Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009269

Physical Location & Seq

Genomic Coordinates Forward (+)

9793179 .. 9794874

Gene Structure 1696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGTTACGAGCAGCGATCAAATCCAAAATGGTTCTGAAGAGCAATCAAAAAGATCAGAGATTTACACATACGAAGCACCATGGCAGATCTACGCAATGAACTGGAGCATTCGTCGAGACAAGAAGTATCGGCTCGCAATCACAAGCCTCATCGAGCAATATCCGAATCGCGTCGAAATTGTTCAGCTTGATGAATCAAATGGTGAGATTCGTTCAGATCCAAATCTCTGCTTCGAACATCCTTACCCACCAACGAAAACCAGTTTCATACCCGATAAAGAATGTCAAAGACCCGATCTTTTAGCTACTTCTAGTGATTTCCTTCGTTTATGGCGAATCTCTGATGATGAATCTCGTGTTGAGCTTAAGTCTTGTCTTAGTAGTGATAAGAATAGTGAGTTTAGTGGTCCAATCACTTCATTTGATTGGAATGAAGCTGAGCCTAGACGAATTGGTACTTCTAGTATTGATACCACTTGTACTATTTGGGATATAGAGCGTGAAGTTGTTGATACCCAGCTTATTGCTCATGATAAAGAGGTTTATGACATTGCTTGGGGTGGTGTTGGTGTCTTTGCCTCTGTCTCAGAGGATGGTTCCGTTAGAGTGTTTGATCTCCGTGATAAGGAGCATTCGACGATTATCTACGAGAGTGGTGAGCCTAGTACTCCTTTGGTGCGACTTAGTTGGAACAAGCAGGATCCGAGGTATATGGCTACTGTTATCATGGGCAGTGCTAAAATTGTTGTGTTGGATATTCGGTTTCCGGCTCTTCCTGTCGTGGAGCTTCAGCGACATCAGGCTAGTGTCAATGCTATAGCTTGGGCTCCTCATAGCTCTTCCCATATCTGCTCCGCTGGAGATGATTCTCAGGCGTTGATTTGGGATATATCTTCCATGGGACAGCATGTTGAAGGTGGTCTGGATCCGATTCTAGCTTACACAGCCGGCGCTGAGGTTGAGCAGCTTCAGTGGTCATCTTCTCAGCCTGATTGGGTTGCCATTGCCTTCTCTAACAAGCTGCAGATTCTCCGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

346

Amino Acids

39.09

Weight (kDa)

4.74

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	133 - 331	2.4e-19	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	133 - 229	2.1e-08	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	133 - 304	8.9e-11	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	136 - 214	3.6e-07	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	137 - 217	1.3e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	138 - 238	5.9e-11	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12910 AT3G26640
fragaria_vesca	FvH4_6g54470 FvH4_6g54470 FvH4_6g54470
malus_domestica	MD09G1000600.v1.1 MD09G1142200.v1.1 MD17G1003400.v1.1
prunus_persica	Prupe.3G315600_v2.0.a1
pyrus_communis	pycom09g06240 pycom111g00040 pycom17g00020
rosa_chinensis	RchiOBHm_Chr2g0176751
rosa_laevigata	RLG00000022443
rosa_multiflora	Rmu_co8457233.1_g000001 Rmu_sc0020992.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076190
rosa_rugosa	Rorug02G0598300
rosa_samantha	Rh2AG675800 Rh2BG686900 Rh2DG701100
rosa_wichuraiana	Rw2G055450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	171
AciI	CCGC	1 cut(s)	855
AclWI	GGATC	5 cut(s)	212, 695, 708, 920, 933
AcuI	CTGAAG	3 cut(s)	57, 773, 953
AfaI	GTAC	3 cut(s)	457, 481, 667
AfiI	CCNNNNNNNGG	1 cut(s)	625
AflII	CTTAAG	1 cut(s)	365
AgsI	TTSAA	1 cut(s)	914
Alw26I	GTCTC	2 cut(s)	111, 589
AlwI	GGATC	5 cut(s)	212, 695, 708, 920, 933
ApeKI	GCWGC	3 cut(s)	12, 964, 1021
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	953
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	1034
AsuHPI	GGTGA	2 cut(s)	215, 668
AsuII	TTCGAA	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	407
BamHI	GGATCC	2 cut(s)	700, 925
BanII	GRGCYC	1 cut(s)	829
BauI	CACGAG	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	954
BbvI	GCAGC	3 cut(s)	24, 976, 1008
BccI	CCATC	1 cut(s)	587
BcnI	CCSGG	1 cut(s)	1034
BcoDI	GTCTC	2 cut(s)	111, 589
BfaI	CTAG	6 cut(s)	312, 444, 462, 663, 804, 935
BfmI	CTRYAG	2 cut(s)	816, 1022
BfoI	RGCGCY	1 cut(s)	954
BfrI	CTTAAG	1 cut(s)	365
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	3 cut(s)	13, 965, 1022
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	3 cut(s)	14, 966, 1023
BmcAI	AGTACT	1 cut(s)	667
Bme1390I	CCNGG	1 cut(s)	1034
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	4 cut(s)	598, 702, 828, 927
BmrFI	CCNGG	1 cut(s)	1034
BpmI	CTGGAG	2 cut(s)	124, 879
Bpu10I	CCTNAGC	1 cut(s)	954
Bpu1102I	GCTNAGC	1 cut(s)	438
Bpu14I	TTCGAA	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	1034
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	80, 704, 897
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	625
Bse118I	RCCGGY	1 cut(s)	947
Bse1I	ACTGG	2 cut(s)	107, 261
Bse3DI	GCAATG	3 cut(s)	102, 549, 1002
Bse8I	GATNNNNATC	1 cut(s)	222
BseDI	CCNNGG	3 cut(s)	80, 704, 897
BseGI	GGATG	2 cut(s)	238, 598
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	625
BseMI	GCAATG	3 cut(s)	102, 549, 1002
BseMII	CTCAG	5 cut(s)	429, 600, 884, 945, 998
BseNI	ACTGG	2 cut(s)	107, 261
BseRI	GAGGAG	1 cut(s)	819
BseXI	GCAGC	3 cut(s)	24, 976, 1008
BseYI	CCCAGC	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	171
BsiSI	CCGG	3 cut(s)	767, 948, 1033
BslFI	GGGAC	1 cut(s)	915
BslI	CCNNNNNNNGG	1 cut(s)	625
BsmAI	GTCTC	2 cut(s)	111, 589
BsmFI	GGGAC	1 cut(s)	915
BsmI	GAATGC	2 cut(s)	108, 631
Bsp119I	TTCGAA	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	829
Bsp143I	GATC	8 cut(s)	16, 53, 87, 217, 295, 613, 700, 925
Bsp1720I	GCTNAGC	1 cut(s)	438
Bsp19I	CCATGG	2 cut(s)	80, 897
BspACI	CCGC	1 cut(s)	855
BspCNI	CTCAG	5 cut(s)	430, 599, 883, 946, 997
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	4 cut(s)	598, 702, 828, 927
BspMAI	CTGCAG	1 cut(s)	1026
BspPI	GGATC	5 cut(s)	212, 695, 708, 920, 933
BspQI	GCTCTTC	3 cut(s)	33, 777, 844
BspT104I	TTCGAA	1 cut(s)	234
BspTI	CTTAAG	1 cut(s)	365
BsrDI	GCAATG	3 cut(s)	102, 549, 1002
BsrFI	RCCGGY	1 cut(s)	947
BsrI	ACTGG	2 cut(s)	107, 261
BssAI	RCCGGY	1 cut(s)	947
BssECI	CCNNGG	3 cut(s)	80, 704, 897
BssMI	GATC	8 cut(s)	16, 53, 87, 217, 295, 613, 700, 925
BssSI	CACGAG	1 cut(s)	354
BssT1I	CCWWGG	2 cut(s)	80, 897
Bst2BI	CACGAG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	721
Bst6I	CTCTTC	3 cut(s)	33, 777, 844
BstAFI	CTTAAG	1 cut(s)	365
BstBI	TTCGAA	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	135, 949
BstDEI	CTNAG	7 cut(s)	377, 438, 586, 683, 870, 954, 984
BstDSI	CCRYGG	2 cut(s)	80, 897
BstF5I	GGATG	2 cut(s)	238, 598
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	954
BstHHI	GCGC	1 cut(s)	953
BstKTI	GATC	8 cut(s)	19, 56, 90, 220, 298, 616, 703, 928
BstMAI	GTCTC	2 cut(s)	111, 589
BstMBI	GATC	8 cut(s)	16, 53, 87, 217, 295, 613, 700, 925
BstMWI	GCNNNNNNNGC	1 cut(s)	944
BstNSI	RCATGY	1 cut(s)	911
BstSCI	CCNGG	1 cut(s)	1032
BstSFI	CTRYAG	2 cut(s)	816, 1022
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	3 cut(s)	24, 976, 1008
BstX2I	RGATCY	4 cut(s)	87, 217, 700, 925
BstYI	RGATCY	4 cut(s)	87, 217, 700, 925
BtgI	CCRYGG	2 cut(s)	80, 897
BtsCI	GGATG	2 cut(s)	238, 598
BtsI	GCAGTG	1 cut(s)	739
BtsIMutI	CAGTG	2 cut(s)	739, 977
Cac8I	GCNNGC	2 cut(s)	135, 949
CciI	TCATGA	1 cut(s)	529
CfoI	GCGC	1 cut(s)	953
Cfr10I	RCCGGY	1 cut(s)	947
Cfr13I	GGNCC	1 cut(s)	407
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	3 cut(s)	456, 480, 666
CviAII	CATG	5 cut(s)	81, 530, 727, 898, 908
CviQI	GTAC	3 cut(s)	456, 480, 666
DdeI	CTNAG	7 cut(s)	377, 438, 586, 683, 870, 954, 984
DpnI	GATC	8 cut(s)	18, 55, 89, 219, 297, 615, 702, 927
DpnII	GATC	8 cut(s)	16, 53, 87, 217, 295, 613, 700, 925
Eam1104I	CTCTTC	3 cut(s)	33, 777, 844
EarI	CTCTTC	3 cut(s)	33, 777, 844
Eco130I	CCWWGG	2 cut(s)	80, 897
Eco24I	GRGCYC	1 cut(s)	829
Eco47I	GGWCC	1 cut(s)	407
Eco57I	CTGAAG	3 cut(s)	57, 773, 953
EcoT14I	CCWWGG	2 cut(s)	80, 897
EcoT38I	GRGCYC	1 cut(s)	829
ErhI	CCWWGG	2 cut(s)	80, 897
FaeI	CATG	5 cut(s)	84, 533, 730, 901, 911
FaqI	GGGAC	1 cut(s)	915
FatI	CATG	5 cut(s)	80, 529, 726, 897, 907
Fnu4HI	GCNGC	3 cut(s)	13, 965, 1022
FokI	GGATG	2 cut(s)	225, 605
FriOI	GRGCYC	1 cut(s)	829
Fsp4HI	GCNGC	3 cut(s)	13, 965, 1022
FspBI	CTAG	6 cut(s)	312, 444, 462, 663, 804, 935
GlaI	GCGC	1 cut(s)	952
GluI	GCNGC	3 cut(s)	13, 965, 1022
GsaI	CCCAGC	1 cut(s)	520
GsuI	CTGGAG	2 cut(s)	124, 879
HaeII	RGCGCY	1 cut(s)	954
HapII	CCGG	3 cut(s)	767, 948, 1033
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	953
Hin1II	CATG	5 cut(s)	84, 533, 730, 901, 911
Hin6I	GCGC	1 cut(s)	951
HinP1I	GCGC	1 cut(s)	951
HinfI	GANTC	8 cut(s)	166, 194, 208, 336, 350, 866, 931, 1027
HpaII	CCGG	3 cut(s)	767, 948, 1033
HphI	GGTGA	2 cut(s)	215, 668
Hpy188I	TCNGA	9 cut(s)	37, 58, 165, 217, 343, 589, 705, 930, 1040
Hpy188III	TCNNGA	3 cut(s)	116, 530, 923
Hpy99I	CGWCG	3 cut(s)	117, 176, 640
HpyAV	CCTTC	3 cut(s)	332, 908, 1018
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4V	TGCA	1 cut(s)	1024
HpyF10VI	GCNNNNNNNGC	1 cut(s)	944
HpyF3I	CTNAG	7 cut(s)	377, 438, 586, 683, 870, 954, 984
Hsp92II	CATG	5 cut(s)	84, 533, 730, 901, 911
HspAI	GCGC	1 cut(s)	951
KroI	GCCGGC	1 cut(s)	947
KroNI	GCCGGC	1 cut(s)	949
Kzo9I	GATC	8 cut(s)	16, 53, 87, 217, 295, 613, 700, 925
LguI	GCTCTTC	3 cut(s)	33, 777, 844
LmnI	GCTCC	5 cut(s)	105, 628, 784, 832, 857
Lsp1109I	GCAGC	3 cut(s)	24, 976, 1008
MaeI	CTAG	6 cut(s)	312, 444, 462, 663, 804, 935
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	8 cut(s)	18, 55, 89, 219, 297, 615, 702, 927
MboI	GATC	8 cut(s)	16, 53, 87, 217, 295, 613, 700, 925
MboII	GAAGA	5 cut(s)	50, 764, 831, 885, 972
MflI	RGATCY	4 cut(s)	87, 217, 700, 925
MhlI	GDGCHC	1 cut(s)	829
MluCI	AATT	3 cut(s)	177, 450, 741
MmeI	TCCRAC	2 cut(s)	668, 732
MnlI	CCTC	7 cut(s)	158, 532, 583, 589, 699, 840, 949
MroNI	GCCGGC	1 cut(s)	947
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	857
MspCI	CTTAAG	1 cut(s)	365
MspI	CCGG	3 cut(s)	767, 948, 1033
MspR9I	CCNGG	1 cut(s)	1034
Mva1269I	GAATGC	2 cut(s)	108, 631
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	944
NaeI	GCCGGC	1 cut(s)	949
NciI	CCSGG	1 cut(s)	1034
NcoI	CCATGG	2 cut(s)	80, 897
NdeII	GATC	8 cut(s)	16, 53, 87, 217, 295, 613, 700, 925
NgoMIV	GCCGGC	1 cut(s)	947
NlaIII	CATG	5 cut(s)	84, 533, 730, 901, 911
NlaIV	GGNNCC	4 cut(s)	598, 702, 828, 927
NspI	RCATGY	1 cut(s)	911
NspV	TTCGAA	1 cut(s)	234
PagI	TCATGA	1 cut(s)	529
PciSI	GCTCTTC	3 cut(s)	33, 777, 844
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PctI	GAATGC	2 cut(s)	108, 631
PdiI	GCCGGC	1 cut(s)	949
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	8 cut(s)	166, 194, 208, 336, 350, 866, 931, 1027
PkrI	GCNGC	3 cut(s)	14, 966, 1023
PspFI	CCCAGC	1 cut(s)	516
PspN4I	GGNNCC	4 cut(s)	598, 702, 828, 927
PspPI	GGNCC	1 cut(s)	407
PstI	CTGCAG	1 cut(s)	1026
PsuI	RGATCY	4 cut(s)	87, 217, 700, 925
RsaI	GTAC	3 cut(s)	457, 481, 667
RsaNI	GTAC	3 cut(s)	456, 480, 666
SapI	GCTCTTC	3 cut(s)	33, 777, 844
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	3 cut(s)	13, 965, 1022
Sau3AI	GATC	8 cut(s)	16, 53, 87, 217, 295, 613, 700, 925
Sau96I	GGNCC	1 cut(s)	407
ScaI	AGTACT	1 cut(s)	667
ScrFI	CCNGG	1 cut(s)	1034
SduI	GDGCHC	1 cut(s)	829
SfcI	CTRYAG	2 cut(s)	816, 1022
SfuI	TTCGAA	1 cut(s)	234
SinI	GGWCC	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	3 cut(s)	177, 450, 741
SsiI	CCGC	1 cut(s)	855
SspMI	CTAG	6 cut(s)	312, 444, 462, 663, 804, 935
StyD4I	CCNGG	1 cut(s)	1032
StyI	CCWWGG	2 cut(s)	80, 897
TaaI	ACNGT	1 cut(s)	721
TaqI	TCGA	5 cut(s)	115, 153, 174, 234, 635
TasI	AATT	3 cut(s)	177, 450, 741
TatI	WGTACW	2 cut(s)	479, 665
TfiI	GAWTC	8 cut(s)	166, 194, 208, 336, 350, 866, 931, 1027
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	2 cut(s)	739, 977
TseI	GCWGC	3 cut(s)	12, 964, 1021
TspDTI	ATGAA	6 cut(s)	113, 207, 256, 363, 408, 447
TspGWI	ACGGA	2 cut(s)	589, 608
TspRI	CASTG	2 cut(s)	739, 977
Vha464I	CTTAAG	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	407
XceI	RCATGY	1 cut(s)	911
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	6 cut(s)	312, 444, 462, 663, 804, 935
ZrmI	AGTACT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.