Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0019132

Physical Location & Seq

Genomic Coordinates Forward (+)

5514700 .. 5515842

Gene Structure 1143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1059400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAGAGTCTAATGGGGGAAGAGGGTTTGCCCCCATTGGTTGTTTTGGAGGGGTTGGTTACTAGTTATGGTGAAGGTTGTGGTCGTTCAAGCCCTGCAGTGTTTGATGCACTTGTGAGGGCTTGTACTCGGTTCGGGGCCATAGATGGTGATTATGAGGTGATCAAGAAGCTTAGATTGGATTGGGTTTTGATTCACGCATGGAAGAACTTTCTTAATCATTTAATTAAGTTGAATGAGATTGATAGGTTTTGGAAGATGTATAAGGAAATGCTTTCATATGGGTATGTTGAAGATGTTGATACTTTCAATTTGGTTATTTATGCTCTTTGTAAGGAGTGCAAGTTACTAGAAGCAATGTCGGAATATTATCAGATGTTGAAGAGTGGAATTTGGCCTAGTGTTGTTACTTTTAACATGATTTTAAATGGTCCTGGAGCATGCAGGATGGGTGATATGGAACTTGCCTTGAAGGTTTTGAGAAAGATGGGGGTAATGTCGGAGGACTGTGTTACGGCCAATTCAGTTACTTACAATAATTGTATCATTAATGGGTTTTGCAAAATTAGTGGTTTACCGGTTGCAGAAGAAATTCATGCTGAAATGGCCGAGGCAGGTGTTGAGTCCAATTTGAGGACTTGTGCAACTCTAGTAGATGGGTATGCAAAACAGGGGCGTTTGGAGTTGGCACTTCGATTGTGCGATGGAATGGTGGAAAGGGGATTGGCCCCTAATCCTGTTGTTTACAATTCAATTATCCATCGGCTTCACATGGAAGGAGATACTGAGGAAGCTTTTTCCTTATTGTCTGACTCTGACTTGATTGATAGGCATATATGCTCTGATCAGTTCACCTACTCAATCCTCATCAAGGGGCTCTCTAGAAGTGGGCTTGTGATGGAAGCAGTTGGACTTCATAACCACATCCTTGAGAAGAACCTCATCAAGGATGTTTTCTCCCACAGTATCCTGATTGATTATTTGTGCAAAAGCAAAAATTTGACAGCAGCCAAGCAATTGACGGGCAGCATGTTTGTTCGTGGTTTACTTCCTGACACTGTCACCTATGGCACTTTGATTGATGGGCACTGCAAAGAAGGGAGCATAGGAAGTGCAGTTCAGATTTATGAAAAGCTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

381

Amino Acids

42.28

Weight (kDa)

5.36

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	66 - 112	6.2e-06	PPR repeat family
PPR_2	PF13041	99 - 144	1.1e-08	PPR repeat family
PPR_2	PF13041	174 - 223	7.8e-07	PPR repeat family
PPR_3	PF13812	198 - 254	1.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	244 - 295	8.5e-09	PPR repeat family
PPR_2	PF13041	282 - 330	1.3e-07	PPR repeat family
PPR_2	PF13041	317 - 365	6.7e-11	PPR repeat family
PPR_1	PF12854	347 - 378	8.5e-10	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11710 AT1G11710
malus_domestica	MD02G1262300.v1.1 MD07G1057900.v1.1 MD07G1059400.v1.1
prunus_persica	Prupe.2G064100_v2.0.a1
pyrus_communis	pycom02g22430 pycom07g04410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	605
Acc36I	ACCTGC	1 cut(s)	605
AcoI	YGGCCR	2 cut(s)	516, 606
AcsI	RAATTY	3 cut(s)	390, 591, 997
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	3 cut(s)	633, 871, 946
AgeI	ACCGGT	1 cut(s)	577
AgsI	TTSAA	7 cut(s)	90, 235, 293, 310, 382, 472, 753
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	433
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AloI	GAACNNNNNNTCC	2 cut(s)	1101, 1133
AluBI	AGCT	3 cut(s)	172, 794, 1135
AluI	AGCT	3 cut(s)	172, 794, 1135
AoxI	GGCC	5 cut(s)	138, 395, 516, 606, 726
ApeKI	GCWGC	2 cut(s)	1007, 1026
ApoI	RAATTY	3 cut(s)	390, 591, 997
AseI	ATTAAT	1 cut(s)	549
AsiGI	ACCGGT	1 cut(s)	577
Asp700I	GAANNNNTTC	1 cut(s)	591
AspS9I	GGNCC	3 cut(s)	138, 431, 727
AsuHPI	GGTGA	6 cut(s)	83, 161, 172, 464, 844, 1054
AvaII	GGWCC	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	1089
BanII	GRGCYC	1 cut(s)	879
BbvI	GCAGC	2 cut(s)	1019, 1038
BccI	CCATC	8 cut(s)	140, 442, 481, 650, 698, 768, 892, 1076
BceAI	ACGGC	1 cut(s)	531
BciT130I	CCWGG	1 cut(s)	435
BciVI	GTATCC	1 cut(s)	977
BclI	TGATCA	2 cut(s)	162, 844
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	5 cut(s)	63, 350, 399, 650, 882
BfmI	CTRYAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	605
BfuI	GTATCC	1 cut(s)	977
BisI	GCNGC	2 cut(s)	1008, 1027
BlsI	GCNGC	2 cut(s)	1009, 1028
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	3 cut(s)	138, 431, 727
BmiI	GGNNCC	2 cut(s)	139, 729
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	950
BsaJI	CCNNGG	1 cut(s)	609
BsaWI	WCCGGW	1 cut(s)	577
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	3 cut(s)	633, 871, 946
Bse118I	RCCGGY	1 cut(s)	577
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	609
BseGI	GGATG	3 cut(s)	453, 924, 955
BseLI	CCNNNNNNNGG	3 cut(s)	633, 871, 946
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	777
BseSI	GKGCMC	1 cut(s)	1089
BseXI	GCAGC	2 cut(s)	1019, 1038
BsgI	GTGCAG	1 cut(s)	1134
BshFI	GGCC	5 cut(s)	140, 397, 518, 608, 728
BshTI	ACCGGT	1 cut(s)	577
BsiSI	CCGG	1 cut(s)	578
BslI	CCNNNNNNNGG	3 cut(s)	633, 871, 946
BsnI	GGCC	5 cut(s)	140, 397, 518, 608, 728
Bsp1286I	GDGCHC	2 cut(s)	879, 1089
Bsp143I	GATC	2 cut(s)	162, 844
BspANI	GGCC	5 cut(s)	140, 397, 518, 608, 728
BspCNI	CTCAG	1 cut(s)	778
BspLI	GGNNCC	2 cut(s)	139, 729
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	605
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	577
BssAI	RCCGGY	1 cut(s)	577
BssECI	CCNNGG	1 cut(s)	609
BssMI	GATC	2 cut(s)	162, 844
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	3 cut(s)	509, 965, 1060
Bst6I	CTCTTC	2 cut(s)	15, 377
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	2 cut(s)	173, 786
BstENI	CCTNNNNNAGG	2 cut(s)	869, 944
BstF5I	GGATG	3 cut(s)	453, 924, 955
BstKTI	GATC	2 cut(s)	165, 847
BstMBI	GATC	2 cut(s)	162, 844
BstMWI	GCNNNNNNNGC	1 cut(s)	605
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	2 cut(s)	444, 1033
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	1089
BstV1I	GCAGC	2 cut(s)	1019, 1038
BsuI	GTATCC	1 cut(s)	977
BsuRI	GGCC	5 cut(s)	140, 397, 518, 608, 728
BtgZI	GCGATG	1 cut(s)	717
BtsCI	GGATG	3 cut(s)	453, 924, 955
BtsI	GCAGTG	2 cut(s)	105, 1087
BtsIMutI	CAGTG	3 cut(s)	105, 1056, 1087
BveI	ACCTGC	1 cut(s)	605
Cac8I	GCNNGC	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	577
Cfr13I	GGNCC	3 cut(s)	138, 431, 727
Csp6I	GTAC	1 cut(s)	126
CspAI	ACCGGT	1 cut(s)	577
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviAII	CATG	6 cut(s)	201, 418, 441, 596, 772, 1030
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	2 cut(s)	173, 786
DpnI	GATC	2 cut(s)	164, 846
DpnII	GATC	2 cut(s)	162, 844
DraI	TTTAAA	1 cut(s)	426
EaeI	YGGCCR	2 cut(s)	516, 606
Eam1104I	CTCTTC	2 cut(s)	15, 377
EarI	CTCTTC	2 cut(s)	15, 377
Eco24I	GRGCYC	1 cut(s)	879
Eco47I	GGWCC	1 cut(s)	431
EcoNI	CCTNNNNNAGG	2 cut(s)	869, 944
EcoRII	CCWGG	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	879
FaeI	CATG	6 cut(s)	204, 421, 444, 599, 775, 1033
FatI	CATG	6 cut(s)	200, 417, 440, 595, 771, 1029
FauNDI	CATATG	1 cut(s)	280
FbaI	TGATCA	2 cut(s)	162, 844
Fnu4HI	GCNGC	2 cut(s)	1008, 1027
FokI	GGATG	3 cut(s)	460, 911, 962
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	2 cut(s)	1008, 1027
FspBI	CTAG	5 cut(s)	63, 350, 399, 650, 882
GluI	GCNGC	2 cut(s)	1008, 1027
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	5 cut(s)	140, 397, 518, 608, 728
HapII	CCGG	1 cut(s)	578
Hin1II	CATG	6 cut(s)	204, 421, 444, 599, 775, 1033
HindIII	AAGCTT	2 cut(s)	170, 792
HinfI	GANTC	4 cut(s)	7, 193, 623, 812
HpaII	CCGG	1 cut(s)	578
HphI	GGTGA	6 cut(s)	83, 161, 172, 464, 844, 1054
Hpy166II	GTNNAC	4 cut(s)	575, 745, 852, 1046
Hpy188I	TCNGA	7 cut(s)	364, 375, 502, 811, 817, 844, 1122
Hpy188III	TCNNGA	4 cut(s)	166, 882, 970, 1052
Hpy8I	GTNNAC	4 cut(s)	575, 745, 852, 1046
HpyAV	CCTTC	4 cut(s)	68, 466, 770, 1091
HpyCH4III	ACNGT	3 cut(s)	509, 965, 1060
HpyF10VI	GCNNNNNNNGC	1 cut(s)	605
HpyF3I	CTNAG	2 cut(s)	173, 786
Hsp92II	CATG	6 cut(s)	204, 421, 444, 599, 775, 1033
Ksp22I	TGATCA	2 cut(s)	162, 844
Kzo9I	GATC	2 cut(s)	162, 844
LmnI	GCTCC	2 cut(s)	437, 1101
Lsp1109I	GCAGC	2 cut(s)	1019, 1038
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	5 cut(s)	63, 350, 399, 650, 882
MaeIII	GTNAC	6 cut(s)	58, 345, 406, 511, 526, 1060
MalI	GATC	2 cut(s)	164, 846
MboI	GATC	2 cut(s)	162, 844
MboII	GAAGA	7 cut(s)	32, 217, 268, 305, 394, 599, 946
MfeI	CAATTG	1 cut(s)	1016
MhlI	GDGCHC	2 cut(s)	879, 1089
MlyI	GAGTC	3 cut(s)	16, 632, 806
MmeI	TCCRAC	3 cut(s)	342, 480, 889
MroXI	GAANNNNTTC	1 cut(s)	591
MseI	TTAA	6 cut(s)	216, 224, 228, 414, 425, 549
MspI	CCGG	1 cut(s)	578
MspR9I	CCNGG	1 cut(s)	435
MunI	CAATTG	1 cut(s)	1016
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	605
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	2 cut(s)	162, 844
NlaIII	CATG	6 cut(s)	204, 421, 444, 599, 775, 1033
NlaIV	GGNNCC	2 cut(s)	139, 729
NmeAIII	GCCGAG	1 cut(s)	634
NmuCI	GTSAC	1 cut(s)	1060
NspI	RCATGY	2 cut(s)	444, 1033
PacI	TTAATTAA	1 cut(s)	228
PaeI	GCATGC	1 cut(s)	444
PaqCI	CACCTGC	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	193
PflFI	GACNNNGTC	1 cut(s)	1058
PfoI	TCCNGGA	1 cut(s)	433
PinAI	ACCGGT	1 cut(s)	577
PkrI	GCNGC	2 cut(s)	1009, 1028
PleI	GAGTC	3 cut(s)	15, 631, 806
PpsI	GAGTC	3 cut(s)	15, 631, 806
PshBI	ATTAAT	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	2 cut(s)	139, 729
PspPI	GGNCC	3 cut(s)	138, 431, 727
PstI	CTGCAG	1 cut(s)	100
PsyI	GACNNNGTC	1 cut(s)	1058
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SaqAI	TTAA	6 cut(s)	216, 224, 228, 414, 425, 549
SatI	GCNGC	2 cut(s)	1008, 1027
Sau3AI	GATC	2 cut(s)	162, 844
Sau96I	GGNCC	3 cut(s)	138, 431, 727
SchI	GAGTC	3 cut(s)	16, 632, 806
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	2 cut(s)	879, 1089
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	929
SmoI	CTYRAG	1 cut(s)	929
SpeI	ACTAGT	1 cut(s)	62
SphI	GCATGC	1 cut(s)	444
SspI	AATATT	1 cut(s)	368
SspMI	CTAG	5 cut(s)	63, 350, 399, 650, 882
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	3 cut(s)	509, 965, 1060
TaqI	TCGA	1 cut(s)	694
TatI	WGTACW	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	6 cut(s)	216, 224, 228, 414, 425, 549
Tru9I	TTAA	6 cut(s)	216, 224, 228, 414, 425, 549
TscAI	CASTG	3 cut(s)	105, 1063, 1094
TseFI	GTSAC	1 cut(s)	1060
TseI	GCWGC	2 cut(s)	1007, 1026
Tsp45I	GTSAC	1 cut(s)	1060
TspDTI	ATGAA	4 cut(s)	267, 584, 905, 1143
TspRI	CASTG	3 cut(s)	105, 1063, 1094
Tth111I	GACNNNGTC	1 cut(s)	1058
VpaK11BI	GGWCC	1 cut(s)	431
VspI	ATTAAT	1 cut(s)	549
XagI	CCTNNNNNAGG	2 cut(s)	869, 944
XapI	RAATTY	3 cut(s)	390, 591, 997
XbaI	TCTAGA	1 cut(s)	881
XceI	RCATGY	2 cut(s)	444, 1033
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	5 cut(s)	63, 350, 399, 650, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.