Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8457233.1

Orthogroup ID

OG0009269

Physical Location & Seq

Genomic Coordinates Reverse (-)

929 .. 1744

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8457233.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ctgtgcttcgagcacccgtatccgccgaccaagaccatattcatcccggacaaggagtgccagaagccggacctgctggccacatcgagcgatttcctgcgcgtgtggagcatctcggaagactcctcctgcgtggagctcaagtcggtcctgaacggcaacaagaactccgagttctgcgggccgctcacctcgttcgattggaacgaggcggagccgaagcgcatcggcacctcctccatcgacaccacctgcaccatctgggacatcgagcgtgaggccgtcgacacccagctcatcgcccacgacaaggaggtctacgacatcgcctggggcggcgtcggtgtcttcgcctccgtctccgccgacggctccgtgagagtgttcgacctgcgtgacaaggagcattccaccatcatctacgagagctccgagcccgacacccccttggtccgcctgggatggaacaagcaggaccccaggtacatggccaccatcatcatggatagcgccaaggtcgtcgtcctcgacatccgcttccctacgcttccggtcgtcgagttgcagaggcaccaggccagcgtcaacgccgttgcttgggccccgcacagctcttgccacatctgcactgccggggatgactcacaggccctcatctgggacctctcctccatgggccagcccgtcgagggtggcctcgatcccattctggcctacactgccggggcagagattgagcagctgcagtggtcttcttctcagcccgattgggttgcaattgctttctccaccaagcttcagatactcagggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

271

Amino Acids

30.06

Weight (kDa)

4.59

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12910 AT3G26640
fragaria_vesca	FvH4_6g54470 FvH4_6g54470 FvH4_6g54470
malus_domestica	MD09G1000600.v1.1 MD09G1142200.v1.1 MD17G1003400.v1.1
prunus_persica	Prupe.3G315600_v2.0.a1
pyrus_communis	pycom09g06240 pycom111g00040 pycom17g00020
rosa_chinensis	RchiOBHm_Chr2g0176751
rosa_laevigata	RLG00000022443
rosa_multiflora	Rmu_co8457233.1_g000001 Rmu_sc0020992.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076190
rosa_rugosa	Rorug02G0598300
rosa_samantha	Rh2AG675800 Rh2BG686900 Rh2DG701100
rosa_wichuraiana	Rw2G055450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	260
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc36I	ACCTGC	3 cut(s)	81, 260, 399
AccB1I	GGYRCC	2 cut(s)	230, 570
AccBSI	CCGCTC	1 cut(s)	187
AccI	GTMKAC	2 cut(s)	285, 318
AccII	CGCG	1 cut(s)	102
AciI	CCGC	9 cut(s)	23, 180, 185, 212, 336, 363, 454, 535, 605
AclWI	GGATC	1 cut(s)	695
AcoI	YGGCCR	2 cut(s)	78, 489
AcuI	CTGAAG	1 cut(s)	782
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	7 cut(s)	52, 67, 310, 597, 657, 658, 689
AjnI	CCWGG	4 cut(s)	329, 456, 479, 573
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	6 cut(s)	139, 295, 429, 612, 742, 796
AluI	AGCT	6 cut(s)	139, 295, 429, 612, 742, 796
Alw21I	GWGCWC	3 cut(s)	15, 141, 431
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	1 cut(s)	695
ApaI	GGGCCC	1 cut(s)	604
ApeKI	GCWGC	2 cut(s)	739, 742
AspLEI	GCGC	3 cut(s)	102, 225, 512
AsuC2I	CCSGG	3 cut(s)	47, 634, 724
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	5 cut(s)	70, 148, 451, 475, 661
BaeGI	GKGCMC	1 cut(s)	604
BalI	TGGCCA	2 cut(s)	80, 491
BanI	GGYRCC	2 cut(s)	230, 570
BanII	GRGCYC	4 cut(s)	141, 431, 438, 604
BbsI	GAAGAC	3 cut(s)	126, 340, 744
Bbv12I	GWGCWC	3 cut(s)	15, 141, 431
BbvI	GCAGC	2 cut(s)	729, 751
BccI	CCATC	5 cut(s)	248, 266, 422, 456, 503
BceAI	ACGGC	4 cut(s)	172, 266, 385, 575
BcgI	CGANNNNNNTGC	2 cut(s)	755, 789
BciT130I	CCWGG	4 cut(s)	331, 458, 481, 575
BciVI	GTATCC	1 cut(s)	30
BcnI	CCSGG	3 cut(s)	47, 634, 724
BcoDI	GTCTC	1 cut(s)	364
BfmI	CTRYAG	1 cut(s)	743
BfoI	RGCGCY	1 cut(s)	513
BfuAI	ACCTGC	3 cut(s)	81, 260, 399
BfuI	GTATCC	1 cut(s)	30
BisI	GCNGC	4 cut(s)	185, 337, 740, 743
BlsI	GCNGC	4 cut(s)	186, 338, 741, 744
Bme1390I	CCNGG	7 cut(s)	47, 331, 458, 481, 575, 634, 724
Bme18I	GGWCC	5 cut(s)	70, 148, 451, 475, 661
BmiI	GGNNCC	8 cut(s)	216, 232, 373, 477, 572, 602, 603, 662
BmrFI	CCNGG	7 cut(s)	47, 331, 458, 481, 575, 634, 724
BmsI	GCATC	2 cut(s)	120, 234
BpiI	GAAGAC	3 cut(s)	126, 340, 744
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	3 cut(s)	47, 634, 724
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	8 cut(s)	330, 447, 457, 479, 513, 633, 672, 723
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	8 cut(s)	128, 152, 158, 182, 413, 443, 653, 683
Bsc4I	CCNNNNNNNGG	7 cut(s)	52, 67, 310, 597, 657, 658, 689
BseBI	CCWGG	4 cut(s)	331, 458, 481, 575
BseDI	CCNNGG	8 cut(s)	330, 447, 457, 479, 513, 633, 672, 723
BseGI	GGATG	4 cut(s)	42, 467, 531, 643
BseLI	CCNNNNNNNGG	7 cut(s)	52, 67, 310, 597, 657, 658, 689
BseMII	CTCAG	1 cut(s)	773
BseRI	GAGGAG	3 cut(s)	115, 226, 658
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	2 cut(s)	729, 751
BseYI	CCCAGC	1 cut(s)	291
BsgI	GTGCAG	2 cut(s)	238, 610
Bsh1236I	CGCG	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	555
BshNI	GGYRCC	2 cut(s)	230, 570
BsiEI	CGRYCG	1 cut(s)	555
BsiHKAI	GWGCWC	3 cut(s)	15, 141, 431
BsiSI	CCGG	5 cut(s)	47, 68, 551, 633, 723
BslFI	GGGAC	2 cut(s)	278, 674
BslI	CCNNNNNNNGG	7 cut(s)	52, 67, 310, 597, 657, 658, 689
BsmAI	GTCTC	1 cut(s)	364
BsmBI	CGTCTC	1 cut(s)	364
BsmFI	GGGAC	2 cut(s)	278, 674
BsmI	GAATGC	1 cut(s)	406
Bsp120I	GGGCCC	1 cut(s)	600
Bsp1286I	GDGCHC	5 cut(s)	15, 141, 431, 438, 604
Bsp143I	GATC	1 cut(s)	700
Bsp19I	CCATGG	1 cut(s)	672
BspACI	CCGC	9 cut(s)	23, 180, 185, 212, 336, 363, 454, 535, 605
BspCNI	CTCAG	1 cut(s)	772
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	8 cut(s)	216, 232, 373, 477, 572, 602, 603, 662
BspMAI	CTGCAG	1 cut(s)	747
BspMI	ACCTGC	3 cut(s)	81, 260, 399
BspPI	GGATC	1 cut(s)	695
BspT107I	GGYRCC	2 cut(s)	230, 570
BsrBI	CCGCTC	1 cut(s)	187
BssECI	CCNNGG	8 cut(s)	330, 447, 457, 479, 513, 633, 672, 723
BssMI	GATC	1 cut(s)	700
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	3 cut(s)	447, 513, 672
Bst2UI	CCWGG	4 cut(s)	331, 458, 481, 575
BstACI	GRCGYC	1 cut(s)	339
BstC8I	GCNNGC	4 cut(s)	78, 182, 580, 680
BstDEI	CTNAG	2 cut(s)	759, 806
BstDSI	CCRYGG	1 cut(s)	672
BstF5I	GGATG	4 cut(s)	42, 467, 531, 643
BstFNI	CGCG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	3 cut(s)	102, 225, 512
BstKTI	GATC	1 cut(s)	703
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	700
BstMCI	CGRYCG	1 cut(s)	555
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 108, 624, 719
BstNI	CCWGG	4 cut(s)	331, 458, 481, 575
BstSCI	CCNGG	7 cut(s)	45, 329, 456, 479, 573, 632, 722
BstSFI	CTRYAG	1 cut(s)	743
BstSLI	GKGCMC	1 cut(s)	604
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	729, 751
BstV2I	GAAGAC	3 cut(s)	126, 340, 744
BstXI	CCANNNNNNTGG	2 cut(s)	487, 502
BsuI	GTATCC	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	672
BtgZI	GCGATG	2 cut(s)	283, 310
BtsCI	GGATG	4 cut(s)	42, 467, 531, 643
BtsI	GCAGTG	3 cut(s)	627, 717, 752
BtsIMutI	CAGTG	3 cut(s)	627, 717, 752
BveI	ACCTGC	3 cut(s)	81, 260, 399
Cac8I	GCNNGC	4 cut(s)	78, 182, 580, 680
CfoI	GCGC	3 cut(s)	102, 225, 512
CseI	GACGC	2 cut(s)	328, 571
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	3 cut(s)	487, 502, 673
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	2 cut(s)	759, 806
DpnI	GATC	1 cut(s)	702
DpnII	GATC	1 cut(s)	700
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	2 cut(s)	78, 489
EciI	GGCGGA	4 cut(s)	12, 227, 352, 443
Ecl136II	GAGCTC	2 cut(s)	139, 429
Eco130I	CCWWGG	3 cut(s)	447, 513, 672
Eco24I	GRGCYC	4 cut(s)	141, 431, 438, 604
Eco47I	GGWCC	5 cut(s)	70, 148, 451, 475, 661
Eco53kI	GAGCTC	2 cut(s)	139, 429
Eco57I	CTGAAG	1 cut(s)	782
EcoICRI	GAGCTC	2 cut(s)	139, 429
EcoO109I	RGGNCCY	4 cut(s)	475, 601, 649, 661
EcoRII	CCWGG	4 cut(s)	329, 456, 479, 573
EcoT14I	CCWWGG	3 cut(s)	447, 513, 672
EcoT38I	GRGCYC	4 cut(s)	141, 431, 438, 604
ErhI	CCWWGG	3 cut(s)	447, 513, 672
Esp3I	CGTCTC	1 cut(s)	364
FaeI	CATG	3 cut(s)	490, 505, 676
FaiI	YATR	5 cut(s)	38, 488, 503, 674, 814
FaqI	GGGAC	2 cut(s)	278, 674
FatI	CATG	3 cut(s)	486, 501, 672
FauI	CCCGC	2 cut(s)	173, 612
FblI	GTMKAC	2 cut(s)	285, 318
Fnu4HI	GCNGC	4 cut(s)	185, 337, 740, 743
FokI	GGATG	4 cut(s)	29, 474, 518, 650
FriOI	GRGCYC	4 cut(s)	141, 431, 438, 604
Fsp4HI	GCNGC	4 cut(s)	185, 337, 740, 743
GlaI	GCGC	3 cut(s)	101, 224, 511
GluI	GCNGC	4 cut(s)	185, 337, 740, 743
GsaI	CCCAGC	1 cut(s)	295
HaeII	RGCGCY	1 cut(s)	513
HapII	CCGG	5 cut(s)	47, 68, 551, 633, 723
HgaI	GACGC	2 cut(s)	328, 571
HhaI	GCGC	3 cut(s)	102, 225, 512
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	490, 505, 676
Hin6I	GCGC	3 cut(s)	100, 223, 510
HinP1I	GCGC	3 cut(s)	100, 223, 510
HincII	GTYRAC	2 cut(s)	286, 586
HindII	GTYRAC	2 cut(s)	286, 586
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	2 cut(s)	122, 641
HpaII	CCGG	5 cut(s)	47, 68, 551, 633, 723
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	286, 319, 586
Hpy188I	TCNGA	4 cut(s)	118, 172, 433, 801
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	3 cut(s)	286, 319, 586
Hpy99I	CGWCG	6 cut(s)	287, 344, 371, 524, 560, 689
HpyCH4V	TGCA	5 cut(s)	255, 565, 627, 745, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 108, 624, 719
HpyF3I	CTNAG	2 cut(s)	759, 806
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	490, 505, 676
HspAI	GCGC	3 cut(s)	100, 223, 510
Kzo9I	GATC	1 cut(s)	700
LmnI	GCTCC	6 cut(s)	108, 136, 214, 377, 403, 434
Lsp1109I	GCAGC	2 cut(s)	729, 751
LweI	GCATC	2 cut(s)	120, 234
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	1 cut(s)	702
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	1 cut(s)	700
MboII	GAAGA	4 cut(s)	131, 340, 744, 747
MfeI	CAATTG	1 cut(s)	777
MhlI	GDGCHC	5 cut(s)	15, 141, 431, 438, 604
MlsI	TGGCCA	2 cut(s)	80, 491
MluCI	AATT	1 cut(s)	777
MluNI	TGGCCA	2 cut(s)	80, 491
MlyI	GAGTC	2 cut(s)	116, 635
Mox20I	TGGCCA	2 cut(s)	80, 491
MscI	TGGCCA	2 cut(s)	80, 491
MslI	CAYNNNNRTG	1 cut(s)	500
Msp20I	TGGCCA	2 cut(s)	80, 491
MspA1I	CMGCKG	1 cut(s)	742
MspI	CCGG	5 cut(s)	47, 68, 551, 633, 723
MspR9I	CCNGG	7 cut(s)	47, 331, 458, 481, 575, 634, 724
MunI	CAATTG	1 cut(s)	777
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	4 cut(s)	331, 458, 481, 575
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	4 cut(s)	73, 108, 624, 719
NciI	CCSGG	3 cut(s)	47, 634, 724
NcoI	CCATGG	1 cut(s)	672
NdeII	GATC	1 cut(s)	700
NlaIII	CATG	3 cut(s)	490, 505, 676
NlaIV	GGNNCC	8 cut(s)	216, 232, 373, 477, 572, 602, 603, 662
NmuCI	GTSAC	1 cut(s)	395
PaqCI	CACCTGC	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	3 cut(s)	204, 429, 525
PctI	GAATGC	1 cut(s)	406
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	4 cut(s)	186, 338, 741, 744
PleI	GAGTC	2 cut(s)	116, 635
PpsI	GAGTC	2 cut(s)	116, 635
PpuMI	RGGWCCY	2 cut(s)	475, 661
Psp124BI	GAGCTC	2 cut(s)	141, 431
Psp5II	RGGWCCY	2 cut(s)	475, 661
Psp6I	CCWGG	4 cut(s)	329, 456, 479, 573
PspFI	CCCAGC	1 cut(s)	291
PspGI	CCWGG	4 cut(s)	329, 456, 479, 573
PspN4I	GGNNCC	8 cut(s)	216, 232, 373, 477, 572, 602, 603, 662
PspOMI	GGGCCC	1 cut(s)	600
PspPPI	RGGWCCY	2 cut(s)	475, 661
PstI	CTGCAG	1 cut(s)	747
PvuII	CAGCTG	1 cut(s)	742
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
RseI	CAYNNNNRTG	1 cut(s)	500
SacI	GAGCTC	2 cut(s)	141, 431
SalI	GTCGAC	1 cut(s)	284
SatI	GCNGC	4 cut(s)	185, 337, 740, 743
Sau3AI	GATC	1 cut(s)	700
SchI	GAGTC	2 cut(s)	116, 635
ScrFI	CCNGG	7 cut(s)	47, 331, 458, 481, 575, 634, 724
SduI	GDGCHC	5 cut(s)	15, 141, 431, 438, 604
SfaNI	GCATC	2 cut(s)	120, 234
SfcI	CTRYAG	1 cut(s)	743
SinI	GGWCC	5 cut(s)	70, 148, 451, 475, 661
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	777
SsiI	CCGC	9 cut(s)	23, 180, 185, 212, 336, 363, 454, 535, 605
SstI	GAGCTC	2 cut(s)	141, 431
StyD4I	CCNGG	7 cut(s)	45, 329, 456, 479, 573, 632, 722
StyI	CCWWGG	3 cut(s)	447, 513, 672
TaqII	GACCGA	1 cut(s)	136
TasI	AATT	1 cut(s)	777
TauI	GCSGC	2 cut(s)	187, 339
TscAI	CASTG	3 cut(s)	634, 724, 752
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	2 cut(s)	739, 742
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	2 cut(s)	346, 364
TspRI	CASTG	3 cut(s)	634, 724, 752
VpaK11BI	GGWCC	5 cut(s)	70, 148, 451, 475, 661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmiI	GTMKAC	2 cut(s)	285, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.