FvH4_3g02020

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008967
Physical Location & Seq
Reverse (-)
1013753 .. 1017178
3426 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02020.t2

Sequence Viewer

Length: 1119 bp
ATGTCTATAAAGAGCAGAGGATGGGGAGGAGAGATAACAACAAAGAATGTGATTTCAAGGAACTTGGCTGTTCTGCTATGCTTGTGCAGCTTCTTTGCTGGGATATTATTCACCAACAGGTTGTGGGTGGTTCCTGAACCATGGCCAACTAGAACTTCAATTCATAGGATAAATTCCAAACCTGAGGATTGTAATCAGAAGATTATAGCAGCTGATAGGGCAACTCAAAAATCATCTGGACATCATGACTCTCCTGTGTTAGGAAACTCGAAAACTGTTGAATTAGCTTCCGAAAAGAAGTACTTCATGGTTATAGGAATCAATACAGCTTTTAATAGTCGGAAAAGAAGAGATTCAGTACGTGCAACTTGGATGCCACAAGGTGAAGAAAGAAAGAAGCTAGAAGAAGAGAAGGGCATTCTCTTACGCTTTGTTATAGGACACAGTGCGACAGCTGGTGGTATTCTTGATAAAGCTATTGAAGCAGAGGAGCTCGTCTATGGAGACTTTTTGAGGCTGAACCATGTTGAGGGCTACCTGGAATTATCAGCCAAGACAAAGACCTACTTTTCCACAGCTGTTGCTTTGTGGGATGCTGAATTCTATATCAAAGTTGATGATGATGTCCATGTAAATCTAGCTACACTTGGGACAATCCTGTCTAGACACCGTGCGAAACCGCGAGTATACATTGGTTGCATGAAGTCAGGTCCAGTCCTCTCTCGAAAGGGCGTGAAATACCATGAACCAGAGTTCTGGAAATTTGGGGAGGTGGGAAACAAGTATTTTCGTCATGCTACAGGACAACTGTATGCTATCTCGAAGGATTTGGCAACTTACATATCAGCAAACCAGGATGTGCTGCACAAATATGCCAATGAAGATGTTTCATTGGGATCTTGGTTCATTGGCTTAGAAGTGGACCAAGTGGATGATAGGAGACTTTGCTGTGGTACTCCACCTGACTGTGTGTGGAAGGGTATGTCGGGCAACACCTGTGCTGCTTCATTTGATTGGCGTTGCAGCGGAATTTGCAGGTCCGTTGAGAGAATGATGGATGTTCACCAGCGTTGTGGTGAAGACAAGAATGCTCTTTGGAACGCAAGGTTTTTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4094 Galactosyl_T

Protein Analysis

373

Amino Acids

42.01

Weight (kDa)

8.76

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 80 - 276 7.6e-48 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 1026
AccI GTMKAC 1 cut(s) 687
AccII CGCG 1 cut(s) 682
AciI CCGC 2 cut(s) 680, 1026
AclWI GGATC 1 cut(s) 904
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 4 cut(s) 172, 599, 761, 1029
AdeI CACNNNGTG 1 cut(s) 383
AfaI GTAC 3 cut(s) 302, 360, 955
AfiI CCNNNNNNNGG 2 cut(s) 260, 529
AgsI TTSAA 4 cut(s) 57, 159, 281, 482
AjnI CCWGG 2 cut(s) 537, 852
AjuI GAANNNNNNNTTGG 2 cut(s) 139, 171
Alw21I GWGCWC 1 cut(s) 495
Alw26I GTCTC 2 cut(s) 498, 934
AlwI GGATC 1 cut(s) 904
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 5 cut(s) 87, 209, 862, 1001, 1023
ApoI RAATTY 4 cut(s) 172, 599, 761, 1029
Asp700I GAANNNNTTC 2 cut(s) 302, 352
AspS9I GGNCC 3 cut(s) 710, 922, 1038
AsuHPI GGTGA 4 cut(s) 103, 395, 1055, 1088
AvaII GGWCC 3 cut(s) 710, 922, 1038
AxyI CCTNAGG 1 cut(s) 183
BalI TGGCCA 1 cut(s) 145
BanII GRGCYC 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 1086
Bbv12I GWGCWC 1 cut(s) 495
BbvI GCAGC 5 cut(s) 99, 221, 849, 988, 1035
BccI CCATC 2 cut(s) 15, 1048
BciT130I CCWGG 2 cut(s) 539, 854
BcoDI GTCTC 2 cut(s) 498, 934
BfaI CTAG 4 cut(s) 150, 401, 638, 663
BfmI CTRYAG 1 cut(s) 798
BfuAI ACCTGC 1 cut(s) 1026
BisI GCNGC 5 cut(s) 88, 210, 863, 1002, 1024
BlsI GCNGC 5 cut(s) 89, 211, 864, 1003, 1025
BmcAI AGTACT 1 cut(s) 302
Bme1390I CCNGG 2 cut(s) 539, 854
Bme18I GGWCC 3 cut(s) 710, 922, 1038
BmgT120I GGNCC 3 cut(s) 710, 922, 1038
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 2 cut(s) 539, 854
BmsI GCATC 2 cut(s) 363, 583
BpiI GAAGAC 1 cut(s) 1086
BsaAI YACGTR 1 cut(s) 362
BsaBI GATNNNNATC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 529
Bse1I ACTGG 1 cut(s) 713
Bse21I CCTNAGG 1 cut(s) 183
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 2 cut(s) 539, 854
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 6 cut(s) 26, 378, 598, 862, 937, 1063
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 260, 529
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 713
BseRI GAGGAG 2 cut(s) 42, 503
BseXI GCAGC 5 cut(s) 99, 221, 849, 988, 1035
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 2 cut(s) 106, 848
Bsh1236I CGCG 1 cut(s) 682
BshFI GGCC 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 495
BslFI GGGAC 1 cut(s) 664
BslI CCNNNNNNNGG 2 cut(s) 260, 529
BsmAI GTCTC 2 cut(s) 498, 934
BsmFI GGGAC 1 cut(s) 664
BsmI GAATGC 2 cut(s) 417, 1093
BsnI GGCC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 1 cut(s) 896
Bsp19I CCATGG 1 cut(s) 140
BspACI CCGC 2 cut(s) 680, 1026
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 1 cut(s) 682
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 1026
BspPI GGATC 1 cut(s) 904
BsrI ACTGG 1 cut(s) 713
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 1 cut(s) 896
BssNAI GTATAC 1 cut(s) 688
BssT1I CCWWGG 1 cut(s) 140
Bst1107I GTATAC 1 cut(s) 688
Bst2UI CCWGG 2 cut(s) 539, 854
Bst4CI ACNGT 5 cut(s) 277, 446, 671, 810, 968
Bst6I CTCTTC 2 cut(s) 343, 402
BstBAI YACGTR 1 cut(s) 362
BstDEI CTNAG 2 cut(s) 183, 913
BstDSI CCRYGG 1 cut(s) 140
BstENI CCTNNNNNAGG 1 cut(s) 258
BstF5I GGATG 6 cut(s) 26, 378, 598, 862, 937, 1063
BstFNI CGCG 1 cut(s) 682
BstKTI GATC 1 cut(s) 899
BstMAI GTCTC 2 cut(s) 498, 934
BstMBI GATC 1 cut(s) 896
BstMWI GCNNNNNNNGC 4 cut(s) 87, 218, 482, 1032
BstNI CCWGG 2 cut(s) 539, 854
BstSCI CCNGG 2 cut(s) 537, 852
BstSFI CTRYAG 1 cut(s) 798
BstUI CGCG 1 cut(s) 682
BstV1I GCAGC 5 cut(s) 99, 221, 849, 988, 1035
BstV2I GAAGAC 1 cut(s) 1086
BstX2I RGATCY 1 cut(s) 896
BstXI CCANNNNNNTGG 2 cut(s) 756, 1073
BstYI RGATCY 1 cut(s) 896
BstZ17I GTATAC 1 cut(s) 688
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 6 cut(s) 26, 378, 598, 862, 937, 1063
BtsIMutI CAGTG 1 cut(s) 451
BveI ACCTGC 1 cut(s) 1026
CciI TCATGA 1 cut(s) 244
Cfr13I GGNCC 3 cut(s) 710, 922, 1038
Csp6I GTAC 3 cut(s) 301, 359, 954
CspCI CAANNNNNGTGG 2 cut(s) 562, 597
CviAII CATG 8 cut(s) 141, 245, 307, 524, 629, 700, 743, 794
CviQI GTAC 3 cut(s) 301, 359, 954
DdeI CTNAG 2 cut(s) 183, 913
DpnI GATC 1 cut(s) 898
DpnII GATC 1 cut(s) 896
DraIII CACNNNGTG 1 cut(s) 383
DrdI GACNNNNNNGTC 1 cut(s) 658
DseDI GACNNNNNNGTC 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 143
Eam1104I CTCTTC 2 cut(s) 343, 402
EarI CTCTTC 2 cut(s) 343, 402
Ecl136II GAGCTC 1 cut(s) 493
Eco130I CCWWGG 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 495
Eco47I GGWCC 3 cut(s) 710, 922, 1038
Eco53kI GAGCTC 1 cut(s) 493
Eco81I CCTNAGG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 493
EcoNI CCTNNNNNAGG 1 cut(s) 258
EcoRI GAATTC 1 cut(s) 599
EcoRII CCWGG 2 cut(s) 537, 852
EcoT14I CCWWGG 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 8 cut(s) 144, 248, 310, 527, 632, 703, 746, 797
FalI AAGNNNNNCTT 4 cut(s) 287, 319, 551, 583
FaqI GGGAC 1 cut(s) 664
FatI CATG 8 cut(s) 140, 244, 306, 523, 628, 699, 742, 793
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 5 cut(s) 88, 210, 863, 1002, 1024
FokI GGATG 6 cut(s) 33, 385, 605, 869, 944, 1070
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 5 cut(s) 88, 210, 863, 1002, 1024
FspBI CTAG 4 cut(s) 150, 401, 638, 663
GluI GCNGC 5 cut(s) 88, 210, 863, 1002, 1024
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 1 cut(s) 145
Hin1II CATG 8 cut(s) 144, 248, 310, 527, 632, 703, 746, 797
HinfI GANTC 3 cut(s) 248, 318, 353
HphI GGTGA 4 cut(s) 103, 395, 1055, 1088
Hpy166II GTNNAC 3 cut(s) 688, 922, 1063
Hpy188I TCNGA 3 cut(s) 198, 292, 342
Hpy188III TCNNGA 8 cut(s) 134, 237, 245, 467, 663, 723, 757, 820
Hpy8I GTNNAC 3 cut(s) 688, 922, 1063
HpyAV CCTTC 3 cut(s) 406, 817, 970
HpyCH4III ACNGT 5 cut(s) 277, 446, 671, 810, 968
HpyCH4IV ACGT 1 cut(s) 361
HpyCH4V TGCA 6 cut(s) 87, 365, 699, 865, 1023, 1035
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 218, 482, 1032
HpyF3I CTNAG 2 cut(s) 183, 913
HpySE526I ACGT 1 cut(s) 361
Hsp92II CATG 8 cut(s) 144, 248, 310, 527, 632, 703, 746, 797
Kzo9I GATC 1 cut(s) 896
LmnI GCTCC 1 cut(s) 490
Lsp1109I GCAGC 5 cut(s) 99, 221, 849, 988, 1035
LweI GCATC 2 cut(s) 363, 583
MaeI CTAG 4 cut(s) 150, 401, 638, 663
MaeII ACGT 1 cut(s) 361
MalI GATC 1 cut(s) 898
MboI GATC 1 cut(s) 896
MboII GAAGA 7 cut(s) 211, 360, 398, 416, 419, 893, 1091
MflI RGATCY 1 cut(s) 896
MhlI GDGCHC 1 cut(s) 495
MlsI TGGCCA 1 cut(s) 145
MluCI AATT 7 cut(s) 159, 172, 281, 542, 599, 761, 1029
MluNI TGGCCA 1 cut(s) 145
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 8 cut(s) 11, 20, 178, 481, 507, 523, 728, 763
Mox20I TGGCCA 1 cut(s) 145
MroXI GAANNNNTTC 2 cut(s) 302, 352
MscI TGGCCA 1 cut(s) 145
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 870
Msp20I TGGCCA 1 cut(s) 145
MspA1I CMGCKG 4 cut(s) 212, 455, 578, 1026
MspR9I CCNGG 2 cut(s) 539, 854
Mva1269I GAATGC 2 cut(s) 417, 1093
MvaI CCWGG 2 cut(s) 539, 854
MvnI CGCG 1 cut(s) 682
MwoI GCNNNNNNNGC 4 cut(s) 87, 218, 482, 1032
NcoI CCATGG 1 cut(s) 140
NdeII GATC 1 cut(s) 896
NlaIII CATG 8 cut(s) 144, 248, 310, 527, 632, 703, 746, 797
NlaIV GGNNCC 1 cut(s) 132
PagI TCATGA 1 cut(s) 244
PctI GAATGC 2 cut(s) 417, 1093
PdmI GAANNNNTTC 2 cut(s) 302, 352
PfeI GAWTC 2 cut(s) 318, 353
PkrI GCNGC 5 cut(s) 89, 211, 864, 1003, 1025
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Ppu21I YACGTR 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 537, 852
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 537, 852
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 3 cut(s) 710, 922, 1038
PsuI RGATCY 1 cut(s) 896
PvuII CAGCTG 3 cut(s) 212, 455, 578
RsaI GTAC 3 cut(s) 302, 360, 955
RsaNI GTAC 3 cut(s) 301, 359, 954
RseI CAYNNNNRTG 1 cut(s) 870
SacI GAGCTC 1 cut(s) 495
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 5 cut(s) 88, 210, 863, 1002, 1024
Sau3AI GATC 1 cut(s) 896
Sau96I GGNCC 3 cut(s) 710, 922, 1038
ScaI AGTACT 1 cut(s) 302
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 2 cut(s) 539, 854
SduI GDGCHC 1 cut(s) 495
SfaNI GCATC 2 cut(s) 363, 583
SfcI CTRYAG 1 cut(s) 798
SinI GGWCC 3 cut(s) 710, 922, 1038
SmiMI CAYNNNNRTG 1 cut(s) 870
Sse9I AATT 7 cut(s) 159, 172, 281, 542, 599, 761, 1029
SsiI CCGC 2 cut(s) 680, 1026
SspMI CTAG 4 cut(s) 150, 401, 638, 663
SstI GAGCTC 1 cut(s) 495
StyD4I CCNGG 2 cut(s) 537, 852
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 5 cut(s) 277, 446, 671, 810, 968
TaiI ACGT 1 cut(s) 364
TaqI TCGA 3 cut(s) 269, 724, 821
TasI AATT 7 cut(s) 159, 172, 281, 542, 599, 761, 1029
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 2 cut(s) 318, 353
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 1 cut(s) 451
TseI GCWGC 5 cut(s) 87, 209, 862, 1001, 1023
TspDTI ATGAA 8 cut(s) 152, 295, 716, 759, 879, 894, 895, 996
TspGWI ACGGA 1 cut(s) 1030
TspRI CASTG 1 cut(s) 451
VpaK11BI GGWCC 3 cut(s) 710, 922, 1038
XagI CCTNNNNNAGG 1 cut(s) 258
XapI RAATTY 4 cut(s) 172, 599, 761, 1029
XbaI TCTAGA 1 cut(s) 662
XmiI GTMKAC 1 cut(s) 687
XmnI GAANNNNTTC 2 cut(s) 302, 352
XspI CTAG 4 cut(s) 150, 401, 638, 663
ZrmI AGTACT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.