) 950
Vha464I CTTAAG 1 cut(s) 1036
XapI RAATTY 3 cut(s) 65, 115, 355
XbaI TCTAGA 1 cut(s) 223
XceI RCATGY 1 cut(s) 398
XhoI CTCGAG 2 cut(s) 157, 1457
XmnI GAANNNNTTC 2 cut(s) 90, 278
XspI CTAG 2 cut(s) 224, 1361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.