Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008967

Physical Location & Seq

Genomic Coordinates Reverse (-)

1755846 .. 1758504

Gene Structure 2659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031070

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTCTATAAAGAGCAGAGGATGGGGAGGAGAGATAACAATAAGGAATGTGATTTCAAAGAACTTGGCTCTTCTGCTATGCTTGTGCAGCTTCTTTGCTGGGATATTATTCACCAACAGGTTGTGGATGGTTCCTGAATCGTGGCCATCTAGAATTGCAGTTGAAAGGATAAATTCCGAACCTGAGGATTGTAATCAGAAGATTATAGCAGCTGCTAGGGCAATTCAAGAGTCATCTTTACATCATGACTCTCCTGTGTTAGGAAACTCGAAGACTGTTCAATCAGCTTTAAAAAAGAAGTACTTTATGGTTATAGGGATCAATACAGCTTTTAATAGCCGAAAAAGAAGAGATTCAGTACGTGCAACTTGGATGCCACAAGGTGAGGAAAGAAAGAAGCTAGAAGAAGAGAAGGGCATACTCATACGCTTTGTTATAGGCCACAGTGCGACAGCTGGTGGTATTCTTGATAAAGCTATTGAAGCAGAGGAGCTCGTCCATGGAGACTTCTTGAGGCTGAACCATGTTGAGGGCTACCTGGAATTATCAGCCAAGACAAAGACCTACTTTTCCACAGCTGTTTCTTTGTGGGATGCTGAATTCTATATCAAAGTTGATGATGATGTCCATGTAAATCTAGCTACACTTGGGACAATTCTGTCTAGACACCGTGTGAAACGGCGAGTATATATTGGTTGCATGAAGTCAGGTCCAGTCCTCGCTCGAAAGGGCGTTAAATACCATGAACCAGAGTTCTGGAAATTTGGGGAGGTGGGAAACAAGTATTTTCGTCATGCTACAGGACAATTATATGCTATTTCAAAGGATTTGGCAACTTACATATCAGTAAACCAGGATGTGCTGCACAAATATGCCAATGAAGATGTTTCCTTGGGATCTTGGTTCATTGGGCTAGACGTGGACCAAGTGGATGATAGGAGACTTTGTTGTGGTACTCCACCTGATTGTGTGTGGAAGGGTATGTCGGGCAACACCTGTGCTGCTTCATTTGATTGGCGTTGCAGTGGCATTTGCAGGTCCATTGAGAGAATGATGGATGTTCACCAGCGTTGCGGTGAAGACAAGAATGCTCTTTGGAATGCAAGGTTTTCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

373

Amino Acids

42.1

Weight (kDa)

8.77

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	19 - 72	2.5e-09	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	115 - 311	1.2e-47	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11730
fragaria_vesca	FvH4_3g02020 FvH4_3g02020 FvH4_3g02020 FvH4_3g02020
malus_domestica	MD05G1347600.v1.1 MD10G1322000.v1.1
prunus_persica	Prupe.4G020000_v2.0.a1 Prupe.4G020000_v2.0.a1 Prupe.4G020000_v2.0.a1
pyrus_communis	pycom05g31520 pycom10g27250
rosa_chinensis	RchiOBHm_Chr5g0002921
rosa_laevigata	RLG00000031070
rosa_multiflora	Rmu_sc0013603.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072930
rosa_rugosa	Rorug04G0400600
rosa_samantha	Rh5AG023500 Rh5BG026200 Rh5CG026200 Rh5DG024900
rosa_wichuraiana	Rw5G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	658
Acc36I	ACCTGC	1 cut(s)	1026
AciI	CCGC	1 cut(s)	1074
AclWI	GGATC	2 cut(s)	326, 904
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	3 cut(s)	172, 599, 761
AdeI	CACNNNGTG	2 cut(s)	383, 673
AfaI	GTAC	3 cut(s)	302, 360, 955
AfiI	CCNNNNNNNGG	2 cut(s)	260, 529
AgsI	TTSAA	6 cut(s)	57, 164, 227, 281, 482, 822
AjiI	CACGTC	1 cut(s)	919
AjnI	CCWGG	2 cut(s)	537, 852
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	2 cut(s)	498, 934
AlwI	GGATC	2 cut(s)	326, 904
AoxI	GGCC	2 cut(s)	143, 439
ApeKI	GCWGC	5 cut(s)	87, 209, 212, 862, 1001
ApoI	RAATTY	3 cut(s)	172, 599, 761
Asp700I	GAANNNNTTC	1 cut(s)	352
AspS9I	GGNCC	3 cut(s)	710, 922, 1038
AsuHPI	GGTGA	4 cut(s)	103, 395, 1055, 1088
AvaII	GGWCC	3 cut(s)	710, 922, 1038
AxyI	CCTNAGG	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	495
BbsI	GAAGAC	2 cut(s)	278, 1086
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	5 cut(s)	99, 199, 221, 849, 988
BccI	CCATC	4 cut(s)	15, 121, 154, 1048
BceAI	ACGGC	1 cut(s)	695
BciT130I	CCWGG	2 cut(s)	539, 854
BcoDI	GTCTC	2 cut(s)	498, 934
BfaI	CTAG	6 cut(s)	150, 216, 401, 638, 663, 914
BfmI	CTRYAG	1 cut(s)	798
BfuAI	ACCTGC	1 cut(s)	1026
BisI	GCNGC	5 cut(s)	88, 210, 213, 863, 1002
BlsI	GCNGC	5 cut(s)	89, 211, 214, 864, 1003
BmcAI	AGTACT	1 cut(s)	302
Bme1390I	CCNGG	2 cut(s)	539, 854
Bme18I	GGWCC	3 cut(s)	710, 922, 1038
BmgBI	CACGTC	1 cut(s)	919
BmgT120I	GGNCC	3 cut(s)	710, 922, 1038
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	539, 854
BmsI	GCATC	2 cut(s)	363, 583
BpiI	GAAGAC	2 cut(s)	278, 1086
BpuEI	CTTGAG	1 cut(s)	532
BsaAI	YACGTR	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	499, 891
BsaXI	ACNNNNNCTCC	2 cut(s)	931, 961
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 529
Bse1I	ACTGG	1 cut(s)	713
Bse21I	CCTNAGG	1 cut(s)	183
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	539, 854
BseDI	CCNNGG	2 cut(s)	499, 891
BseGI	GGATG	7 cut(s)	26, 132, 378, 598, 862, 937, 1063
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	260, 529
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	713
BseRI	GAGGAG	2 cut(s)	42, 503
BseXI	GCAGC	5 cut(s)	99, 199, 221, 849, 988
BseYI	CCCAGC	1 cut(s)	98
BsgI	GTGCAG	2 cut(s)	106, 848
BshFI	GGCC	2 cut(s)	145, 441
BsiHKAI	GWGCWC	1 cut(s)	495
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	2 cut(s)	260, 529
BsmAI	GTCTC	2 cut(s)	498, 934
BsmFI	GGGAC	1 cut(s)	664
BsmI	GAATGC	2 cut(s)	1093, 1105
BsnI	GGCC	2 cut(s)	145, 441
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	2 cut(s)	318, 896
Bsp19I	CCATGG	1 cut(s)	499
BspACI	CCGC	1 cut(s)	1074
BspANI	GGCC	2 cut(s)	145, 441
BspCNI	CTCAG	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	1026
BspPI	GGATC	2 cut(s)	326, 904
BspQI	GCTCTTC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	713
BssECI	CCNNGG	2 cut(s)	499, 891
BssMI	GATC	2 cut(s)	318, 896
BssT1I	CCWWGG	2 cut(s)	499, 891
Bst2UI	CCWGG	2 cut(s)	539, 854
Bst4CI	ACNGT	3 cut(s)	277, 446, 671
Bst6I	CTCTTC	3 cut(s)	75, 343, 402
BstBAI	YACGTR	1 cut(s)	362
BstDEI	CTNAG	1 cut(s)	183
BstDSI	CCRYGG	1 cut(s)	499
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	7 cut(s)	26, 132, 378, 598, 862, 937, 1063
BstKTI	GATC	2 cut(s)	321, 899
BstMAI	GTCTC	2 cut(s)	498, 934
BstMBI	GATC	2 cut(s)	318, 896
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 218, 482
BstNI	CCWGG	2 cut(s)	539, 854
BstSCI	CCNGG	2 cut(s)	537, 852
BstSFI	CTRYAG	1 cut(s)	798
BstV1I	GCAGC	5 cut(s)	99, 199, 221, 849, 988
BstV2I	GAAGAC	2 cut(s)	278, 1086
BstX2I	RGATCY	1 cut(s)	896
BstXI	CCANNNNNNTGG	1 cut(s)	756
BstYI	RGATCY	1 cut(s)	896
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	145, 441
BtgI	CCRYGG	1 cut(s)	499
BtrI	CACGTC	1 cut(s)	919
BtsCI	GGATG	7 cut(s)	26, 132, 378, 598, 862, 937, 1063
BtsI	GCAGTG	1 cut(s)	1030
BtsIMutI	CAGTG	2 cut(s)	451, 1030
BveI	ACCTGC	1 cut(s)	1026
CciI	TCATGA	1 cut(s)	244
Cfr13I	GGNCC	3 cut(s)	710, 922, 1038
Csp6I	GTAC	3 cut(s)	301, 359, 954
CviAII	CATG	7 cut(s)	245, 500, 524, 629, 700, 743, 794
CviQI	GTAC	3 cut(s)	301, 359, 954
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	2 cut(s)	320, 898
DpnII	GATC	2 cut(s)	318, 896
DraI	TTTAAA	1 cut(s)	291
DraIII	CACNNNGTG	2 cut(s)	383, 673
DrdI	GACNNNNNNGTC	1 cut(s)	658
DseDI	GACNNNNNNGTC	1 cut(s)	658
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	3 cut(s)	75, 343, 402
EarI	CTCTTC	3 cut(s)	75, 343, 402
Ecl136II	GAGCTC	1 cut(s)	493
Eco130I	CCWWGG	2 cut(s)	499, 891
Eco24I	GRGCYC	1 cut(s)	495
Eco47I	GGWCC	3 cut(s)	710, 922, 1038
Eco53kI	GAGCTC	1 cut(s)	493
Eco81I	CCTNAGG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	493
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	537, 852
EcoT14I	CCWWGG	2 cut(s)	499, 891
EcoT38I	GRGCYC	1 cut(s)	495
ErhI	CCWWGG	2 cut(s)	499, 891
FaeI	CATG	7 cut(s)	248, 503, 527, 632, 703, 746, 797
FalI	AAGNNNNNCTT	4 cut(s)	287, 319, 551, 583
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	7 cut(s)	244, 499, 523, 628, 699, 742, 793
Fnu4HI	GCNGC	5 cut(s)	88, 210, 213, 863, 1002
FokI	GGATG	7 cut(s)	33, 139, 385, 605, 869, 944, 1070
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	5 cut(s)	88, 210, 213, 863, 1002
FspBI	CTAG	6 cut(s)	150, 216, 401, 638, 663, 914
GluI	GCNGC	5 cut(s)	88, 210, 213, 863, 1002
GsaI	CCCAGC	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	145, 441
Hin1II	CATG	7 cut(s)	248, 503, 527, 632, 703, 746, 797
HinfI	GANTC	4 cut(s)	137, 230, 248, 353
HphI	GGTGA	4 cut(s)	103, 395, 1055, 1088
Hpy166II	GTNNAC	3 cut(s)	850, 922, 1063
Hpy188I	TCNGA	3 cut(s)	178, 198, 1114
Hpy188III	TCNNGA	8 cut(s)	134, 150, 227, 245, 467, 511, 663, 757
Hpy8I	GTNNAC	3 cut(s)	850, 922, 1063
HpyAV	CCTTC	2 cut(s)	406, 970
HpyCH4III	ACNGT	3 cut(s)	277, 446, 671
HpyCH4IV	ACGT	2 cut(s)	361, 918
HpyCH4V	TGCA	8 cut(s)	87, 158, 365, 699, 865, 1023, 1035, 1103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 218, 482
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	2 cut(s)	361, 918
Hsp92II	CATG	7 cut(s)	248, 503, 527, 632, 703, 746, 797
Kzo9I	GATC	2 cut(s)	318, 896
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	5 cut(s)	99, 199, 221, 849, 988
LweI	GCATC	2 cut(s)	363, 583
MaeI	CTAG	6 cut(s)	150, 216, 401, 638, 663, 914
MaeII	ACGT	2 cut(s)	361, 918
MalI	GATC	2 cut(s)	320, 898
MboI	GATC	2 cut(s)	318, 896
MboII	GAAGA	8 cut(s)	62, 211, 283, 360, 416, 419, 893, 1091
MflI	RGATCY	1 cut(s)	896
MhlI	GDGCHC	1 cut(s)	495
MlsI	TGGCCA	1 cut(s)	145
MluCI	AATT	8 cut(s)	153, 172, 222, 542, 599, 654, 761, 806
MluNI	TGGCCA	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	239, 242
MnlI	CCTC	9 cut(s)	11, 20, 178, 379, 481, 507, 523, 728, 763
Mox20I	TGGCCA	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	145
MseI	TTAA	3 cut(s)	290, 333, 735
MslI	CAYNNNNRTG	1 cut(s)	870
Msp20I	TGGCCA	1 cut(s)	145
MspA1I	CMGCKG	3 cut(s)	212, 455, 578
MspR9I	CCNGG	2 cut(s)	539, 854
Mva1269I	GAATGC	2 cut(s)	1093, 1105
MvaI	CCWGG	2 cut(s)	539, 854
MwoI	GCNNNNNNNGC	3 cut(s)	87, 218, 482
NcoI	CCATGG	1 cut(s)	499
NdeII	GATC	2 cut(s)	318, 896
NlaIII	CATG	7 cut(s)	248, 503, 527, 632, 703, 746, 797
NlaIV	GGNNCC	1 cut(s)	132
PagI	TCATGA	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	75
PctI	GAATGC	2 cut(s)	1093, 1105
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	137, 353
PkrI	GCNGC	5 cut(s)	89, 211, 214, 864, 1003
PleI	GAGTC	2 cut(s)	238, 242
PpsI	GAGTC	2 cut(s)	238, 242
Ppu21I	YACGTR	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	537, 852
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	2 cut(s)	537, 852
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	3 cut(s)	710, 922, 1038
PsuI	RGATCY	1 cut(s)	896
PvuII	CAGCTG	3 cut(s)	212, 455, 578
RsaI	GTAC	3 cut(s)	302, 360, 955
RsaNI	GTAC	3 cut(s)	301, 359, 954
RseI	CAYNNNNRTG	1 cut(s)	870
SacI	GAGCTC	1 cut(s)	495
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	290, 333, 735
SatI	GCNGC	5 cut(s)	88, 210, 213, 863, 1002
Sau3AI	GATC	2 cut(s)	318, 896
Sau96I	GGNCC	3 cut(s)	710, 922, 1038
ScaI	AGTACT	1 cut(s)	302
SchI	GAGTC	2 cut(s)	239, 242
ScrFI	CCNGG	2 cut(s)	539, 854
SduI	GDGCHC	1 cut(s)	495
SfaNI	GCATC	2 cut(s)	363, 583
SfcI	CTRYAG	1 cut(s)	798
SinI	GGWCC	3 cut(s)	710, 922, 1038
SmiMI	CAYNNNNRTG	1 cut(s)	870
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	8 cut(s)	153, 172, 222, 542, 599, 654, 761, 806
SsiI	CCGC	1 cut(s)	1074
SspMI	CTAG	6 cut(s)	150, 216, 401, 638, 663, 914
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	537, 852
StyI	CCWWGG	2 cut(s)	499, 891
TaaI	ACNGT	3 cut(s)	277, 446, 671
TaiI	ACGT	2 cut(s)	364, 921
TaqI	TCGA	2 cut(s)	269, 724
TasI	AATT	8 cut(s)	153, 172, 222, 542, 599, 654, 761, 806
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	2 cut(s)	137, 353
Tru1I	TTAA	3 cut(s)	290, 333, 735
Tru9I	TTAA	3 cut(s)	290, 333, 735
TscAI	CASTG	2 cut(s)	451, 1030
TseI	GCWGC	5 cut(s)	87, 209, 212, 862, 1001
TspDTI	ATGAA	5 cut(s)	716, 759, 894, 895, 996
TspRI	CASTG	2 cut(s)	451, 1030
VpaK11BI	GGWCC	3 cut(s)	710, 922, 1038
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	3 cut(s)	172, 599, 761
XbaI	TCTAGA	2 cut(s)	149, 662
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	6 cut(s)	150, 216, 401, 638, 663, 914
ZrmI	AGTACT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.