Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009269

Physical Location & Seq

Genomic Coordinates Reverse (-)

4394897 .. 4396291

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGAACGAGCAGCGATCCGATTCAAGATGGTTCCGATGAGCAGCAGAAGCGATCAGAGATCTATACATACGAAGCGCCATGGCACATCTACGCAATGAATTGGAGCGTTCGTCGCGATAAGAAGTATCGTCTCGCCATCACTAGCCTCCTCGAGCAATACCCGAACCGTGTCGAGATTGTGCAGCTCGATGAATCCAATGGTGAGATCCGTTCCGATCCTAACCTCTCCTTTGAGCATCCTTATCCACCAACGAAGACCATTTTCATACCTGACAAGGAATGCCAAAGACCTGATCTTCTCGCTACTTCAAGTGATTTCCTTCGTTTATGGAGAATCGCTGATGATCATTCCCGTGTTGAGCTCAAATCTTGTCTCAATAGCAATAAGAACAGTGAGTTTTGTGGTCCTCTTACTTCTTTTGATTGGAATGAAGCTGAGCCACGTCGAATTGGAACATCTAGTACTGATACGACTTGTACTATCTGGGACATTGAGCGTGAAGCTGTTGATACTCAGCTTATTGCTCATGATAAGGAAGTTTTTGATATTGCTTGGGGTGGTGTTGGTGTTTTTGCATCTGTTTCAGCTGATGGCTCCGTTAGGGTGTTTGATCTTCGTGATAAGGAACATTCGACGATTATCTATGAGAGCTCCGAGCCTGATACTCCTTTAGTGCGTCTTGGTTGGAACAAACAGGATCCTAGGTACATGGCTACTATTATCATGGACAGTGCTAAAGTTGTGGTGCTTGACATTCGTTTTCCGGCTCTTCCTGTGGTTGAGCTTCAACGACATCAAGCTAGTGTCAATGCCATTGCTTGGGCTCCTCATAGCTCTTGTCACATTTGTACTGCTGGAGATGATTCTCAAGCTTTGATTTGGGATATTTCATCCATGGGACAGCATGTTGAAGGTGGTCTTGACCCTATTCTAGCTTACACTGCTGGTGCTGAGATTGAGCAGCTTCAGTGGTCCTCTTCTCAGCCTGATTGGGTCGCAATTGCTTTCTCTACTAAGCTGCAAATTCTCAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

346

Amino Acids

39.09

Weight (kDa)

4.8

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	135 - 330	1.1e-18	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	139 - 217	5.1e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	140 - 220	7.4e-10	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	148 - 214	1.7e-06	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	149 - 212	1.1e-07	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	149 - 328	3.1e-09	WDHD1 first WD40 domain
WD40_Gbeta	PF25391	150 - 210	1.8e-06	G protein beta WD-40 repeat protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12910 AT3G26640
fragaria_vesca	FvH4_6g54470 FvH4_6g54470 FvH4_6g54470
malus_domestica	MD09G1000600.v1.1 MD09G1142200.v1.1 MD17G1003400.v1.1
prunus_persica	Prupe.3G315600_v2.0.a1
pyrus_communis	pycom09g06240 pycom111g00040 pycom17g00020
rosa_chinensis	RchiOBHm_Chr2g0176751
rosa_laevigata	RLG00000022443
rosa_multiflora	Rmu_co8457233.1_g000001 Rmu_sc0020992.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076190
rosa_rugosa	Rorug02G0598300
rosa_samantha	Rh2AG675800 Rh2BG686900 Rh2DG701100
rosa_wichuraiana	Rw2G055450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	822
AccII	CGCG	1 cut(s)	117
AclWI	GGATC	5 cut(s)	11, 202, 212, 695, 708
AcsI	RAATTY	1 cut(s)	1026
AcuI	CTGAAG	1 cut(s)	953
AfaI	GTAC	4 cut(s)	466, 481, 710, 853
AfiI	CCNNNNNNNGG	1 cut(s)	822
AgsI	TTSAA	4 cut(s)	26, 312, 791, 914
AjiI	CACGTC	1 cut(s)	446
Alw21I	GWGCWC	2 cut(s)	366, 656
Alw26I	GTCTC	2 cut(s)	137, 380
AlwI	GGATC	5 cut(s)	11, 202, 212, 695, 708
Ama87I	CYCGRG	1 cut(s)	152
ApeKI	GCWGC	5 cut(s)	12, 43, 184, 964, 1021
ApoI	RAATTY	1 cut(s)	1026
AspA2I	CCTAGG	1 cut(s)	704
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	2 cut(s)	407, 975
AsuHPI	GGTGA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	407, 975
AvrII	CCTAGG	1 cut(s)	704
BamHI	GGATCC	1 cut(s)	700
BanII	GRGCYC	3 cut(s)	366, 656, 829
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	366, 656
BbvI	GCAGC	5 cut(s)	24, 55, 196, 976, 1008
BccI	CCATC	3 cut(s)	23, 146, 587
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	137, 380
BfaI	CTAG	5 cut(s)	144, 462, 705, 804, 935
BfoI	RGCGCY	1 cut(s)	80
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	5 cut(s)	13, 44, 185, 965, 1022
BlnI	CCTAGG	1 cut(s)	704
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	5 cut(s)	14, 45, 186, 966, 1023
BmcAI	AGTACT	1 cut(s)	466
Bme18I	GGWCC	2 cut(s)	407, 975
BmeT110I	CYCGRG	1 cut(s)	152
BmgBI	CACGTC	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	407, 975
BmiI	GGNNCC	4 cut(s)	34, 598, 702, 828
BmsI	GCATC	2 cut(s)	247, 587
BpiI	GAAGAC	1 cut(s)	263
BpmI	CTGGAG	1 cut(s)	879
Bpu1102I	GCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	855
BsaJI	CCNNGG	3 cut(s)	80, 704, 897
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	822
Bse3DI	GCAATG	2 cut(s)	102, 816
BseDI	CCNNGG	3 cut(s)	80, 704, 897
BseGI	GGATG	2 cut(s)	238, 893
BseLI	CCNNNNNNNGG	1 cut(s)	822
BseMI	GCAATG	2 cut(s)	102, 816
BseMII	CTCAG	4 cut(s)	429, 530, 945, 998
BseRI	GAGGAG	2 cut(s)	140, 819
BseXI	GCAGC	5 cut(s)	24, 55, 196, 976, 1008
BsgI	GTGCAG	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	366, 656
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	767
BslFI	GGGAC	2 cut(s)	503, 915
BslI	CCNNNNNNNGG	1 cut(s)	822
BsmAI	GTCTC	2 cut(s)	137, 380
BsmBI	CGTCTC	1 cut(s)	137
BsmFI	GGGAC	2 cut(s)	503, 915
BsmI	GAATGC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	3 cut(s)	366, 656, 829
Bsp143I	GATC	9 cut(s)	16, 53, 60, 207, 217, 295, 346, 613, 700
Bsp1720I	GCTNAGC	1 cut(s)	438
Bsp19I	CCATGG	2 cut(s)	80, 897
Bsp68I	TCGCGA	1 cut(s)	117
BspCNI	CTCAG	4 cut(s)	430, 529, 946, 997
BspFNI	CGCG	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	4 cut(s)	34, 598, 702, 828
BspPI	GGATC	5 cut(s)	11, 202, 212, 695, 708
BspQI	GCTCTTC	1 cut(s)	777
BsrDI	GCAATG	2 cut(s)	102, 816
BssECI	CCNNGG	3 cut(s)	80, 704, 897
BssMI	GATC	9 cut(s)	16, 53, 60, 207, 217, 295, 346, 613, 700
BssT1I	CCWWGG	3 cut(s)	80, 704, 897
Bst4CI	ACNGT	3 cut(s)	170, 395, 734
Bst6I	CTCTTC	2 cut(s)	777, 985
BstDEI	CTNAG	6 cut(s)	438, 516, 954, 984, 1017, 1031
BstDSI	CCRYGG	2 cut(s)	80, 897
BstF5I	GGATG	2 cut(s)	238, 893
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	9 cut(s)	19, 56, 63, 210, 220, 298, 349, 616, 703
BstMAI	GTCTC	2 cut(s)	137, 380
BstMBI	GATC	9 cut(s)	16, 53, 60, 207, 217, 295, 346, 613, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 114, 944
BstNSI	RCATGY	1 cut(s)	911
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	5 cut(s)	24, 55, 196, 976, 1008
BstV2I	GAAGAC	1 cut(s)	263
BstX2I	RGATCY	3 cut(s)	60, 207, 700
BstYI	RGATCY	3 cut(s)	60, 207, 700
BtgI	CCRYGG	2 cut(s)	80, 897
BtrI	CACGTC	1 cut(s)	446
BtsCI	GGATG	2 cut(s)	238, 893
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	4 cut(s)	400, 739, 942, 977
BtuMI	TCGCGA	1 cut(s)	117
CciI	TCATGA	1 cut(s)	529
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	407, 975
CseI	GACGC	1 cut(s)	668
Csp6I	GTAC	4 cut(s)	465, 480, 709, 852
CviAII	CATG	6 cut(s)	81, 530, 712, 727, 898, 908
CviQI	GTAC	4 cut(s)	465, 480, 709, 852
DdeI	CTNAG	6 cut(s)	438, 516, 954, 984, 1017, 1031
DpnI	GATC	9 cut(s)	18, 55, 62, 209, 219, 297, 348, 615, 702
DpnII	GATC	9 cut(s)	16, 53, 60, 207, 217, 295, 346, 613, 700
Eam1104I	CTCTTC	2 cut(s)	777, 985
EarI	CTCTTC	2 cut(s)	777, 985
Ecl136II	GAGCTC	2 cut(s)	364, 654
Eco130I	CCWWGG	3 cut(s)	80, 704, 897
Eco24I	GRGCYC	3 cut(s)	366, 656, 829
Eco47I	GGWCC	2 cut(s)	407, 975
Eco53kI	GAGCTC	2 cut(s)	364, 654
Eco57I	CTGAAG	1 cut(s)	953
Eco88I	CYCGRG	1 cut(s)	152
EcoICRI	GAGCTC	2 cut(s)	364, 654
EcoT14I	CCWWGG	3 cut(s)	80, 704, 897
EcoT38I	GRGCYC	3 cut(s)	366, 656, 829
ErhI	CCWWGG	3 cut(s)	80, 704, 897
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	6 cut(s)	84, 533, 715, 730, 901, 911
FalI	AAGNNNNNCTT	2 cut(s)	906, 938
FaqI	GGGAC	2 cut(s)	503, 915
FatI	CATG	6 cut(s)	80, 529, 711, 726, 897, 907
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	5 cut(s)	13, 44, 185, 965, 1022
FokI	GGATG	2 cut(s)	225, 880
FriOI	GRGCYC	3 cut(s)	366, 656, 829
Fsp4HI	GCNGC	5 cut(s)	13, 44, 185, 965, 1022
FspBI	CTAG	5 cut(s)	144, 462, 705, 804, 935
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	5 cut(s)	13, 44, 185, 965, 1022
GsuI	CTGGAG	1 cut(s)	879
HaeII	RGCGCY	1 cut(s)	80
HapII	CCGG	1 cut(s)	767
HgaI	GACGC	1 cut(s)	668
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	6 cut(s)	84, 533, 715, 730, 901, 911
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	873
HinfI	GANTC	4 cut(s)	22, 194, 336, 866
HpaII	CCGG	1 cut(s)	767
HphI	GGTGA	1 cut(s)	215
Hpy188I	TCNGA	5 cut(s)	21, 37, 58, 217, 658
Hpy188III	TCNNGA	6 cut(s)	26, 116, 175, 530, 620, 923
Hpy99I	CGWCG	3 cut(s)	117, 450, 640
HpyAV	CCTTC	2 cut(s)	332, 908
HpyCH4III	ACNGT	3 cut(s)	170, 395, 734
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	3 cut(s)	184, 578, 1024
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 114, 944
HpyF3I	CTNAG	6 cut(s)	438, 516, 954, 984, 1017, 1031
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	6 cut(s)	84, 533, 715, 730, 901, 911
HspAI	GCGC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	9 cut(s)	16, 53, 60, 207, 217, 295, 346, 613, 700
LguI	GCTCTTC	1 cut(s)	777
LmnI	GCTCC	4 cut(s)	105, 602, 659, 832
Lsp1109I	GCAGC	5 cut(s)	24, 55, 196, 976, 1008
LweI	GCATC	2 cut(s)	247, 587
MaeI	CTAG	5 cut(s)	144, 462, 705, 804, 935
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	842
MalI	GATC	9 cut(s)	18, 55, 62, 209, 219, 297, 348, 615, 702
MboI	GATC	9 cut(s)	16, 53, 60, 207, 217, 295, 346, 613, 700
MboII	GAAGA	5 cut(s)	268, 290, 608, 764, 972
MfeI	CAATTG	1 cut(s)	1002
MflI	RGATCY	3 cut(s)	60, 207, 700
MhlI	GDGCHC	3 cut(s)	366, 656, 829
MluCI	AATT	4 cut(s)	100, 450, 1002, 1026
MmeI	TCCRAC	1 cut(s)	668
MnlI	CCTC	6 cut(s)	158, 161, 236, 420, 840, 988
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	1 cut(s)	767
MunI	CAATTG	1 cut(s)	1002
Mva1269I	GAATGC	1 cut(s)	287
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	49, 114, 944
NcoI	CCATGG	2 cut(s)	80, 897
NdeII	GATC	9 cut(s)	16, 53, 60, 207, 217, 295, 346, 613, 700
NlaIII	CATG	6 cut(s)	84, 533, 715, 730, 901, 911
NlaIV	GGNNCC	4 cut(s)	34, 598, 702, 828
NmuCI	GTSAC	1 cut(s)	842
NruI	TCGCGA	1 cut(s)	117
NspI	RCATGY	1 cut(s)	911
PaeR7I	CTCGAG	1 cut(s)	152
PagI	TCATGA	1 cut(s)	529
PciSI	GCTCTTC	1 cut(s)	777
PctI	GAATGC	1 cut(s)	287
PfeI	GAWTC	4 cut(s)	22, 194, 336, 866
PflMI	CCANNNNNTGG	1 cut(s)	822
PkrI	GCNGC	5 cut(s)	14, 45, 186, 966, 1023
Psp124BI	GAGCTC	2 cut(s)	366, 656
PspN4I	GGNNCC	4 cut(s)	34, 598, 702, 828
PspPI	GGNCC	2 cut(s)	407, 975
PspXI	VCTCGAGB	1 cut(s)	152
PsrI	GAACNNNNNNTAC	2 cut(s)	448, 480
PsuI	RGATCY	3 cut(s)	60, 207, 700
PvuII	CAGCTG	1 cut(s)	590
RruI	TCGCGA	1 cut(s)	117
RsaI	GTAC	4 cut(s)	466, 481, 710, 853
RsaNI	GTAC	4 cut(s)	465, 480, 709, 852
RseI	CAYNNNNRTG	1 cut(s)	354
SacI	GAGCTC	2 cut(s)	366, 656
SapI	GCTCTTC	1 cut(s)	777
SatI	GCNGC	5 cut(s)	13, 44, 185, 965, 1022
Sau3AI	GATC	9 cut(s)	16, 53, 60, 207, 217, 295, 346, 613, 700
Sau96I	GGNCC	2 cut(s)	407, 975
ScaI	AGTACT	1 cut(s)	466
SduI	GDGCHC	3 cut(s)	366, 656, 829
SfaNI	GCATC	2 cut(s)	247, 587
Sfr274I	CTCGAG	1 cut(s)	152
SinI	GGWCC	2 cut(s)	407, 975
SlaI	CTCGAG	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	152, 870
SmoI	CTYRAG	2 cut(s)	152, 870
Sse9I	AATT	4 cut(s)	100, 450, 1002, 1026
SspMI	CTAG	5 cut(s)	144, 462, 705, 804, 935
SstI	GAGCTC	2 cut(s)	366, 656
StyI	CCWWGG	3 cut(s)	80, 704, 897
TaaI	ACNGT	3 cut(s)	170, 395, 734
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	5 cut(s)	153, 174, 189, 448, 635
TasI	AATT	4 cut(s)	100, 450, 1002, 1026
TatI	WGTACW	3 cut(s)	464, 479, 851
TfiI	GAWTC	4 cut(s)	22, 194, 336, 866
TscAI	CASTG	4 cut(s)	400, 739, 949, 977
TseFI	GTSAC	1 cut(s)	842
TseI	GCWGC	5 cut(s)	12, 43, 184, 964, 1021
Tsp45I	GTSAC	1 cut(s)	842
TspDTI	ATGAA	5 cut(s)	113, 207, 256, 447, 882
TspGWI	ACGGA	2 cut(s)	200, 589
TspRI	CASTG	4 cut(s)	400, 739, 949, 977
Van91I	CCANNNNNTGG	1 cut(s)	822
VpaK11BI	GGWCC	2 cut(s)	407, 975
XapI	RAATTY	1 cut(s)	1026
XceI	RCATGY	1 cut(s)	911
XhoI	CTCGAG	1 cut(s)	152
XmaJI	CCTAGG	1 cut(s)	704
XspI	CTAG	5 cut(s)	144, 462, 705, 804, 935
ZrmI	AGTACT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.