MD05G1347600.v1.1

beta-1,3-galactosyltransferase 3

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
46642368 .. 46646217
3850 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1347600.v1.1.491

Sequence Viewer

Length: 1209 bp
ATGGGGAGGAGAGGTAATAGTGAGGAATGTGATATCAAGGAACTGGGCTCTTTTGCTTTGCTTCTGCAGCTTCTGTGCTGGAGTTTTATTTACCAACAGATGAGCAAAGACAAATGCGTGTTATGGATGATGCCCGAGTCAAGGCCATCGAGAATTGGAGCTGAAAAGATATTCTCCGAATCTGATGCTTTTGATCATAAGCTTGTTTTAAAGCACGCGACCAGTGACAATTCAGCGGAAGCTACTAATCAAGTGATTCAGCAGCTAAATAAAACGATTTCAGATTTGGAGATGAAATTAGCCGCTGCTAGGGCAACTCATGAATCTGTACATAATGGATATCCTACGTCAGGAAACTTGAAGACTGTTCAATCATCTTCCAAAAAAAAGTACTTCATGTTTATAGGGATCAATACAGCTTTTAATAGCCGAAAAAGAAGAGATTCAGTACGTGCAACTTGGATGCCTCAAGGTGAGGATAGAAAGAAGCTCGAAGAAGAGAAGGGCATAATTATACGGTTTGTTATAGGTCACAGTTCGACAGCTGGTGGTATTCTTGATAAAGCAGTTGAAGCAGAGGAGCGCGTCCATGGAGACTTCCTGAGGCTGGACCATGTTGAAGGATACCTGGAATTATCAGCCAAAACAAAGACATATTTTTCGACAGCTGTTGCCTTGTGGGATGCTGAATTTTATATCAAAGTTGATGATGACGTCCATGTAAATTTAGCAACGCTTGGAATGATTTTATCTAGACACCGTCTGAAACCCCGAGTCTACATTGGCTGCATGAAGTCAGGTCCAGTCCTTGCTCGAAAGGGAGTGAAATACCATGAGCCAGAGTTTTGGAAATTTGGTGAGATAGGAAACAAGTATTTTCGGCATGCTACGGGACAGTTATATGCTATCTCAAAAGATTTGGCAACTTACATATCAATAAACCAGGATGTGCTGCACAAATATGCCAATGAAGATGTTTCGTTGGGATCTTGGTTTATTGGTTTAGACGTAGAACAGGTGGACGATAGAAGACTCTGCTGTGGTACCACGCCAGATTGTATGTGGAAGAAAATGGCAGGCAACACCTGCGCTGCTTCATTTGACTGGCGATGCAGCGGGATTTGTAAGTCTATTGAGAGGATGATGGGCATTCACGAGCACTGTGGTGAAGACAAGAATGCTGTTTGGAGTGCAAGATTTTCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

403

Amino Acids

45.6

Weight (kDa)

8.37

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4094 PF13334 42 - 105 2.4e-07 Domain of unknown function (DUF4094)
Galactosyl_T PF01762 145 - 341 1.5e-48 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1094
AatII GACGTC 1 cut(s) 717
Acc36I ACCTGC 1 cut(s) 1094
Acc65I GGTACC 1 cut(s) 1043
AccB1I GGYRCC 1 cut(s) 1043
AccI GTMKAC 1 cut(s) 777
AccII CGCG 2 cut(s) 218, 585
AciI CCGC 3 cut(s) 236, 303, 1116
AclWI GGATC 2 cut(s) 416, 994
AcsI RAATTY 3 cut(s) 689, 724, 851
AcyI GRCGYC 1 cut(s) 714
AfaI GTAC 4 cut(s) 330, 392, 450, 1045
AfiI CCNNNNNNNGG 4 cut(s) 141, 309, 350, 607
AgsI TTSAA 4 cut(s) 361, 371, 572, 620
AjnI CCWGG 2 cut(s) 627, 942
AleI CACNNNNGTG 1 cut(s) 1164
AluBI AGCT 9 cut(s) 70, 161, 202, 242, 265, 419, 490, 545, 668
AluI AGCT 9 cut(s) 70, 161, 202, 242, 265, 419, 490, 545, 668
Alw21I GWGCWC 1 cut(s) 1161
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 2 cut(s) 416, 994
AlwNI CAGNNNCTG 1 cut(s) 73
Ama87I CYCGRG 2 cut(s) 134, 771
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 7 cut(s) 67, 262, 305, 786, 952, 1091, 1113
ApoI RAATTY 3 cut(s) 689, 724, 851
ArsI GACNNNNNNTTYG 2 cut(s) 643, 675
Asp700I GAANNNNTTC 1 cut(s) 442
Asp718I GGTACC 1 cut(s) 1043
AspLEI GCGC 2 cut(s) 585, 1091
AspS9I GGNCC 2 cut(s) 610, 800
AsuHPI GGTGA 3 cut(s) 485, 869, 1178
AvaI CYCGRG 2 cut(s) 134, 771
AvaII GGWCC 2 cut(s) 610, 800
AxyI CCTNAGG 1 cut(s) 602
BanI GGYRCC 1 cut(s) 1043
BanII GRGCYC 1 cut(s) 50
BauI CACGAG 1 cut(s) 1154
BbsI GAAGAC 3 cut(s) 368, 1036, 1176
Bbv12I GWGCWC 1 cut(s) 1161
BbvI GCAGC 7 cut(s) 79, 274, 292, 773, 939, 1078, 1125
BccI CCATC 2 cut(s) 154, 1138
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 2 cut(s) 629, 944
BciVI GTATCC 1 cut(s) 617
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 588
BfaI CTAG 2 cut(s) 309, 753
BfmI CTRYAG 1 cut(s) 65
BfuAI ACCTGC 1 cut(s) 1094
BfuI GTATCC 1 cut(s) 617
BisI GCNGC 8 cut(s) 68, 263, 303, 306, 787, 953, 1092, 1114
BlsI GCNGC 8 cut(s) 69, 264, 304, 307, 788, 954, 1093, 1115
BmcAI AGTACT 1 cut(s) 392
Bme1390I CCNGG 2 cut(s) 629, 944
Bme18I GGWCC 2 cut(s) 610, 800
BmeT110I CYCGRG 2 cut(s) 134, 771
BmgT120I GGNCC 2 cut(s) 610, 800
BmiI GGNNCC 1 cut(s) 1045
BmrFI CCNGG 2 cut(s) 629, 944
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 5 cut(s) 120, 175, 453, 673, 1100
BmuI ACTGGG 1 cut(s) 53
BpiI GAAGAC 3 cut(s) 368, 1036, 1176
BpmI CTGGAG 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 453
BsaAI YACGTR 1 cut(s) 452
BsaHI GRCGYC 1 cut(s) 714
BsaJI CCNNGG 1 cut(s) 589
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 309, 350, 607
Bse1I ACTGG 4 cut(s) 48, 222, 803, 1109
Bse21I CCTNAGG 1 cut(s) 602
BseBI CCWGG 2 cut(s) 629, 944
BseDI CCNNGG 1 cut(s) 589
BseGI GGATG 5 cut(s) 132, 468, 688, 952, 1146
BseLI CCNNNNNNNGG 4 cut(s) 141, 309, 350, 607
BseMII CTCAG 1 cut(s) 593
BseNI ACTGG 4 cut(s) 48, 222, 803, 1109
BseRI GAGGAG 2 cut(s) 22, 593
BseXI GCAGC 7 cut(s) 79, 274, 292, 773, 939, 1078, 1125
BsgI GTGCAG 1 cut(s) 938
Bsh1236I CGCG 2 cut(s) 218, 585
BshFI GGCC 1 cut(s) 145
BshNI GGYRCC 1 cut(s) 1043
BsiHKAI GWGCWC 1 cut(s) 1161
BsiHKCI CYCGRG 2 cut(s) 134, 771
BslFI GGGAC 1 cut(s) 906
BslI CCNNNNNNNGG 4 cut(s) 141, 309, 350, 607
BsmAI GTCTC 1 cut(s) 588
BsmFI GGGAC 1 cut(s) 906
BsmI GAATGC 2 cut(s) 1149, 1183
BsnI GGCC 1 cut(s) 145
BsoBI CYCGRG 2 cut(s) 134, 771
Bsp1286I GDGCHC 2 cut(s) 50, 1161
Bsp1407I TGTACA 1 cut(s) 328
Bsp143I GATC 3 cut(s) 193, 408, 986
Bsp19I CCATGG 1 cut(s) 589
BspACI CCGC 3 cut(s) 236, 303, 1116
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 594
BspFNI CGCG 2 cut(s) 218, 585
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 1045
BspMAI CTGCAG 1 cut(s) 69
BspMI ACCTGC 1 cut(s) 1094
BspPI GGATC 2 cut(s) 416, 994
BspT107I GGYRCC 1 cut(s) 1043
BsrGI TGTACA 1 cut(s) 328
BsrI ACTGG 4 cut(s) 48, 222, 803, 1109
BssECI CCNNGG 1 cut(s) 589
BssMI GATC 3 cut(s) 193, 408, 986
BssNI GRCGYC 1 cut(s) 714
BssSI CACGAG 1 cut(s) 1154
BssT1I CCWWGG 1 cut(s) 589
Bst2BI CACGAG 1 cut(s) 1154
Bst2UI CCWGG 2 cut(s) 629, 944
Bst4CI ACNGT 6 cut(s) 367, 519, 536, 761, 897, 1163
Bst6I CTCTTC 2 cut(s) 433, 492
BstACI GRCGYC 1 cut(s) 714
BstAPI GCANNNNNTGC 1 cut(s) 1086
BstAUI TGTACA 1 cut(s) 328
BstBAI YACGTR 1 cut(s) 452
BstC8I GCNNGC 3 cut(s) 216, 885, 1078
BstDEI CTNAG 2 cut(s) 602, 1203
BstDSI CCRYGG 1 cut(s) 589
BstENI CCTNNNNNAGG 1 cut(s) 348
BstF5I GGATG 5 cut(s) 132, 468, 688, 952, 1146
BstFNI CGCG 2 cut(s) 218, 585
BstHHI GCGC 2 cut(s) 585, 1091
BstKTI GATC 3 cut(s) 196, 411, 989
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 3 cut(s) 193, 408, 986
BstMWI GCNNNNNNNGC 4 cut(s) 67, 311, 572, 1086
BstNI CCWGG 2 cut(s) 629, 944
BstNSI RCATGY 1 cut(s) 887
BstSCI CCNGG 2 cut(s) 627, 942
BstSFI CTRYAG 1 cut(s) 65
BstUI CGCG 2 cut(s) 218, 585
BstV1I GCAGC 7 cut(s) 79, 274, 292, 773, 939, 1078, 1125
BstV2I GAAGAC 3 cut(s) 368, 1036, 1176
BstX2I RGATCY 1 cut(s) 986
BstXI CCANNNNNNTGG 1 cut(s) 846
BstYI RGATCY 1 cut(s) 986
Bsu36I CCTNAGG 1 cut(s) 602
BsuI GTATCC 1 cut(s) 617
BsuRI GGCC 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 589
BtgZI GCGATG 1 cut(s) 1123
BtsCI GGATG 5 cut(s) 132, 468, 688, 952, 1146
BtsIMutI CAGTG 2 cut(s) 229, 1159
BveI ACCTGC 1 cut(s) 1094
Cac8I GCNNGC 3 cut(s) 216, 885, 1078
CaiI CAGNNNCTG 1 cut(s) 73
CciI TCATGA 1 cut(s) 319
CfoI GCGC 2 cut(s) 585, 1091
Cfr13I GGNCC 2 cut(s) 610, 800
CseI GACGC 1 cut(s) 574
Csp6I GTAC 4 cut(s) 329, 391, 449, 1044
CviAII CATG 8 cut(s) 320, 397, 590, 614, 719, 790, 833, 884
CviQI GTAC 4 cut(s) 329, 391, 449, 1044
DdeI CTNAG 2 cut(s) 602, 1203
DpnI GATC 3 cut(s) 195, 410, 988
DpnII GATC 3 cut(s) 193, 408, 986
DraI TTTAAA 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 433, 492
EarI CTCTTC 2 cut(s) 433, 492
Eco130I CCWWGG 1 cut(s) 589
Eco24I GRGCYC 1 cut(s) 50
Eco32I GATATC 2 cut(s) 34, 341
Eco47I GGWCC 2 cut(s) 610, 800
Eco81I CCTNAGG 1 cut(s) 602
Eco88I CYCGRG 2 cut(s) 134, 771
EcoNI CCTNNNNNAGG 1 cut(s) 348
EcoRII CCWGG 2 cut(s) 627, 942
EcoRV GATATC 2 cut(s) 34, 341
EcoT14I CCWWGG 1 cut(s) 589
EcoT38I GRGCYC 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 589
FaeI CATG 8 cut(s) 323, 400, 593, 617, 722, 793, 836, 887
FaqI GGGAC 1 cut(s) 906
FatI CATG 8 cut(s) 319, 396, 589, 613, 718, 789, 832, 883
FauI CCCGC 1 cut(s) 1109
FbaI TGATCA 1 cut(s) 193
FblI GTMKAC 1 cut(s) 777
Fnu4HI GCNGC 8 cut(s) 68, 263, 303, 306, 787, 953, 1092, 1114
FokI GGATG 5 cut(s) 139, 475, 695, 959, 1153
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 8 cut(s) 68, 263, 303, 306, 787, 953, 1092, 1114
FspBI CTAG 2 cut(s) 309, 753
GlaI GCGC 2 cut(s) 584, 1090
GluI GCNGC 8 cut(s) 68, 263, 303, 306, 787, 953, 1092, 1114
GsuI CTGGAG 1 cut(s) 100
HaeIII GGCC 1 cut(s) 145
HgaI GACGC 1 cut(s) 574
HhaI GCGC 2 cut(s) 585, 1091
Hin1I GRCGYC 1 cut(s) 714
Hin1II CATG 8 cut(s) 323, 400, 593, 617, 722, 793, 836, 887
Hin6I GCGC 2 cut(s) 583, 1089
HinP1I GCGC 2 cut(s) 583, 1089
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 7 cut(s) 137, 179, 256, 323, 443, 774, 1032
HphI GGTGA 3 cut(s) 485, 869, 1178
Hpy166II GTNNAC 2 cut(s) 778, 1021
Hpy188I TCNGA 4 cut(s) 178, 184, 283, 765
Hpy188III TCNNGA 7 cut(s) 150, 320, 351, 557, 601, 753, 1154
Hpy8I GTNNAC 2 cut(s) 778, 1021
HpyAV CCTTC 2 cut(s) 496, 614
HpyCH4III ACNGT 6 cut(s) 367, 519, 536, 761, 897, 1163
HpyCH4IV ACGT 4 cut(s) 347, 451, 714, 1008
HpyCH4V TGCA 6 cut(s) 67, 455, 789, 955, 1113, 1193
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 311, 572, 1086
HpyF3I CTNAG 2 cut(s) 602, 1203
HpySE526I ACGT 4 cut(s) 347, 451, 714, 1008
Hsp92I GRCGYC 1 cut(s) 714
Hsp92II CATG 8 cut(s) 323, 400, 593, 617, 722, 793, 836, 887
HspAI GCGC 2 cut(s) 583, 1089
KpnI GGTACC 1 cut(s) 1047
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 3 cut(s) 193, 408, 986
LmnI GCTCC 2 cut(s) 158, 580
Lsp1109I GCAGC 7 cut(s) 79, 274, 292, 773, 939, 1078, 1125
LweI GCATC 5 cut(s) 120, 175, 453, 673, 1100
MaeI CTAG 2 cut(s) 309, 753
MaeII ACGT 4 cut(s) 347, 451, 714, 1008
MaeIII GTNAC 2 cut(s) 224, 530
MalI GATC 3 cut(s) 195, 410, 988
MboI GATC 3 cut(s) 193, 408, 986
MboII GAAGA 9 cut(s) 369, 373, 450, 506, 509, 983, 1041, 1078, 1181
MflI RGATCY 1 cut(s) 986
MhlI GDGCHC 2 cut(s) 50, 1161
MluCI AATT 8 cut(s) 153, 229, 296, 510, 632, 689, 724, 851
MlyI GAGTC 3 cut(s) 146, 783, 1026
MnlI CCTC 7 cut(s) 5, 16, 469, 477, 571, 597, 1131
MroXI GAANNNNTTC 1 cut(s) 442
MseI TTAA 2 cut(s) 209, 423
MslI CAYNNNNRTG 2 cut(s) 960, 1164
MspA1I CMGCKG 5 cut(s) 236, 305, 545, 668, 1116
MspR9I CCNGG 2 cut(s) 629, 944
Mva1269I GAATGC 2 cut(s) 1149, 1183
MvaI CCWGG 2 cut(s) 629, 944
MvnI CGCG 2 cut(s) 218, 585
MwoI GCNNNNNNNGC 4 cut(s) 67, 311, 572, 1086
NcoI CCATGG 1 cut(s) 589
NdeII GATC 3 cut(s) 193, 408, 986
NlaIII CATG 8 cut(s) 323, 400, 593, 617, 722, 793, 836, 887
NlaIV GGNNCC 1 cut(s) 1045
NmuCI GTSAC 2 cut(s) 224, 530
NspI RCATGY 1 cut(s) 887
OliI CACNNNNGTG 1 cut(s) 1164
PaeI GCATGC 1 cut(s) 887
PagI TCATGA 1 cut(s) 319
PaqCI CACCTGC 1 cut(s) 1094
PctI GAATGC 2 cut(s) 1149, 1183
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 4 cut(s) 179, 256, 323, 443
PflFI GACNNNGTC 1 cut(s) 759
PkrI GCNGC 8 cut(s) 69, 264, 304, 307, 788, 954, 1093, 1115
PleI GAGTC 3 cut(s) 145, 782, 1026
PpsI GAGTC 3 cut(s) 145, 782, 1026
Ppu21I YACGTR 1 cut(s) 452
Psp6I CCWGG 2 cut(s) 627, 942
PspGI CCWGG 2 cut(s) 627, 942
PspN4I GGNNCC 1 cut(s) 1045
PspPI GGNCC 2 cut(s) 610, 800
PstI CTGCAG 1 cut(s) 69
PstNI CAGNNNCTG 1 cut(s) 73
PsuI RGATCY 1 cut(s) 986
PsyI GACNNNGTC 1 cut(s) 759
PvuII CAGCTG 2 cut(s) 545, 668
RsaI GTAC 4 cut(s) 330, 392, 450, 1045
RsaNI GTAC 4 cut(s) 329, 391, 449, 1044
RseI CAYNNNNRTG 2 cut(s) 960, 1164
SaqAI TTAA 2 cut(s) 209, 423
SatI GCNGC 8 cut(s) 68, 263, 303, 306, 787, 953, 1092, 1114
Sau3AI GATC 3 cut(s) 193, 408, 986
Sau96I GGNCC 2 cut(s) 610, 800
ScaI AGTACT 1 cut(s) 392
SchI GAGTC 3 cut(s) 146, 783, 1026
ScrFI CCNGG 2 cut(s) 629, 944
SduI GDGCHC 2 cut(s) 50, 1161
SfaNI GCATC 5 cut(s) 120, 175, 453, 673, 1100
SfcI CTRYAG 1 cut(s) 65
SinI GGWCC 2 cut(s) 610, 800
SmiMI CAYNNNNRTG 2 cut(s) 960, 1164
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
SphI GCATGC 1 cut(s) 887
Sse9I AATT 8 cut(s) 153, 229, 296, 510, 632, 689, 724, 851
SsiI CCGC 3 cut(s) 236, 303, 1116
SspMI CTAG 2 cut(s) 309, 753
StyD4I CCNGG 2 cut(s) 627, 942
StyI CCWWGG 1 cut(s) 589
TaaI ACNGT 6 cut(s) 367, 519, 536, 761, 897, 1163
TaiI ACGT 4 cut(s) 350, 454, 717, 1011
TaqI TCGA 5 cut(s) 149, 492, 539, 662, 814
TasI AATT 8 cut(s) 153, 229, 296, 510, 632, 689, 724, 851
TatI WGTACW 2 cut(s) 328, 390
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 4 cut(s) 179, 256, 323, 443
Tru1I TTAA 2 cut(s) 209, 423
Tru9I TTAA 2 cut(s) 209, 423
TscAI CASTG 2 cut(s) 229, 1166
TseFI GTSAC 2 cut(s) 224, 530
TseI GCWGC 7 cut(s) 67, 262, 305, 786, 952, 1091, 1113
Tsp45I GTSAC 2 cut(s) 224, 530
TspDTI ATGAA 6 cut(s) 308, 336, 385, 806, 984, 1086
TspRI CASTG 2 cut(s) 229, 1166
Tth111I GACNNNGTC 1 cut(s) 759
VpaK11BI GGWCC 2 cut(s) 610, 800
XagI CCTNNNNNAGG 1 cut(s) 348
XapI RAATTY 3 cut(s) 689, 724, 851
XbaI TCTAGA 1 cut(s) 752
XceI RCATGY 1 cut(s) 887
XcmI CCANNNNNNNNNTGG 1 cut(s) 1059
XmiI GTMKAC 1 cut(s) 777
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 2 cut(s) 309, 753
ZraI GACGTC 1 cut(s) 715
ZrmI AGTACT 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.