Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G11710 AT1G11710 |
| malus_domestica | MD02G1262300.v1.1 MD07G1057900.v1.1 MD07G1059400.v1.1 |
| prunus_persica | Prupe.2G064100_v2.0.a1 |
| pyrus_communis | pycom02g22430 pycom07g04410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 1805, 1823, 1964, 2157 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 353 |
| AatII | GACGTC | 1 cut(s) | 2339 |
| AccB1I | GGYRCC | 1 cut(s) | 240 |
| AccII | CGCG | 2 cut(s) | 306, 456 |
| AciI | CCGC | 5 cut(s) | 238, 278, 304, 306, 473 |
| AclI | AACGTT | 1 cut(s) | 2180 |
| AclWI | GGATC | 1 cut(s) | 1553 |
| AcsI | RAATTY | 4 cut(s) | 488, 1427, 1842, 2070 |
| AcyI | GRCGYC | 2 cut(s) | 241, 2336 |
| AfaI | GTAC | 4 cut(s) | 547, 581, 715, 2107 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1450, 1525 |
| AgeI | ACCGGT | 1 cut(s) | 2352 |
| AhlI | ACTAGT | 1 cut(s) | 662 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 749, 781 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1638, 1670 |
| AluBI | AGCT | 6 cut(s) | 32, 81, 221, 267, 760, 1379 |
| AluI | AGCT | 6 cut(s) | 32, 81, 221, 267, 760, 1379 |
| Alw26I | GTCTC | 2 cut(s) | 219, 600 |
| AlwI | GGATC | 1 cut(s) | 1553 |
| AoxI | GGCC | 2 cut(s) | 480, 989 |
| ApeKI | GCWGC | 2 cut(s) | 127, 2004 |
| ApoI | RAATTY | 4 cut(s) | 488, 1427, 1842, 2070 |
| AseI | ATTAAT | 1 cut(s) | 1134 |
| AsiGI | ACCGGT | 1 cut(s) | 2352 |
| AspLEI | GCGC | 1 cut(s) | 243 |
| AsuC2I | CCSGG | 1 cut(s) | 2009 |
| AsuHPI | GGTGA | 9 cut(s) | 203, 324, 760, 1052, 1423, 1591, 1714, 1852, 2349 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1111, 1144 |
| BanI | GGYRCC | 1 cut(s) | 240 |
| BanII | GRGCYC | 2 cut(s) | 113, 1458 |
| BbsI | GAAGAC | 2 cut(s) | 302, 349 |
| BbvI | GCAGC | 2 cut(s) | 139, 2016 |
| BceAI | ACGGC | 2 cut(s) | 251, 429 |
| BciVI | GTATCC | 1 cut(s) | 17 |
| BclI | TGATCA | 3 cut(s) | 750, 1875, 2314 |
| BcnI | CCSGG | 1 cut(s) | 2009 |
| BcoDI | GTCTC | 2 cut(s) | 219, 600 |
| BcuI | ACTAGT | 1 cut(s) | 662 |
| BfaI | CTAG | 8 cut(s) | 84, 573, 663, 944, 993, 1235, 1461, 2138 |
| BfmI | CTRYAG | 2 cut(s) | 76, 684 |
| BfoI | RGCGCY | 1 cut(s) | 244 |
| BfuI | GTATCC | 1 cut(s) | 17 |
| BisI | GCNGC | 5 cut(s) | 128, 239, 304, 473, 2005 |
| BlsI | GCNGC | 5 cut(s) | 129, 240, 305, 474, 2006 |
| Bme1390I | CCNGG | 1 cut(s) | 2009 |
| BmiI | GGNNCC | 3 cut(s) | 242, 261, 1953 |
| BmrFI | CCNGG | 1 cut(s) | 2009 |
| BmrI | ACTGGG | 2 cut(s) | 265, 508 |
| BmsI | GCATC | 5 cut(s) | 139, 187, 577, 685, 1751 |
| BmuI | ACTGGG | 2 cut(s) | 265, 508 |
| BpiI | GAAGAC | 2 cut(s) | 302, 349 |
| BpuEI | CTTGAG | 2 cut(s) | 201, 1529 |
| BpuMI | CCSGG | 1 cut(s) | 2009 |
| Bsa29I | ATCGAT | 2 cut(s) | 567, 1548 |
| BsaHI | GRCGYC | 2 cut(s) | 241, 2336 |
| BsaI | GGTCTC | 1 cut(s) | 219 |
| BsaJI | CCNNGG | 3 cut(s) | 304, 732, 1194 |
| BsaWI | WCCGGW | 1 cut(s) | 2352 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1450, 1525 |
| Bse118I | RCCGGY | 1 cut(s) | 2352 |
| Bse1I | ACTGG | 5 cut(s) | 207, 260, 429, 503, 2299 |
| Bse3DI | GCAATG | 2 cut(s) | 2019, 2024 |
| BseCI | ATCGAT | 2 cut(s) | 567, 1548 |
| BseDI | CCNNGG | 3 cut(s) | 304, 732, 1194 |
| BseGI | GGATG | 9 cut(s) | 646, 775, 975, 1041, 1503, 1534, 1791, 1795, 2253 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1450, 1525 |
| BseMI | GCAATG | 2 cut(s) | 2019, 2024 |
| BseMII | CTCAG | 3 cut(s) | 539, 752, 1362 |
| BseNI | ACTGG | 5 cut(s) | 207, 260, 429, 503, 2299 |
| BseRI | GAGGAG | 1 cut(s) | 403 |
| BseXI | GCAGC | 2 cut(s) | 139, 2016 |
| BsgI | GTGCAG | 1 cut(s) | 1671 |
| Bsh1236I | CGCG | 2 cut(s) | 306, 456 |
| BshFI | GGCC | 2 cut(s) | 482, 991 |
| BshNI | GGYRCC | 1 cut(s) | 240 |
| BshTI | ACCGGT | 1 cut(s) | 2352 |
| BshVI | ATCGAT | 2 cut(s) | 567, 1548 |
| BsiSI | CCGG | 2 cut(s) | 2009, 2353 |
| BslFI | GGGAC | 1 cut(s) | 740 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1450, 1525 |
| BsmAI | GTCTC | 2 cut(s) | 219, 600 |
| BsmFI | GGGAC | 1 cut(s) | 740 |
| BsmI | GAATGC | 1 cut(s) | 938 |
| BsnI | GGCC | 2 cut(s) | 482, 991 |
| Bso31I | GGTCTC | 1 cut(s) | 219 |
| Bsp1286I | GDGCHC | 2 cut(s) | 113, 1458 |
| Bsp143I | GATC | 6 cut(s) | 564, 750, 1545, 1549, 1875, 2314 |
| Bsp68I | TCGCGA | 1 cut(s) | 456 |
| BspACI | CCGC | 5 cut(s) | 238, 278, 304, 306, 473 |
| BspANI | GGCC | 2 cut(s) | 482, 991 |
| BspCNI | CTCAG | 3 cut(s) | 538, 753, 1363 |
| BspDI | ATCGAT | 2 cut(s) | 567, 1548 |
| BspFNI | CGCG | 2 cut(s) | 306, 456 |
| BspLI | GGNNCC | 3 cut(s) | 242, 261, 1953 |
| BspMAI | CTGCAG | 1 cut(s) | 688 |
| BspPI | GGATC | 1 cut(s) | 1553 |
| BspT107I | GGYRCC | 1 cut(s) | 240 |
| BspTNI | GGTCTC | 1 cut(s) | 219 |
| BsrDI | GCAATG | 2 cut(s) | 2019, 2024 |
| BsrFI | RCCGGY | 1 cut(s) | 2352 |
| BsrI | ACTGG | 5 cut(s) | 207, 260, 429, 503, 2299 |
| BssAI | RCCGGY | 1 cut(s) | 2352 |
| BssECI | CCNNGG | 3 cut(s) | 304, 732, 1194 |
| BssMI | GATC | 6 cut(s) | 564, 750, 1545, 1549, 1875, 2314 |
| BssNI | GRCGYC | 2 cut(s) | 241, 2336 |
| Bst4CI | ACNGT | 5 cut(s) | 139, 550, 1097, 2088, 2105 |
| Bst6I | CTCTTC | 2 cut(s) | 971, 2403 |
| BstACI | GRCGYC | 2 cut(s) | 241, 2336 |
| BstC8I | GCNNGC | 1 cut(s) | 1030 |
| BstDEI | CTNAG | 5 cut(s) | 403, 484, 525, 761, 1371 |
| BstDSI | CCRYGG | 1 cut(s) | 304 |
| BstEII | GGTNACC | 1 cut(s) | 2355 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1448, 1523 |
| BstF5I | GGATG | 9 cut(s) | 646, 775, 975, 1041, 1503, 1534, 1791, 1795, 2253 |
| BstFNI | CGCG | 2 cut(s) | 306, 456 |
| BstH2I | RGCGCY | 1 cut(s) | 244 |
| BstHHI | GCGC | 1 cut(s) | 243 |
| BstKTI | GATC | 6 cut(s) | 567, 753, 1548, 1552, 1878, 2317 |
| BstMAI | GTCTC | 2 cut(s) | 219, 600 |
| BstMBI | GATC | 6 cut(s) | 564, 750, 1545, 1549, 1875, 2314 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 956 |
| BstNSI | RCATGY | 2 cut(s) | 23, 1032 |
| BstPI | GGTNACC | 1 cut(s) | 2355 |
| BstSCI | CCNGG | 1 cut(s) | 2007 |
| BstSFI | CTRYAG | 2 cut(s) | 76, 684 |
| BstUI | CGCG | 2 cut(s) | 306, 456 |
| BstV1I | GCAGC | 2 cut(s) | 139, 2016 |
| BstV2I | GAAGAC | 2 cut(s) | 302, 349 |
| Bsu15I | ATCGAT | 2 cut(s) | 567, 1548 |
| BsuI | GTATCC | 1 cut(s) | 17 |
| BsuRI | GGCC | 2 cut(s) | 482, 991 |
| BsuTUI | ATCGAT | 2 cut(s) | 567, 1548 |
| BtgI | CCRYGG | 1 cut(s) | 304 |
| BtgZI | GCGATG | 1 cut(s) | 1302 |
| BtsCI | GGATG | 9 cut(s) | 646, 775, 975, 1041, 1503, 1534, 1791, 1795, 2253 |
| BtsI | GCAGTG | 2 cut(s) | 693, 1624 |
| BtsIMutI | CAGTG | 7 cut(s) | 135, 200, 693, 1624, 1752, 2093, 2292 |
| BtuMI | TCGCGA | 1 cut(s) | 456 |
| Cac8I | GCNNGC | 1 cut(s) | 1030 |
| CfoI | GCGC | 1 cut(s) | 243 |
| Cfr10I | RCCGGY | 1 cut(s) | 2352 |
| Cfr42I | CCGCGG | 1 cut(s) | 307 |
| ClaI | ATCGAT | 2 cut(s) | 567, 1548 |
| Csp6I | GTAC | 4 cut(s) | 546, 580, 714, 2106 |
| CspAI | ACCGGT | 1 cut(s) | 2352 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1135, 1170, 1929, 1964 |
| CviQI | GTAC | 4 cut(s) | 546, 580, 714, 2106 |
| DdeI | CTNAG | 5 cut(s) | 403, 484, 525, 761, 1371 |
| DinI | GGCGCC | 1 cut(s) | 242 |
| DpnI | GATC | 6 cut(s) | 566, 752, 1547, 1551, 1877, 2316 |
| DpnII | GATC | 6 cut(s) | 564, 750, 1545, 1549, 1875, 2314 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 353 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 353 |
| Eam1104I | CTCTTC | 2 cut(s) | 971, 2403 |
| EarI | CTCTTC | 2 cut(s) | 971, 2403 |
| EciI | GGCGGA | 1 cut(s) | 267 |
| Eco24I | GRGCYC | 2 cut(s) | 113, 1458 |
| Eco31I | GGTCTC | 1 cut(s) | 219 |
| Eco32I | GATATC | 1 cut(s) | 414 |
| Eco91I | GGTNACC | 1 cut(s) | 2355 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1448, 1523 |
| EcoO65I | GGTNACC | 1 cut(s) | 2355 |
| EcoRI | GAATTC | 1 cut(s) | 1427 |
| EcoRV | GATATC | 1 cut(s) | 414 |
| EcoT22I | ATGCAT | 1 cut(s) | 2331 |
| EcoT38I | GRGCYC | 2 cut(s) | 113, 1458 |
| EgeI | GGCGCC | 1 cut(s) | 242 |
| EheI | GGCGCC | 1 cut(s) | 242 |
| FaqI | GGGAC | 1 cut(s) | 740 |
| FauNDI | CATATG | 1 cut(s) | 874 |
| FbaI | TGATCA | 3 cut(s) | 750, 1875, 2314 |
| Fnu4HI | GCNGC | 5 cut(s) | 128, 239, 304, 473, 2005 |
| FokI | GGATG | 9 cut(s) | 653, 782, 982, 1048, 1490, 1541, 1798, 1802, 2240 |
| FriOI | GRGCYC | 2 cut(s) | 113, 1458 |
| Fsp4HI | GCNGC | 5 cut(s) | 128, 239, 304, 473, 2005 |
| FspBI | CTAG | 8 cut(s) | 84, 573, 663, 944, 993, 1235, 1461, 2138 |
| GlaI | GCGC | 1 cut(s) | 242 |
| GluI | GCNGC | 5 cut(s) | 128, 239, 304, 473, 2005 |
| HaeII | RGCGCY | 1 cut(s) | 244 |
| HaeIII | GGCC | 2 cut(s) | 482, 991 |
| HapII | CCGG | 2 cut(s) | 2009, 2353 |
| HhaI | GCGC | 1 cut(s) | 243 |
| Hin1I | GRCGYC | 2 cut(s) | 241, 2336 |
| Hin6I | GCGC | 1 cut(s) | 241 |
| HinP1I | GCGC | 1 cut(s) | 241 |
| HindIII | AAGCTT | 3 cut(s) | 219, 265, 1377 |
| HinfI | GANTC | 8 cut(s) | 65, 536, 569, 607, 728, 787, 1772, 2164 |
| HpaII | CCGG | 2 cut(s) | 2009, 2353 |
| HphI | GGTGA | 9 cut(s) | 203, 324, 760, 1052, 1423, 1591, 1714, 1852, 2349 |
| Hpy166II | GTNNAC | 3 cut(s) | 505, 1330, 1583 |
| Hpy188I | TCNGA | 8 cut(s) | 297, 346, 465, 733, 969, 1090, 1396, 1659 |
| Hpy188III | TCNNGA | 8 cut(s) | 84, 229, 455, 754, 1589, 1796, 1955, 2062 |
| Hpy8I | GTNNAC | 3 cut(s) | 505, 1330, 1583 |
| Hpy99I | CGWCG | 1 cut(s) | 127 |
| HpyAV | CCTTC | 8 cut(s) | 129, 644, 910, 1054, 1355, 1628, 1678, 1921 |
| HpyCH4III | ACNGT | 5 cut(s) | 139, 550, 1097, 2088, 2105 |
| HpyCH4IV | ACGT | 2 cut(s) | 2180, 2336 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 956 |
| HpyF3I | CTNAG | 5 cut(s) | 403, 484, 525, 761, 1371 |
| HpySE526I | ACGT | 2 cut(s) | 2180, 2336 |
| Hsp92I | GRCGYC | 2 cut(s) | 241, 2336 |
| HspAI | GCGC | 1 cut(s) | 241 |
| KasI | GGCGCC | 1 cut(s) | 240 |
| Ksp22I | TGATCA | 3 cut(s) | 750, 1875, 2314 |
| KspI | CCGCGG | 1 cut(s) | 307 |
| Kzo9I | GATC | 6 cut(s) | 564, 750, 1545, 1549, 1875, 2314 |
| LmnI | GCTCC | 1 cut(s) | 1025 |
| Lsp1109I | GCAGC | 2 cut(s) | 139, 2016 |
| LweI | GCATC | 5 cut(s) | 139, 187, 577, 685, 1751 |
| MaeI | CTAG | 8 cut(s) | 84, 573, 663, 944, 993, 1235, 1461, 2138 |
| MaeII | ACGT | 2 cut(s) | 2180, 2336 |
| MaeIII | GTNAC | 8 cut(s) | 939, 1000, 1099, 1114, 1474, 1776, 1858, 2355 |
| MalI | GATC | 6 cut(s) | 566, 752, 1547, 1551, 1877, 2316 |
| MboI | GATC | 6 cut(s) | 564, 750, 1545, 1549, 1875, 2314 |
| MfeI | CAATTG | 1 cut(s) | 1123 |
| MhlI | GDGCHC | 2 cut(s) | 113, 1458 |
| Mly113I | GGCGCC | 1 cut(s) | 241 |
| MlyI | GAGTC | 3 cut(s) | 74, 616, 722 |
| MmeI | TCCRAC | 4 cut(s) | 93, 369, 1068, 1819 |
| Mph1103I | ATGCAT | 1 cut(s) | 2331 |
| MseI | TTAA | 7 cut(s) | 149, 375, 810, 822, 894, 1008, 1134 |
| MspA1I | CMGCKG | 1 cut(s) | 306 |
| MspI | CCGG | 2 cut(s) | 2009, 2353 |
| MspR9I | CCNGG | 1 cut(s) | 2009 |
| MunI | CAATTG | 1 cut(s) | 1123 |
| Mva1269I | GAATGC | 1 cut(s) | 938 |
| MvnI | CGCG | 2 cut(s) | 306, 456 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 956 |
| NarI | GGCGCC | 1 cut(s) | 241 |
| NciI | CCSGG | 1 cut(s) | 2009 |
| NdeI | CATATG | 1 cut(s) | 874 |
| NdeII | GATC | 6 cut(s) | 564, 750, 1545, 1549, 1875, 2314 |
| NlaIV | GGNNCC | 3 cut(s) | 242, 261, 1953 |
| NmuCI | GTSAC | 3 cut(s) | 1474, 1858, 2355 |
| NruI | TCGCGA | 1 cut(s) | 456 |
| NsiI | ATGCAT | 1 cut(s) | 2331 |
| NspI | RCATGY | 2 cut(s) | 23, 1032 |
| PaeI | GCATGC | 1 cut(s) | 1032 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 729 |
| PctI | GAATGC | 1 cut(s) | 938 |
| PfeI | GAWTC | 5 cut(s) | 536, 569, 787, 1772, 2164 |
| PinAI | ACCGGT | 1 cut(s) | 2352 |
| PkrI | GCNGC | 5 cut(s) | 129, 240, 305, 474, 2006 |
| PleI | GAGTC | 3 cut(s) | 73, 615, 722 |
| PluTI | GGCGCC | 1 cut(s) | 244 |
| PpsI | GAGTC | 3 cut(s) | 73, 615, 722 |
| PshBI | ATTAAT | 1 cut(s) | 1134 |
| PsiI | TTATAA | 4 cut(s) | 1805, 1823, 1964, 2157 |
| Psp1406I | AACGTT | 1 cut(s) | 2180 |
| PspEI | GGTNACC | 1 cut(s) | 2355 |
| PspN4I | GGNNCC | 3 cut(s) | 242, 261, 1953 |
| PstI | CTGCAG | 1 cut(s) | 688 |
| RruI | TCGCGA | 1 cut(s) | 456 |
| RsaI | GTAC | 4 cut(s) | 547, 581, 715, 2107 |
| RsaNI | GTAC | 4 cut(s) | 546, 580, 714, 2106 |
| SacII | CCGCGG | 1 cut(s) | 307 |
| SaqAI | TTAA | 7 cut(s) | 149, 375, 810, 822, 894, 1008, 1134 |
| SatI | GCNGC | 5 cut(s) | 128, 239, 304, 473, 2005 |
| Sau3AI | GATC | 6 cut(s) | 564, 750, 1545, 1549, 1875, 2314 |
| SchI | GAGTC | 3 cut(s) | 74, 616, 722 |
| ScrFI | CCNGG | 1 cut(s) | 2009 |
| SduI | GDGCHC | 2 cut(s) | 113, 1458 |
| SfaNI | GCATC | 5 cut(s) | 139, 187, 577, 685, 1751 |
| SfcI | CTRYAG | 2 cut(s) | 76, 684 |
| SfoI | GGCGCC | 1 cut(s) | 242 |
| Sfr303I | CCGCGG | 1 cut(s) | 307 |
| SgrBI | CCGCGG | 1 cut(s) | 307 |
| SmlI | CTYRAG | 2 cut(s) | 216, 1508 |
| SmoI | CTYRAG | 2 cut(s) | 216, 1508 |
| SpeI | ACTAGT | 1 cut(s) | 662 |
| SphI | GCATGC | 1 cut(s) | 1032 |
| SsiI | CCGC | 5 cut(s) | 238, 278, 304, 306, 473 |
| SspDI | GGCGCC | 1 cut(s) | 240 |
| SspMI | CTAG | 8 cut(s) | 84, 573, 663, 944, 993, 1235, 1461, 2138 |
| StyD4I | CCNGG | 1 cut(s) | 2007 |
| TaaI | ACNGT | 5 cut(s) | 139, 550, 1097, 2088, 2105 |
| TaiI | ACGT | 2 cut(s) | 2183, 2339 |
| TaqI | TCGA | 6 cut(s) | 382, 567, 785, 1279, 1548, 2401 |
| TaqII | GACCGA | 1 cut(s) | 1208 |
| TatI | WGTACW | 3 cut(s) | 545, 713, 2105 |
| TauI | GCSGC | 3 cut(s) | 241, 306, 475 |
| TfiI | GAWTC | 5 cut(s) | 536, 569, 787, 1772, 2164 |
| Tru1I | TTAA | 7 cut(s) | 149, 375, 810, 822, 894, 1008, 1134 |
| Tru9I | TTAA | 7 cut(s) | 149, 375, 810, 822, 894, 1008, 1134 |
| TscAI | CASTG | 7 cut(s) | 142, 207, 693, 1631, 1752, 2093, 2299 |
| TseFI | GTSAC | 3 cut(s) | 1474, 1858, 2355 |
| TseI | GCWGC | 2 cut(s) | 127, 2004 |
| Tsp45I | GTSAC | 3 cut(s) | 1474, 1858, 2355 |
| TspGWI | ACGGA | 4 cut(s) | 1169, 1197, 1493, 2120 |
| TspRI | CASTG | 7 cut(s) | 142, 207, 693, 1631, 1752, 2093, 2299 |
| VspI | ATTAAT | 1 cut(s) | 1134 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1448, 1523 |
| XapI | RAATTY | 4 cut(s) | 488, 1427, 1842, 2070 |
| XbaI | TCTAGA | 1 cut(s) | 83 |
| XceI | RCATGY | 2 cut(s) | 23, 1032 |
| XspI | CTAG | 8 cut(s) | 84, 573, 663, 944, 993, 1235, 1461, 2138 |
| ZraI | GACGTC | 1 cut(s) | 2337 |
| Zsp2I | ATGCAT | 1 cut(s) | 2331 |