Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008967

Physical Location & Seq

Genomic Coordinates Forward (+)

3957284 .. 3960464

Gene Structure 3181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTCATTCAAGAACAGAGGAGATTACAATTTTACTCCAAGAAATGTAGTTTCTAGAAACTCTGTATTTTTCATGTGCCTCGCAAGTTTCTGCCTTGGAATGTTCTTCACTAACAGGATGTGGAATATAGTACCTGAAGCTAGAGGCATATCAAGACTCTCCAAACTAAGCTTAAGTTCCAGTGATTGCGATAAAAAGAATGTTTTGGACTATGGTAACAACACTATCGGGATCTTAGATAAATCCATTTCAAATTTAGAGATGAAACTAGTAGCTGCTAGAGCTGAACGTGAGTCATTGTCCGGGAAATTTAACATATCCAATGAAGCTAAGAAAAGAAAATACTTCATGGTTATCGGTATTAACACGGCCTTTAGTAGTCGTAAGAGACGTGACTCTGTCCGGTCAACATGGATGCCACAAGGAGAGAATCTTAAGAAACTTGAAGAAGAGAAAGGCATCATTGTTCGCTTTGTTATAGGACATAGTGTGTTGTCCCACGGGATTCTTGATAAAGCTATTGAAGCAGAAGAGAAAACACATGGTGATTTCTTGAGACTGGAACATACGGAGGGATACATGAAGTTATCTGCCAAGACAAAGACGTTTTTCGCTACCGCTGTTTCCTTGTGGGATGCAGAATTCTACATCAAAGTTGACGATGACGTTCATGTGAATCTTGCCTCCCTCAAGAAGGCTTTATCCGCACACCAAAACAAGCCTCGGGTTTATGTTGGTTGCATGAAGTCTGGTCCCGTCCTAGCCAGAAAGAGTGTGAAGTACCATGAGCCAGAGTATTGGAAGTTTGGAGAAGTCGGGAACAAGTATTTCCGCCACGCCACTGGACAGTTTTATGCTATATCTAAAGATCTAGCTACTTACATACTGATAAACCAGGATTTACTGCATAAGTATGCGAATGAAGATGTTTCGTTGGGATCTTGGTTCATCGGATTGAATGTAGAACATGTTGATGAAAAAAGACTTTGTTGCAGTACTTCTCAAGATTGTGAACTAAAAGCAATGATGGGACATGTTTGCGCGGCGTCGTTCGACTGGAAATGCAGCGGAATCTGTCGGTCGGCTGAGAGGATGGCCGACGTTCACGAACGTTGTGGTGAACCTCAAAATGCATTATGGACGTCAAATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

384

Amino Acids

43.62

Weight (kDa)

9.03

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	18 - 96	2.5e-19	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	129 - 325	5.3e-48	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11730
fragaria_vesca	FvH4_3g02020 FvH4_3g02020 FvH4_3g02020 FvH4_3g02020
malus_domestica	MD05G1347600.v1.1 MD10G1322000.v1.1
prunus_persica	Prupe.4G020000_v2.0.a1 Prupe.4G020000_v2.0.a1 Prupe.4G020000_v2.0.a1
pyrus_communis	pycom05g31520 pycom10g27250
rosa_chinensis	RchiOBHm_Chr5g0002921
rosa_laevigata	RLG00000031070
rosa_multiflora	Rmu_sc0013603.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072930
rosa_rugosa	Rorug04G0400600
rosa_samantha	Rh5AG023500 Rh5BG026200 Rh5CG026200 Rh5DG024900
rosa_wichuraiana	Rw5G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1145
AccII	CGCG	1 cut(s)	1043
AciI	CCGC	5 cut(s)	618, 705, 832, 1043, 1068
AclI	AACGTT	1 cut(s)	1111
AclWI	GGATC	2 cut(s)	239, 946
AcoI	YGGCCR	1 cut(s)	1095
AcsI	RAATTY	4 cut(s)	253, 308, 641, 1147
AcuI	CTGAAG	1 cut(s)	156
AcyI	GRCGYC	2 cut(s)	1046, 1142
AdeI	CACNNNGTG	1 cut(s)	545
AfaI	GTAC	3 cut(s)	132, 782, 997
AfiI	CCNNNNNNNGG	1 cut(s)	694
AflII	CTTAAG	2 cut(s)	172, 434
AflIII	ACRYGT	2 cut(s)	967, 1033
AgsI	TTSAA	5 cut(s)	10, 252, 446, 524, 958
AhlI	ACTAGT	1 cut(s)	268
AjiI	CACGTC	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	894
AluBI	AGCT	7 cut(s)	140, 171, 275, 284, 329, 518, 875
AluI	AGCT	7 cut(s)	140, 171, 275, 284, 329, 518, 875
Alw26I	GTCTC	2 cut(s)	382, 550
AlwI	GGATC	2 cut(s)	239, 946
Ama87I	CYCGRG	1 cut(s)	723
AoxI	GGCC	2 cut(s)	369, 1095
ApeKI	GCWGC	2 cut(s)	275, 1065
ApoI	RAATTY	4 cut(s)	253, 308, 641, 1147
AspLEI	GCGC	1 cut(s)	1043
AspS9I	GGNCC	1 cut(s)	752
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	2 cut(s)	557, 1130
AvaI	CYCGRG	1 cut(s)	723
AvaII	GGWCC	1 cut(s)	752
BbvI	GCAGC	2 cut(s)	262, 1077
BccI	CCATC	2 cut(s)	1021, 1087
BceAI	ACGGC	1 cut(s)	384
BciT130I	CCWGG	1 cut(s)	896
BciVI	GTATCC	1 cut(s)	569
BcnI	CCSGG	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	382, 550
BcuI	ACTAGT	1 cut(s)	268
BfaI	CTAG	6 cut(s)	54, 141, 269, 279, 761, 872
BfrI	CTTAAG	2 cut(s)	172, 434
BfuI	GTATCC	1 cut(s)	569
BglII	AGATCT	1 cut(s)	868
BisI	GCNGC	3 cut(s)	276, 1044, 1066
BlsI	GCNGC	3 cut(s)	277, 1045, 1067
BmcAI	AGTACT	1 cut(s)	997
Bme1390I	CCNGG	2 cut(s)	304, 896
Bme18I	GGWCC	1 cut(s)	752
BmeT110I	CYCGRG	1 cut(s)	723
BmgBI	CACGTC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	752
BmiI	GGNNCC	1 cut(s)	754
BmrFI	CCNGG	2 cut(s)	304, 896
BmsI	GCATC	3 cut(s)	405, 468, 625
BpuEI	CTTGAG	3 cut(s)	574, 674, 987
BpuMI	CCSGG	1 cut(s)	304
BsaHI	GRCGYC	2 cut(s)	1046, 1142
BsaJI	CCNNGG	3 cut(s)	94, 499, 722
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	694
Bse1I	ACTGG	4 cut(s)	180, 564, 847, 1061
Bse3DI	GCAATG	1 cut(s)	1029
BseBI	CCWGG	1 cut(s)	896
BseDI	CCNNGG	3 cut(s)	94, 499, 722
BseGI	GGATG	4 cut(s)	123, 420, 640, 1098
BseLI	CCNNNNNNNGG	1 cut(s)	694
BseMI	GCAATG	1 cut(s)	1029
BseMII	CTCAG	1 cut(s)	1077
BseNI	ACTGG	4 cut(s)	180, 564, 847, 1061
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	262, 1077
Bsh1236I	CGCG	1 cut(s)	1043
Bsh1285I	CGRYCG	1 cut(s)	1082
BshFI	GGCC	2 cut(s)	371, 1097
BsiEI	CGRYCG	1 cut(s)	1082
BsiHKCI	CYCGRG	1 cut(s)	723
BsiSI	CCGG	2 cut(s)	303, 403
BslFI	GGGAC	3 cut(s)	481, 738, 1044
BslI	CCNNNNNNNGG	1 cut(s)	694
BsmAI	GTCTC	2 cut(s)	382, 550
BsmBI	CGTCTC	1 cut(s)	382
BsmFI	GGGAC	3 cut(s)	481, 738, 1044
BsnI	GGCC	2 cut(s)	371, 1097
BsoBI	CYCGRG	1 cut(s)	723
Bsp143I	GATC	3 cut(s)	231, 868, 938
BspACI	CCGC	5 cut(s)	618, 705, 832, 1043, 1068
BspANI	GGCC	2 cut(s)	371, 1097
BspCNI	CTCAG	1 cut(s)	1078
BspFNI	CGCG	1 cut(s)	1043
BspLI	GGNNCC	1 cut(s)	754
BspPI	GGATC	2 cut(s)	239, 946
BspTI	CTTAAG	2 cut(s)	172, 434
BsrDI	GCAATG	1 cut(s)	1029
BsrI	ACTGG	4 cut(s)	180, 564, 847, 1061
BssECI	CCNNGG	3 cut(s)	94, 499, 722
BssMI	GATC	3 cut(s)	231, 868, 938
BssNI	GRCGYC	2 cut(s)	1046, 1142
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	896
Bst4CI	ACNGT	1 cut(s)	849
Bst6I	CTCTTC	2 cut(s)	444, 525
BstACI	GRCGYC	2 cut(s)	1046, 1142
BstAFI	CTTAAG	2 cut(s)	172, 434
BstDEI	CTNAG	4 cut(s)	167, 235, 330, 1086
BstDSI	CCRYGG	1 cut(s)	499
BstENI	CCTNNNNNAGG	1 cut(s)	692
BstF5I	GGATG	4 cut(s)	123, 420, 640, 1098
BstFNI	CGCG	1 cut(s)	1043
BstHHI	GCGC	1 cut(s)	1043
BstKTI	GATC	3 cut(s)	234, 871, 941
BstMAI	GTCTC	2 cut(s)	382, 550
BstMBI	GATC	3 cut(s)	231, 868, 938
BstMCI	CGRYCG	1 cut(s)	1082
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 524, 704
BstNI	CCWGG	1 cut(s)	896
BstNSI	RCATGY	2 cut(s)	971, 1037
BstSCI	CCNGG	2 cut(s)	302, 894
BstUI	CGCG	1 cut(s)	1043
BstV1I	GCAGC	2 cut(s)	262, 1077
BstX2I	RGATCY	3 cut(s)	231, 868, 938
BstXI	CCANNNNNNTGG	2 cut(s)	798, 842
BstYI	RGATCY	3 cut(s)	231, 868, 938
BsuI	GTATCC	1 cut(s)	569
BsuRI	GGCC	2 cut(s)	371, 1097
BtgI	CCRYGG	1 cut(s)	499
BtrI	CACGTC	1 cut(s)	392
BtsCI	GGATG	4 cut(s)	123, 420, 640, 1098
BtsIMutI	CAGTG	2 cut(s)	187, 840
CfoI	GCGC	1 cut(s)	1043
Cfr13I	GGNCC	1 cut(s)	752
CseI	GACGC	1 cut(s)	1035
Csp6I	GTAC	3 cut(s)	131, 781, 996
CviQI	GTAC	3 cut(s)	131, 781, 996
DdeI	CTNAG	4 cut(s)	167, 235, 330, 1086
DpnI	GATC	3 cut(s)	233, 870, 940
DpnII	GATC	3 cut(s)	231, 868, 938
DraIII	CACNNNGTG	1 cut(s)	545
EaeI	YGGCCR	1 cut(s)	1095
Eam1104I	CTCTTC	2 cut(s)	444, 525
EarI	CTCTTC	2 cut(s)	444, 525
EciI	GGCGGA	1 cut(s)	821
Eco130I	CCWWGG	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	752
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	723
EcoNI	CCTNNNNNAGG	1 cut(s)	692
EcoRI	GAATTC	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	894
EcoT14I	CCWWGG	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	1135
ErhI	CCWWGG	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	382
FaqI	GGGAC	3 cut(s)	481, 738, 1044
Fnu4HI	GCNGC	3 cut(s)	276, 1044, 1066
FokI	GGATG	4 cut(s)	130, 427, 647, 1105
Fsp4HI	GCNGC	3 cut(s)	276, 1044, 1066
FspBI	CTAG	6 cut(s)	54, 141, 269, 279, 761, 872
GlaI	GCGC	1 cut(s)	1042
GluI	GCNGC	3 cut(s)	276, 1044, 1066
HaeIII	GGCC	2 cut(s)	371, 1097
HapII	CCGG	2 cut(s)	303, 403
HgaI	GACGC	1 cut(s)	1035
HhaI	GCGC	1 cut(s)	1043
Hin1I	GRCGYC	2 cut(s)	1046, 1142
Hin6I	GCGC	1 cut(s)	1041
HinP1I	GCGC	1 cut(s)	1041
HincII	GTYRAC	2 cut(s)	408, 658
HindII	GTYRAC	2 cut(s)	408, 658
HindIII	AAGCTT	1 cut(s)	169
HinfI	GANTC	7 cut(s)	156, 293, 395, 430, 505, 676, 1071
HpaII	CCGG	2 cut(s)	303, 403
HphI	GGTGA	2 cut(s)	557, 1130
Hpy166II	GTNNAC	5 cut(s)	408, 658, 1013, 1105, 1121
Hpy188I	TCNGA	1 cut(s)	953
Hpy8I	GTNNAC	5 cut(s)	408, 658, 1013, 1105, 1121
Hpy99I	CGWCG	2 cut(s)	1051, 1103
HpyAV	CCTTC	1 cut(s)	688
HpyCH4III	ACNGT	1 cut(s)	849
HpyCH4IV	ACGT	7 cut(s)	289, 391, 605, 666, 1101, 1111, 1142
HpyCH4V	TGCA	6 cut(s)	638, 741, 907, 993, 1065, 1133
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 524, 704
HpyF3I	CTNAG	4 cut(s)	167, 235, 330, 1086
HpySE526I	ACGT	7 cut(s)	289, 391, 605, 666, 1101, 1111, 1142
Hsp92I	GRCGYC	2 cut(s)	1046, 1142
HspAI	GCGC	1 cut(s)	1041
Kzo9I	GATC	3 cut(s)	231, 868, 938
Lsp1109I	GCAGC	2 cut(s)	262, 1077
LweI	GCATC	3 cut(s)	405, 468, 625
MaeI	CTAG	6 cut(s)	54, 141, 269, 279, 761, 872
MaeII	ACGT	7 cut(s)	289, 391, 605, 666, 1101, 1111, 1142
MaeIII	GTNAC	2 cut(s)	215, 392
MalI	GATC	3 cut(s)	233, 870, 940
MboI	GATC	3 cut(s)	231, 868, 938
MboII	GAAGA	5 cut(s)	97, 458, 461, 542, 935
MflI	RGATCY	3 cut(s)	231, 868, 938
MluCI	AATT	5 cut(s)	28, 253, 308, 641, 1147
MlyI	GAGTC	3 cut(s)	150, 302, 389
MnlI	CCTC	9 cut(s)	11, 89, 137, 565, 694, 698, 732, 1083, 1134
Mph1103I	ATGCAT	1 cut(s)	1135
MseI	TTAA	4 cut(s)	173, 312, 363, 435
MslI	CAYNNNNRTG	2 cut(s)	912, 972
MspA1I	CMGCKG	2 cut(s)	620, 1068
MspCI	CTTAAG	2 cut(s)	172, 434
MspI	CCGG	2 cut(s)	303, 403
MspR9I	CCNGG	2 cut(s)	304, 896
MvaI	CCWGG	1 cut(s)	896
MvnI	CGCG	1 cut(s)	1043
MwoI	GCNNNNNNNGC	3 cut(s)	281, 524, 704
NciI	CCSGG	1 cut(s)	304
NdeII	GATC	3 cut(s)	231, 868, 938
NlaIV	GGNNCC	1 cut(s)	754
NmuCI	GTSAC	1 cut(s)	392
NsiI	ATGCAT	1 cut(s)	1135
NspI	RCATGY	2 cut(s)	971, 1037
PciI	ACATGT	2 cut(s)	967, 1033
PcsI	WCGNNNNNNNCGW	1 cut(s)	388
PfeI	GAWTC	4 cut(s)	430, 505, 676, 1071
PflFI	GACNNNGTC	1 cut(s)	398
PfoI	TCCNGGA	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	277, 1045, 1067
PleI	GAGTC	3 cut(s)	150, 301, 389
PpsI	GAGTC	3 cut(s)	150, 301, 389
PscI	ACATGT	2 cut(s)	967, 1033
Psp1406I	AACGTT	1 cut(s)	1111
Psp6I	CCWGG	1 cut(s)	894
PspGI	CCWGG	1 cut(s)	894
PspN4I	GGNNCC	1 cut(s)	754
PspPI	GGNCC	1 cut(s)	752
PsuI	RGATCY	3 cut(s)	231, 868, 938
PsyI	GACNNNGTC	1 cut(s)	398
RsaI	GTAC	3 cut(s)	132, 782, 997
RsaNI	GTAC	3 cut(s)	131, 781, 996
RseI	CAYNNNNRTG	2 cut(s)	912, 972
SaqAI	TTAA	4 cut(s)	173, 312, 363, 435
SatI	GCNGC	3 cut(s)	276, 1044, 1066
Sau3AI	GATC	3 cut(s)	231, 868, 938
Sau96I	GGNCC	1 cut(s)	752
ScaI	AGTACT	1 cut(s)	997
SchI	GAGTC	3 cut(s)	150, 302, 389
ScrFI	CCNGG	2 cut(s)	304, 896
SfaNI	GCATC	3 cut(s)	405, 468, 625
SinI	GGWCC	1 cut(s)	752
SmiMI	CAYNNNNRTG	2 cut(s)	912, 972
SmlI	CTYRAG	5 cut(s)	172, 434, 553, 689, 1002
SmoI	CTYRAG	5 cut(s)	172, 434, 553, 689, 1002
SpeI	ACTAGT	1 cut(s)	268
Sse9I	AATT	5 cut(s)	28, 253, 308, 641, 1147
SsiI	CCGC	5 cut(s)	618, 705, 832, 1043, 1068
SspMI	CTAG	6 cut(s)	54, 141, 269, 279, 761, 872
StyD4I	CCNGG	2 cut(s)	302, 894
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	849
TaiI	ACGT	7 cut(s)	292, 394, 608, 669, 1104, 1114, 1145
TaqI	TCGA	1 cut(s)	1053
TaqII	GACCGA	1 cut(s)	1068
TasI	AATT	5 cut(s)	28, 253, 308, 641, 1147
TatI	WGTACW	1 cut(s)	995
TauI	GCSGC	1 cut(s)	1046
TfiI	GAWTC	4 cut(s)	430, 505, 676, 1071
Tru1I	TTAA	4 cut(s)	173, 312, 363, 435
Tru9I	TTAA	4 cut(s)	173, 312, 363, 435
TscAI	CASTG	2 cut(s)	187, 847
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	2 cut(s)	275, 1065
Tsp45I	GTSAC	1 cut(s)	392
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	2 cut(s)	187, 847
Tth111I	GACNNNGTC	1 cut(s)	398
Vha464I	CTTAAG	2 cut(s)	172, 434
VpaK11BI	GGWCC	1 cut(s)	752
XagI	CCTNNNNNAGG	1 cut(s)	692
XapI	RAATTY	4 cut(s)	253, 308, 641, 1147
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	2 cut(s)	971, 1037
XspI	CTAG	6 cut(s)	54, 141, 269, 279, 761, 872
ZraI	GACGTC	1 cut(s)	1143
ZrmI	AGTACT	1 cut(s)	997
Zsp2I	ATGCAT	1 cut(s)	1135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.