Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009269

Physical Location & Seq

Genomic Coordinates Reverse (-)

71906646 .. 71908067

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0598300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGTATGCTCCAGCAGACATGTTTGCTCATCTAGGTTCCACAATAGGTGCCTTGGTGTTTGTGTGGACAATCTTTCAACAATTTTTTCCTTACCAAGTTCGAAACCACATCGAAAAATACTCACAGAGATTGGTGGGTTATGTCTATCCTTACATCCAAATTACCTTTAATGAGTTGACAGGAGAGCGTCTGATGCGCAGTGAAGCCTATTCCGCCATTGAGAACTACTTGAGCTCCAAGTCTTCCACACAAGCTAAGCGGCTCAAGGGTGACATCAAGAACAATCAGTCTCTTGTTCTGAGCATGGATGACCATGAAGAAGTTGCTGATGAGTTTAAAGGAGTCCAAGTCTGGTGGGCTTCTGGTAAGAACATATCAAAATCTCAGACATTTTCTTACACCCCAGTTAATGATGAGAAAAGGTACTACAAGCTCACTTTCCACAAAAGAAAGAGGGATCTCATAATTGGGCCTTACTTGGCTCATGTTTTGAAAGAGGGTAATGCTATAAAAGTGAGGAACAGGCAAAGGAAGCTTTATACTAATAATGGGTCACATTGGAGCCATGTGGTTTTTGAGCACCCAGCAACATTTCAGACACTAGCTATGGAGCCAGAGAAGAAGAAGGACATCATTGAGGACTTGATGGCATTTAGCAAAGCTGAAGAGTTCTATACAAGAATTGGGAGAGCTTGGAAAAGAGGGTATCTACTTTATGGCCCTCCAGGTACTGGGAAATCCACTATGATTGCTGCCATGGCCAATCTCTTGGGGTATGATCTCTATGATCTTGAATTGACTGCAGTCAAGGACAACACTGAGCTGAGGAGGCTGCTGATCGAAACATCAAGCAAGTCGATCATCGTAATTGAAGACATTGATTGCTCACTTGATCTCACAGGCCAAAGGAGGAAGCAGAGAAAGGACAGAGGGGATGATCAGGAAGAGAAGGATCCAAGGGAGAAGGTTCCTAAAGAAGAAAGGGAAAGCAAGCCTAGTCAGGTCACTCTTTCTGGGCTTCTGAATTTCATTGATGGGTTGTGGTCAGCTTGTAGAGGAGAGAGGCTTATAGTATTCACAACTAATCATGTTGAAAAACTTGATGCAGCATTGATTCGAAAGGGAAGGATGGACAAGCATATAGAATTGTCATATTGTAACTTTGAATCATTCAAGGTGTTGGCTAGGAACTACCTCAAGCTTGAATCACACACTCTGTTTCCCACAATCTGTGATTTGCTGGCTGAAGTTAATATGACTCCAGCTGATGTAGCAGAGCATTTGATGCCCAAGACACTTTCTGGGGATGTTGAAATCTGCCTGAAGAATTTGATCCAAGCTCTTGAGGATGAGAAAGAGAAGAAACCATCAACTCAAGTGGAAGCAAAAGATCAGGACAATGAGTCATCTGATAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009649 GO:0009718 GO:0009791 GO:0009812 GO:0009813 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0042440 GO:0042752 GO:0043153 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0097159 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

473

Amino Acids

54.5

Weight (kDa)

7.64

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	29 - 121	3.4e-27	Domain associated at C-terminal with AAA
AAA	PF00004	236 - 384	1e-16	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	386 - 456	4.6e-30	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12910 AT3G26640
fragaria_vesca	FvH4_6g54470 FvH4_6g54470 FvH4_6g54470
malus_domestica	MD09G1000600.v1.1 MD09G1142200.v1.1 MD17G1003400.v1.1
prunus_persica	Prupe.3G315600_v2.0.a1
pyrus_communis	pycom09g06240 pycom111g00040 pycom17g00020
rosa_chinensis	RchiOBHm_Chr2g0176751
rosa_laevigata	RLG00000022443
rosa_multiflora	Rmu_co8457233.1_g000001 Rmu_sc0020992.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076190
rosa_rugosa	Rorug02G0598300
rosa_samantha	Rh2AG675800 Rh2BG686900 Rh2DG701100
rosa_wichuraiana	Rw2G055450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	731
AciI	CCGC	2 cut(s)	213, 259
AclWI	GGATC	4 cut(s)	465, 947, 960, 1327
AcoI	YGGCCR	1 cut(s)	759
AcsI	RAATTY	2 cut(s)	1024, 1327
AcuI	CTGAAG	3 cut(s)	684, 1266, 1343
AfaI	GTAC	2 cut(s)	425, 730
AfiI	CCNNNNNNNGG	1 cut(s)	731
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	9 cut(s)	77, 493, 794, 872, 1094, 1166, 1174, 1205, 1313
AhdI	GACNNNNNGTC	1 cut(s)	1402
AjnI	CCWGG	1 cut(s)	724
Alw21I	GWGCWC	2 cut(s)	236, 582
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	4 cut(s)	465, 947, 960, 1327
AlwNI	CAGNNNCTG	1 cut(s)	731
AoxI	GGCC	4 cut(s)	470, 718, 759, 901
ApeKI	GCWGC	3 cut(s)	752, 832, 1106
ApoI	RAATTY	2 cut(s)	1024, 1327
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	470, 719
AsuHPI	GGTGA	1 cut(s)	281
AsuII	TTCGAA	2 cut(s)	100, 1117
BalI	TGGCCA	1 cut(s)	761
BamHI	GGATCC	1 cut(s)	952
BanI	GGYRCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	236
BbsI	GAAGAC	2 cut(s)	234, 879
Bbv12I	GWGCWC	2 cut(s)	236, 582
BbvCI	CCTCAGC	1 cut(s)	824
BbvI	GCAGC	3 cut(s)	739, 819, 1118
BccI	CCATC	4 cut(s)	640, 1028, 1123, 1375
BciT130I	CCWGG	1 cut(s)	726
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	4 cut(s)	32, 602, 996, 1185
BfmI	CTRYAG	1 cut(s)	801
BisI	GCNGC	4 cut(s)	260, 753, 833, 1107
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	4 cut(s)	261, 754, 834, 1108
Bme1390I	CCNGG	1 cut(s)	726
BmeRI	GACNNNNNGTC	1 cut(s)	1402
BmgT120I	GGNCC	2 cut(s)	470, 719
BmiI	GGNNCC	6 cut(s)	37, 49, 563, 612, 954, 969
BmrFI	CCNGG	1 cut(s)	726
BmrI	ACTGGG	2 cut(s)	398, 741
BmsI	GCATC	3 cut(s)	183, 1093, 1275
BmuI	ACTGGG	2 cut(s)	398, 741
BoxI	GACNNNNGTC	1 cut(s)	803
BpiI	GAAGAC	2 cut(s)	234, 879
BpmI	CTGGAG	2 cut(s)	708, 1245
Bpu10I	CCTNAGC	1 cut(s)	824
Bpu1102I	GCTNAGC	1 cut(s)	255
Bpu14I	TTCGAA	2 cut(s)	100, 1117
BpuEI	CTTGAG	5 cut(s)	248, 250, 1181, 1359, 1364
BsaJI	CCNNGG	3 cut(s)	51, 756, 956
BsaXI	ACNNNNNCTCC	4 cut(s)	218, 248, 333, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse1I	ACTGG	2 cut(s)	404, 736
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	3 cut(s)	51, 756, 956
BseGI	GGATG	6 cut(s)	153, 313, 940, 1134, 1312, 1354
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMII	CTCAG	4 cut(s)	290, 398, 810, 815
BseNI	ACTGG	2 cut(s)	404, 736
BseRI	GAGGAG	2 cut(s)	841, 1071
BseXI	GCAGC	3 cut(s)	739, 819, 1118
BseYI	CCCAGC	1 cut(s)	583
BshFI	GGCC	4 cut(s)	472, 720, 761, 903
BshNI	GGYRCC	1 cut(s)	47
BsiHKAI	GWGCWC	2 cut(s)	236, 582
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmAI	GTCTC	1 cut(s)	294
BsnI	GGCC	4 cut(s)	472, 720, 761, 903
Bsp119I	TTCGAA	2 cut(s)	100, 1117
Bsp1286I	GDGCHC	2 cut(s)	236, 582
Bsp1720I	GCTNAGC	1 cut(s)	255
Bsp19I	CCATGG	1 cut(s)	756
BspACI	CCGC	2 cut(s)	213, 259
BspANI	GGCC	4 cut(s)	472, 720, 761, 903
BspCNI	CTCAG	4 cut(s)	291, 397, 811, 816
BspLI	GGNNCC	6 cut(s)	37, 49, 563, 612, 954, 969
BspMAI	CTGCAG	1 cut(s)	805
BspPI	GGATC	4 cut(s)	465, 947, 960, 1327
BspT104I	TTCGAA	2 cut(s)	100, 1117
BspT107I	GGYRCC	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	404, 736
BssECI	CCNNGG	3 cut(s)	51, 756, 956
BssT1I	CCWWGG	3 cut(s)	51, 756, 956
Bst2UI	CCWGG	1 cut(s)	726
Bst6I	CTCTTC	2 cut(s)	660, 939
BstAPI	GCANNNNNTGC	1 cut(s)	1285
BstBI	TTCGAA	2 cut(s)	100, 1117
BstC8I	GCNNGC	2 cut(s)	992, 1242
BstDEI	CTNAG	5 cut(s)	255, 299, 384, 819, 824
BstDSI	CCRYGG	1 cut(s)	756
BstF5I	GGATG	6 cut(s)	153, 313, 940, 1134, 1312, 1354
BstHHI	GCGC	1 cut(s)	198
BstMAI	GTCTC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	7 cut(s)	193, 212, 532, 758, 829, 1271, 1285
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	1 cut(s)	22
BstPAI	GACNNNNGTC	1 cut(s)	803
BstSCI	CCNGG	1 cut(s)	724
BstSFI	CTRYAG	1 cut(s)	801
BstV1I	GCAGC	3 cut(s)	739, 819, 1118
BstV2I	GAAGAC	2 cut(s)	234, 879
BstX2I	RGATCY	2 cut(s)	457, 952
BstXI	CCANNNNNNTGG	1 cut(s)	769
BstYI	RGATCY	2 cut(s)	457, 952
BsuRI	GGCC	4 cut(s)	472, 720, 761, 903
BtgI	CCRYGG	1 cut(s)	756
BtsCI	GGATG	6 cut(s)	153, 313, 940, 1134, 1312, 1354
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	205, 816
Cac8I	GCNNGC	2 cut(s)	992, 1242
CaiI	CAGNNNCTG	1 cut(s)	731
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	2 cut(s)	470, 719
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	424, 729
CspCI	CAANNNNNGTGG	6 cut(s)	335, 370, 730, 765, 1359, 1394
CviAII	CATG	7 cut(s)	19, 304, 314, 485, 566, 757, 1088
CviQI	GTAC	2 cut(s)	424, 729
DdeI	CTNAG	5 cut(s)	255, 299, 384, 819, 824
DraI	TTTAAA	1 cut(s)	337
DriI	GACNNNNNGTC	1 cut(s)	1402
EaeI	YGGCCR	1 cut(s)	759
Eam1104I	CTCTTC	2 cut(s)	660, 939
Eam1105I	GACNNNNNGTC	1 cut(s)	1402
EarI	CTCTTC	2 cut(s)	660, 939
EciI	GGCGGA	1 cut(s)	202
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	3 cut(s)	51, 756, 956
Eco24I	GRGCYC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	3 cut(s)	684, 1266, 1343
EcoICRI	GAGCTC	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	724
EcoT14I	CCWWGG	3 cut(s)	51, 756, 956
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	3 cut(s)	51, 756, 956
FaeI	CATG	7 cut(s)	22, 307, 317, 488, 569, 760, 1091
FatI	CATG	7 cut(s)	18, 303, 313, 484, 565, 756, 1087
FbaI	TGATCA	1 cut(s)	937
Fnu4HI	GCNGC	4 cut(s)	260, 753, 833, 1107
FokI	GGATG	6 cut(s)	140, 320, 947, 1141, 1319, 1361
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	4 cut(s)	260, 753, 833, 1107
FspBI	CTAG	4 cut(s)	32, 602, 996, 1185
FspI	TGCGCA	1 cut(s)	197
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	4 cut(s)	260, 753, 833, 1107
GsaI	CCCAGC	1 cut(s)	587
GsuI	CTGGAG	2 cut(s)	708, 1245
HaeIII	GGCC	4 cut(s)	472, 720, 761, 903
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	7 cut(s)	22, 307, 317, 488, 569, 760, 1091
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HindIII	AAGCTT	2 cut(s)	533, 1199
HinfI	GANTC	6 cut(s)	342, 1114, 1166, 1205, 1258, 1403
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	2 cut(s)	66, 177
Hpy188I	TCNGA	6 cut(s)	192, 300, 387, 597, 1023, 1411
Hpy188III	TCNNGA	5 cut(s)	277, 791, 941, 1343, 1394
Hpy8I	GTNNAC	2 cut(s)	66, 177
HpyAV	CCTTC	4 cut(s)	619, 943, 958, 1119
HpyCH4V	TGCA	2 cut(s)	803, 1106
HpyF10VI	GCNNNNNNNGC	7 cut(s)	193, 212, 532, 758, 829, 1271, 1285
HpyF3I	CTNAG	5 cut(s)	255, 299, 384, 819, 824
Hsp92II	CATG	7 cut(s)	22, 307, 317, 488, 569, 760, 1091
HspAI	GCGC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	937
LmnI	GCTCC	4 cut(s)	13, 239, 561, 610
Lsp1109I	GCAGC	3 cut(s)	739, 819, 1118
LweI	GCATC	3 cut(s)	183, 1093, 1275
MaeI	CTAG	4 cut(s)	32, 602, 996, 1185
MaeIII	GTNAC	4 cut(s)	269, 552, 1003, 1157
MflI	RGATCY	2 cut(s)	457, 952
MhlI	GDGCHC	2 cut(s)	236, 582
MlsI	TGGCCA	1 cut(s)	761
MluCI	AATT	9 cut(s)	80, 159, 465, 681, 794, 867, 1024, 1145, 1327
MluNI	TGGCCA	1 cut(s)	761
MlyI	GAGTC	3 cut(s)	351, 1252, 1412
Mox20I	TGGCCA	1 cut(s)	761
MscI	TGGCCA	1 cut(s)	761
MseI	TTAA	4 cut(s)	168, 336, 408, 1251
Msp20I	TGGCCA	1 cut(s)	761
MspA1I	CMGCKG	1 cut(s)	1265
MspR9I	CCNGG	1 cut(s)	726
MvaI	CCWGG	1 cut(s)	726
MwoI	GCNNNNNNNGC	7 cut(s)	193, 212, 532, 758, 829, 1271, 1285
NcoI	CCATGG	1 cut(s)	756
NlaIII	CATG	7 cut(s)	22, 307, 317, 488, 569, 760, 1091
NlaIV	GGNNCC	6 cut(s)	37, 49, 563, 612, 954, 969
NmuCI	GTSAC	3 cut(s)	269, 552, 1003
NsbI	TGCGCA	1 cut(s)	197
NspI	RCATGY	1 cut(s)	22
NspV	TTCGAA	2 cut(s)	100, 1117
PciI	ACATGT	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	1114, 1166, 1205
PflMI	CCANNNNNTGG	1 cut(s)	731
PkrI	GCNGC	4 cut(s)	261, 754, 834, 1108
PleI	GAGTC	3 cut(s)	350, 1252, 1411
PpsI	GAGTC	3 cut(s)	350, 1252, 1411
PscI	ACATGT	1 cut(s)	18
PshAI	GACNNNNGTC	1 cut(s)	803
Psp124BI	GAGCTC	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	724
PspFI	CCCAGC	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	6 cut(s)	37, 49, 563, 612, 954, 969
PspPI	GGNCC	2 cut(s)	470, 719
PstI	CTGCAG	1 cut(s)	805
PstNI	CAGNNNCTG	1 cut(s)	731
PsuI	RGATCY	2 cut(s)	457, 952
PvuII	CAGCTG	1 cut(s)	1265
RsaI	GTAC	2 cut(s)	425, 730
RsaNI	GTAC	2 cut(s)	424, 729
SacI	GAGCTC	1 cut(s)	236
SaqAI	TTAA	4 cut(s)	168, 336, 408, 1251
SatI	GCNGC	4 cut(s)	260, 753, 833, 1107
Sau96I	GGNCC	2 cut(s)	470, 719
SchI	GAGTC	3 cut(s)	351, 1252, 1412
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	2 cut(s)	236, 582
SfaNI	GCATC	3 cut(s)	183, 1093, 1275
SfcI	CTRYAG	1 cut(s)	801
SfuI	TTCGAA	2 cut(s)	100, 1117
SmlI	CTYRAG	5 cut(s)	229, 263, 1196, 1343, 1374
SmoI	CTYRAG	5 cut(s)	229, 263, 1196, 1343, 1374
Sse9I	AATT	9 cut(s)	80, 159, 465, 681, 794, 867, 1024, 1145, 1327
SsiI	CCGC	2 cut(s)	213, 259
SspMI	CTAG	4 cut(s)	32, 602, 996, 1185
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	724
StyI	CCWWGG	3 cut(s)	51, 756, 956
TaqI	TCGA	5 cut(s)	100, 111, 840, 857, 1117
TasI	AATT	9 cut(s)	80, 159, 465, 681, 794, 867, 1024, 1145, 1327
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	3 cut(s)	1114, 1166, 1205
Tru1I	TTAA	4 cut(s)	168, 336, 408, 1251
Tru9I	TTAA	4 cut(s)	168, 336, 408, 1251
TscAI	CASTG	2 cut(s)	205, 823
TseFI	GTSAC	3 cut(s)	269, 552, 1003
TseI	GCWGC	3 cut(s)	752, 832, 1106
Tsp45I	GTSAC	3 cut(s)	269, 552, 1003
TspDTI	ATGAA	2 cut(s)	330, 1018
TspRI	CASTG	2 cut(s)	205, 823
Van91I	CCANNNNNTGG	1 cut(s)	731
XapI	RAATTY	2 cut(s)	1024, 1327
XceI	RCATGY	1 cut(s)	22
XspI	CTAG	4 cut(s)	32, 602, 996, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.