Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008967

Physical Location & Seq

Genomic Coordinates Reverse (-)

1861049 .. 1864258

Gene Structure 3210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTCTATAAAGAGCAGAGGATGGGGAGGAGAGATAACAATAAGGAATGTGATTTCAAGGAACTTGGCTCTTCTGCTATGCTTGTGCAGCTTCTTTGCTGGGATATTATTCACCAACAGGTTGTGGATGGTTCCTGAATCGTGGCCATCTAGAATTGCAGTTGAAAGGATAAATTTTGAACCTGAGGATTGTAATCAGAAGATTATAGCAGCTGCTACGGCAATTCAAGAGTCATCTTTACATCATGACTCTCCTGTGTTAGGAAACTCAGAGACTGTTCAGTCAGCTTTAAAAAAGAAGTACTTTATGGTTATAGGGATCAATACAGCTTTTAATAGCCGGAAAAGAAGAGATTCAGTACGTGCAACTTGGATGCCACAAGGTGAGGAAAGAAAGAAGCTAGAAGAAGAGAAGGGCATACTCATACGCTTTGTTATGGGCCACAGTGCGACAGCTGGTGGTATTCTTGATAAAGCTATTGAAGCAGAGGAGCTCATTCATGGAGACTTCTTGAGGCTGAACCATGTTGAGGGCTACCTGGAATTATCAGCCAAGACAAAGACCTACTTTTCCACAGCTGTTTCTTTGTGGGATGCTGAATTCTATATCAAAGTTGATGATGATGTCCATGTAAATCTAGCTACACTTGGGACAATTCTGTCAAGACACCGTGTGAAACGGCGAGTGTATATTGGTTGCATGAAGTCAGGTCCAGTCCTTGCTCGAAAGGGCGTTAAATACCATGAACCGGAGTTCTGGAAATTCGGGGAGGTGGGAAACAAGTATTTTCGTCATGCTACAGGACAATTATATGCTATTTCAAAGGATTTGGCAACTTACATATCAGTAAACCAGGATGTGCTGCACAAATATGCCAATGAAGATGTTTCCTTGGGATCTTGGTTCATTGGCCTAGACGTGGACCACGTGGATGATAGGAGACTTTGTTGTGGTACTCCACCTGATTGTGTGTGGAAGGGAATGTCTGGCAACACCTGTGCTGCTTCATTTGATTGGCGTTGCAGTGGCATTTGCAGGTCCGTTGAGAGAATGATGGATGTTCACCAGCGTTGTGGTGAAGACAAGAATGCTCTTTGGAATGCAAGGTTTTTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

372

Amino Acids

42.19

Weight (kDa)

8.41

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	19 - 70	1.3e-09	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	115 - 312	1.4e-47	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11730
fragaria_vesca	FvH4_3g02020 FvH4_3g02020 FvH4_3g02020 FvH4_3g02020
malus_domestica	MD05G1347600.v1.1 MD10G1322000.v1.1
prunus_persica	Prupe.4G020000_v2.0.a1 Prupe.4G020000_v2.0.a1 Prupe.4G020000_v2.0.a1
pyrus_communis	pycom05g31520 pycom10g27250
rosa_chinensis	RchiOBHm_Chr5g0002921
rosa_laevigata	RLG00000031070
rosa_multiflora	Rmu_sc0013603.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072930
rosa_rugosa	Rorug04G0400600
rosa_samantha	Rh5AG023500 Rh5BG026200 Rh5CG026200 Rh5DG024900
rosa_wichuraiana	Rw5G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	280, 658
Acc36I	ACCTGC	1 cut(s)	1026
AclWI	GGATC	2 cut(s)	326, 904
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	3 cut(s)	172, 599, 761
AcvI	CACGTG	1 cut(s)	928
AdeI	CACNNNGTG	2 cut(s)	383, 673
AfaI	GTAC	3 cut(s)	302, 360, 955
AfiI	CCNNNNNNNGG	4 cut(s)	260, 529, 748, 919
AgsI	TTSAA	6 cut(s)	57, 164, 179, 227, 482, 822
AjiI	CACGTC	1 cut(s)	919
AjnI	CCWGG	2 cut(s)	537, 852
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	3 cut(s)	266, 498, 934
AlwI	GGATC	2 cut(s)	326, 904
AlwNI	CAGNNNCTG	1 cut(s)	275
AoxI	GGCC	3 cut(s)	143, 439, 910
ApeKI	GCWGC	5 cut(s)	87, 209, 212, 862, 1001
ApoI	RAATTY	3 cut(s)	172, 599, 761
Asp700I	GAANNNNTTC	1 cut(s)	352
AspS9I	GGNCC	4 cut(s)	439, 710, 922, 1038
AsuHPI	GGTGA	4 cut(s)	103, 395, 1055, 1088
AvaII	GGWCC	3 cut(s)	710, 922, 1038
AxyI	CCTNAGG	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	495
BbrPI	CACGTG	1 cut(s)	928
BbsI	GAAGAC	1 cut(s)	1086
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	5 cut(s)	99, 199, 221, 849, 988
BccI	CCATC	4 cut(s)	15, 121, 154, 1048
BceAI	ACGGC	2 cut(s)	234, 695
BciT130I	CCWGG	2 cut(s)	539, 854
BcoDI	GTCTC	3 cut(s)	266, 498, 934
BfaI	CTAG	4 cut(s)	150, 401, 638, 914
BfmI	CTRYAG	1 cut(s)	798
BfuAI	ACCTGC	1 cut(s)	1026
BisI	GCNGC	5 cut(s)	88, 210, 213, 863, 1002
BlsI	GCNGC	5 cut(s)	89, 211, 214, 864, 1003
BmcAI	AGTACT	1 cut(s)	302
Bme1390I	CCNGG	2 cut(s)	539, 854
Bme18I	GGWCC	3 cut(s)	710, 922, 1038
BmgBI	CACGTC	1 cut(s)	919
BmgT120I	GGNCC	4 cut(s)	439, 710, 922, 1038
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	539, 854
BmsI	GCATC	2 cut(s)	363, 583
BpiI	GAAGAC	1 cut(s)	1086
BpuEI	CTTGAG	1 cut(s)	532
BsaAI	YACGTR	2 cut(s)	362, 928
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	891
BsaWI	WCCGGW	1 cut(s)	748
BsaXI	ACNNNNNCTCC	2 cut(s)	931, 961
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 529, 748, 919
Bse1I	ACTGG	1 cut(s)	713
Bse21I	CCTNAGG	1 cut(s)	183
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	539, 854
BseDI	CCNNGG	1 cut(s)	891
BseGI	GGATG	7 cut(s)	26, 132, 378, 598, 862, 937, 1063
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	4 cut(s)	260, 529, 748, 919
BseMII	CTCAG	2 cut(s)	174, 282
BseNI	ACTGG	1 cut(s)	713
BseRI	GAGGAG	2 cut(s)	42, 503
BseXI	GCAGC	5 cut(s)	99, 199, 221, 849, 988
BseYI	CCCAGC	1 cut(s)	98
BsgI	GTGCAG	2 cut(s)	106, 848
BshFI	GGCC	3 cut(s)	145, 441, 912
BsiHKAI	GWGCWC	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	340, 749
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	4 cut(s)	260, 529, 748, 919
BsmAI	GTCTC	3 cut(s)	266, 498, 934
BsmFI	GGGAC	1 cut(s)	664
BsmI	GAATGC	2 cut(s)	1093, 1105
BsnI	GGCC	3 cut(s)	145, 441, 912
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	2 cut(s)	318, 896
BspANI	GGCC	3 cut(s)	145, 441, 912
BspCNI	CTCAG	2 cut(s)	175, 281
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	1026
BspPI	GGATC	2 cut(s)	326, 904
BspQI	GCTCTTC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	713
BssECI	CCNNGG	1 cut(s)	891
BssMI	GATC	2 cut(s)	318, 896
BssT1I	CCWWGG	1 cut(s)	891
Bst2UI	CCWGG	2 cut(s)	539, 854
Bst4CI	ACNGT	3 cut(s)	277, 446, 671
Bst6I	CTCTTC	3 cut(s)	75, 343, 402
BstBAI	YACGTR	2 cut(s)	362, 928
BstDEI	CTNAG	2 cut(s)	183, 268
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	7 cut(s)	26, 132, 378, 598, 862, 937, 1063
BstKTI	GATC	2 cut(s)	321, 899
BstMAI	GTCTC	3 cut(s)	266, 498, 934
BstMBI	GATC	2 cut(s)	318, 896
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 218, 482
BstNI	CCWGG	2 cut(s)	539, 854
BstSCI	CCNGG	2 cut(s)	537, 852
BstSFI	CTRYAG	1 cut(s)	798
BstV1I	GCAGC	5 cut(s)	99, 199, 221, 849, 988
BstV2I	GAAGAC	1 cut(s)	1086
BstX2I	RGATCY	1 cut(s)	896
BstXI	CCANNNNNNTGG	1 cut(s)	1073
BstYI	RGATCY	1 cut(s)	896
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	145, 441, 912
BtrI	CACGTC	1 cut(s)	919
BtsCI	GGATG	7 cut(s)	26, 132, 378, 598, 862, 937, 1063
BtsI	GCAGTG	1 cut(s)	1030
BtsIMutI	CAGTG	2 cut(s)	451, 1030
BveI	ACCTGC	1 cut(s)	1026
CaiI	CAGNNNCTG	1 cut(s)	275
CciI	TCATGA	1 cut(s)	244
Cfr13I	GGNCC	4 cut(s)	439, 710, 922, 1038
Csp6I	GTAC	3 cut(s)	301, 359, 954
CviAII	CATG	7 cut(s)	245, 500, 524, 629, 700, 743, 794
CviQI	GTAC	3 cut(s)	301, 359, 954
DdeI	CTNAG	2 cut(s)	183, 268
DpnI	GATC	2 cut(s)	320, 898
DpnII	GATC	2 cut(s)	318, 896
DraI	TTTAAA	1 cut(s)	291
DraIII	CACNNNGTG	2 cut(s)	383, 673
DrdI	GACNNNNNNGTC	2 cut(s)	280, 658
DseDI	GACNNNNNNGTC	2 cut(s)	280, 658
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	3 cut(s)	75, 343, 402
EarI	CTCTTC	3 cut(s)	75, 343, 402
Ecl136II	GAGCTC	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	891
Eco24I	GRGCYC	1 cut(s)	495
Eco47I	GGWCC	3 cut(s)	710, 922, 1038
Eco53kI	GAGCTC	1 cut(s)	493
Eco72I	CACGTG	1 cut(s)	928
Eco81I	CCTNAGG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	493
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	537, 852
EcoT14I	CCWWGG	1 cut(s)	891
EcoT38I	GRGCYC	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	891
FaeI	CATG	7 cut(s)	248, 503, 527, 632, 703, 746, 797
FalI	AAGNNNNNCTT	4 cut(s)	287, 319, 551, 583
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	7 cut(s)	244, 499, 523, 628, 699, 742, 793
Fnu4HI	GCNGC	5 cut(s)	88, 210, 213, 863, 1002
FokI	GGATG	7 cut(s)	33, 139, 385, 605, 869, 944, 1070
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	5 cut(s)	88, 210, 213, 863, 1002
FspBI	CTAG	4 cut(s)	150, 401, 638, 914
GluI	GCNGC	5 cut(s)	88, 210, 213, 863, 1002
GsaI	CCCAGC	1 cut(s)	102
HaeIII	GGCC	3 cut(s)	145, 441, 912
HapII	CCGG	2 cut(s)	340, 749
Hin1II	CATG	7 cut(s)	248, 503, 527, 632, 703, 746, 797
HinfI	GANTC	4 cut(s)	137, 230, 248, 353
HpaII	CCGG	2 cut(s)	340, 749
HphI	GGTGA	4 cut(s)	103, 395, 1055, 1088
Hpy166II	GTNNAC	3 cut(s)	850, 922, 1063
Hpy188I	TCNGA	2 cut(s)	198, 271
Hpy188III	TCNNGA	8 cut(s)	134, 150, 227, 245, 467, 511, 663, 757
Hpy8I	GTNNAC	3 cut(s)	850, 922, 1063
HpyAV	CCTTC	2 cut(s)	406, 970
HpyCH4III	ACNGT	3 cut(s)	277, 446, 671
HpyCH4IV	ACGT	3 cut(s)	361, 918, 927
HpyCH4V	TGCA	8 cut(s)	87, 158, 365, 699, 865, 1023, 1035, 1103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 218, 482
HpyF3I	CTNAG	2 cut(s)	183, 268
HpySE526I	ACGT	3 cut(s)	361, 918, 927
Hsp92II	CATG	7 cut(s)	248, 503, 527, 632, 703, 746, 797
Kzo9I	GATC	2 cut(s)	318, 896
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	5 cut(s)	99, 199, 221, 849, 988
LweI	GCATC	2 cut(s)	363, 583
MaeI	CTAG	4 cut(s)	150, 401, 638, 914
MaeII	ACGT	3 cut(s)	361, 918, 927
MalI	GATC	2 cut(s)	320, 898
MboI	GATC	2 cut(s)	318, 896
MboII	GAAGA	7 cut(s)	62, 211, 360, 416, 419, 893, 1091
MflI	RGATCY	1 cut(s)	896
MhlI	GDGCHC	1 cut(s)	495
MlsI	TGGCCA	1 cut(s)	145
MluCI	AATT	8 cut(s)	153, 172, 222, 542, 599, 654, 761, 806
MluNI	TGGCCA	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	239, 242
MnlI	CCTC	8 cut(s)	11, 20, 178, 379, 481, 507, 523, 763
Mox20I	TGGCCA	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	145
MseI	TTAA	3 cut(s)	290, 333, 735
MslI	CAYNNNNRTG	2 cut(s)	870, 930
Msp20I	TGGCCA	1 cut(s)	145
MspA1I	CMGCKG	3 cut(s)	212, 455, 578
MspI	CCGG	2 cut(s)	340, 749
MspR9I	CCNGG	2 cut(s)	539, 854
Mva1269I	GAATGC	2 cut(s)	1093, 1105
MvaI	CCWGG	2 cut(s)	539, 854
MwoI	GCNNNNNNNGC	3 cut(s)	87, 218, 482
NdeII	GATC	2 cut(s)	318, 896
NlaIII	CATG	7 cut(s)	248, 503, 527, 632, 703, 746, 797
NlaIV	GGNNCC	1 cut(s)	132
PagI	TCATGA	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	924
PctI	GAATGC	2 cut(s)	1093, 1105
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	137, 353
PkrI	GCNGC	5 cut(s)	89, 211, 214, 864, 1003
PleI	GAGTC	2 cut(s)	238, 242
PmaCI	CACGTG	1 cut(s)	928
PmlI	CACGTG	1 cut(s)	928
PpsI	GAGTC	2 cut(s)	238, 242
Ppu21I	YACGTR	2 cut(s)	362, 928
Psp124BI	GAGCTC	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	537, 852
PspCI	CACGTG	1 cut(s)	928
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	2 cut(s)	537, 852
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	4 cut(s)	439, 710, 922, 1038
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	896
PvuII	CAGCTG	3 cut(s)	212, 455, 578
RsaI	GTAC	3 cut(s)	302, 360, 955
RsaNI	GTAC	3 cut(s)	301, 359, 954
RseI	CAYNNNNRTG	2 cut(s)	870, 930
SacI	GAGCTC	1 cut(s)	495
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	290, 333, 735
SatI	GCNGC	5 cut(s)	88, 210, 213, 863, 1002
Sau3AI	GATC	2 cut(s)	318, 896
Sau96I	GGNCC	4 cut(s)	439, 710, 922, 1038
ScaI	AGTACT	1 cut(s)	302
SchI	GAGTC	2 cut(s)	239, 242
ScrFI	CCNGG	2 cut(s)	539, 854
SduI	GDGCHC	1 cut(s)	495
SfaNI	GCATC	2 cut(s)	363, 583
SfcI	CTRYAG	1 cut(s)	798
SinI	GGWCC	3 cut(s)	710, 922, 1038
SmiMI	CAYNNNNRTG	2 cut(s)	870, 930
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	8 cut(s)	153, 172, 222, 542, 599, 654, 761, 806
SspMI	CTAG	4 cut(s)	150, 401, 638, 914
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	537, 852
StyI	CCWWGG	1 cut(s)	891
TaaI	ACNGT	3 cut(s)	277, 446, 671
TaiI	ACGT	3 cut(s)	364, 921, 930
TaqI	TCGA	1 cut(s)	724
TasI	AATT	8 cut(s)	153, 172, 222, 542, 599, 654, 761, 806
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	2 cut(s)	137, 353
Tru1I	TTAA	3 cut(s)	290, 333, 735
Tru9I	TTAA	3 cut(s)	290, 333, 735
TscAI	CASTG	2 cut(s)	451, 1030
TseI	GCWGC	5 cut(s)	87, 209, 212, 862, 1001
TspDTI	ATGAA	6 cut(s)	488, 716, 759, 894, 895, 996
TspGWI	ACGGA	1 cut(s)	1030
TspRI	CASTG	2 cut(s)	451, 1030
VpaK11BI	GGWCC	3 cut(s)	710, 922, 1038
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	3 cut(s)	172, 599, 761
XbaI	TCTAGA	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	4 cut(s)	150, 401, 638, 914
ZrmI	AGTACT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.