AT1G13410

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016702
Physical Location & Seq
Forward (+)
4601235 .. 4603635
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13410.1

Sequence Viewer

Length: 1425 bp
ATGATTACGTCGCTCCGAGACTCGTCGCTGCTTGTTGCCGAATCACGAGAATTGATTACGCACGCCAAGTGTTCGACAGAATCTCTCAACCAAATGTTTCTGTTTGGAATGCTATGTTTAATGGGAGTGATAGCATCGGCGAATAAGGTGTTTTGTGAGATGGTTGAGAAAAATGTAGTTCTTTGGACTTCGATGATCAATGGGTATCTTTTGAATAAGGACTTAGTCTCTGCTCGACGCTATTTTGATTTGTCGCCTGAGAGAGATATTGTGTTGTGGAACACTATGATATCTGGTTATATTGAAATGGGGAATATGTTAGAGGCTAGGAGTCTTTTTGATCAAATGCCTTGTAGGGATGTCATGTCGTGGAATACGGTTTTAGAGGGTTATGCAAATATTGGAGATATGGAAGCATGTGAAAGGGTTTTTGATGATATGCCAGAGAGAAATGTGTTCTCTTGGAATGGTTTGATCAAGGGATATGCTCAAAATGGGCGGGTTTCTGAAGTGTTGGGTTCTTTTAAGAGAATGGTAGATGAAGGGAGTGTTGTTCCTAACGATGCAACAATGACTTTAGTTTTATCCGCTTGTGCAAAGTTAGGAGCTTTTGATTTCGGGAAATGGGTACATAAGTATGGAGAAACTCTTGGTTACAATAAGGTAGATGTTAATGTTAAGAATGCTTTGATTGATATGTATGGAAAATGCGGAGCTATAGAGATAGCTATGGAAGTCTTCAAAGGCATAAAGAGAAGAGATTTGATAAGTTGGAATACCATGATCAACGGTTTAGCTGCACATGGACATGGAACTGAGGCCTTAAATTTATTCCATGAGATGAAAAATTCCGGAATTAGTCCGGACAAGGTAACATTCGTCGGTGTTTTATGTGCCTGTAAACACATGGGTTTGGTTGAAGATGGCTTGGCTTATTTCAATTCCATGTTTACTGATTTCTCAATAATGCCTGAGATTGAGCATTGCGGTTGTGTAGTGGATTTACTATCACGGGCTGGATTTTTAACACAAGCTGTTGAGTTTATAAACAAAATGCCGGTAAAAGCGGATGCTGTTATATGGGCTACTCTTCTTGGAGCTTCAAAGGTTTATAAGAAGGTGGACATTGGCGAAGTTGCGCTTGAAGAGTTGATCAAGCTTGAACCAAGAAACCCGGCTAATTTCGTTATGCTCTCAAACATATATGGAGATGCAGGAAGATTTGATGATGCTGCAAGGCTAAAAGTTGCTATGAGAGACACAGGGTTTAAGAAAGAAGCAGGTGTTAGCTGGATTGAGACCGATGATGGTTTAGTGAAGTTTTATTCTTCGGGAGAGAAGCATCCTCGAACAGAGGAATTACAGAGGATCTTGAGAGAACTGAAGAGCTTCAACATCCTTCGTGACGAAGAACATTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

474

Amino Acids

53.17

Weight (kDa)

5.39

Isoelectric Point (pI)

37.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 88 - 121 4.6e-07 PPR repeat family
PPR PF01535 91 - 120 4.6e-07 PPR repeat
PPR_2 PF13041 119 - 152 8.9e-07 PPR repeat family
PPR_2 PF13041 150 - 200 3.1e-08 PPR repeat family
PPR PF01535 153 - 182 1.7e-06 PPR repeat
PPR_2 PF13041 254 - 300 8.2e-14 PPR repeat family
PPR PF01535 256 - 286 1.3e-08 PPR repeat
E_motif PF20431 371 - 433 1.4e-17 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016702)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13410
fragaria_vesca FvH4_4g27250 FvH4_4g27250 FvH4_4g27250
malus_domestica MD15G1390900.v1.1
prunus_persica Prupe.1G312300_v2.0.a1
pyrus_communis pycom15g35000
rosa_chinensis RchiOBHm_Chr4g0435031
rosa_laevigata RLG00000006626
rosa_multiflora Rmu_sc0000400.1_g000012
rosa_roxburghii Rroxscaffold_5G00376240
rosa_rugosa Rorug04G0281900
rosa_samantha Rh4BG345300
rosa_wichuraiana Rw4G029410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1046, 1113
AarI CACCTGC 1 cut(s) 1271
Acc36I ACCTGC 1 cut(s) 1271
AccIII TCCGGA 2 cut(s) 851, 862
AciI CCGC 5 cut(s) 499, 588, 711, 987, 1067
AclWI GGATC 1 cut(s) 1376
AcsI RAATTY 2 cut(s) 826, 847
AcuI CTGAAG 2 cut(s) 528, 1403
AfaI GTAC 1 cut(s) 630
AgsI TTSAA 9 cut(s) 214, 305, 742, 920, 940, 1104, 1145, 1163, 1393
AluBI AGCT 9 cut(s) 608, 716, 728, 797, 1034, 1100, 1159, 1290, 1389
AluI AGCT 9 cut(s) 608, 716, 728, 797, 1034, 1100, 1159, 1290, 1389
Alw26I GTCTC 4 cut(s) 12, 232, 1251, 1292
AlwI GGATC 1 cut(s) 1376
Aor13HI TCCGGA 2 cut(s) 851, 862
AoxI GGCC 1 cut(s) 819
ApeKI GCWGC 3 cut(s) 28, 797, 1232
ApoI RAATTY 2 cut(s) 826, 847
Asp700I GAANNNNTTC 1 cut(s) 1388
AspLEI GCGC 1 cut(s) 1141
AsuC2I CCSGG 1 cut(s) 1175
BaeI ACNNNNGTAYC 2 cut(s) 620, 653
BauI CACGAG 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 730
BbvI GCAGC 3 cut(s) 15, 784, 1219
BccI CCATC 3 cut(s) 154, 917, 1301
BclI TGATCA 5 cut(s) 195, 340, 474, 783, 1152
BcnI CCSGG 1 cut(s) 1175
BcoDI GTCTC 4 cut(s) 12, 232, 1251, 1292
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 717
BfuAI ACCTGC 1 cut(s) 1271
BisI GCNGC 3 cut(s) 29, 798, 1233
BlsI GCNGC 3 cut(s) 30, 799, 1234
Bme1390I CCNGG 1 cut(s) 1175
BmrFI CCNGG 1 cut(s) 1175
BmsI GCATC 6 cut(s) 143, 553, 1060, 1201, 1219, 1351
BpiI GAAGAC 1 cut(s) 730
BpuEI CTTGAG 1 cut(s) 1393
BpuMI CCSGG 1 cut(s) 1175
BsaI GGTCTC 1 cut(s) 1292
BsaWI WCCGGW 2 cut(s) 851, 862
Bse118I RCCGGY 1 cut(s) 1057
Bse3DI GCAATG 1 cut(s) 982
BseAI TCCGGA 2 cut(s) 851, 862
BseGI GGATG 4 cut(s) 364, 1075, 1342, 1395
BseMI GCAATG 1 cut(s) 982
BseMII CTCAG 3 cut(s) 249, 807, 963
BseXI GCAGC 3 cut(s) 15, 784, 1219
BsgI GTGCAG 1 cut(s) 783
BshFI GGCC 1 cut(s) 821
BsiSI CCGG 4 cut(s) 852, 863, 1058, 1175
BsmAI GTCTC 4 cut(s) 12, 232, 1251, 1292
BsmI GAATGC 2 cut(s) 114, 688
BsnI GGCC 1 cut(s) 821
Bso31I GGTCTC 1 cut(s) 1292
Bsp13I TCCGGA 2 cut(s) 851, 862
Bsp143I GATC 6 cut(s) 195, 340, 474, 783, 1152, 1368
BspACI CCGC 5 cut(s) 499, 588, 711, 987, 1067
BspANI GGCC 1 cut(s) 821
BspCNI CTCAG 3 cut(s) 250, 808, 964
BspEI TCCGGA 2 cut(s) 851, 862
BspMI ACCTGC 1 cut(s) 1271
BspPI GGATC 1 cut(s) 1376
BspQI GCTCTTC 1 cut(s) 1379
BspTNI GGTCTC 1 cut(s) 1292
BsrDI GCAATG 1 cut(s) 982
BsrFI RCCGGY 1 cut(s) 1057
BssAI RCCGGY 1 cut(s) 1057
BssMI GATC 6 cut(s) 195, 340, 474, 783, 1152, 1368
BssSI CACGAG 1 cut(s) 45
Bst2BI CACGAG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 379, 791
Bst6I CTCTTC 4 cut(s) 751, 1095, 1140, 1379
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 4 cut(s) 223, 258, 816, 972
BstF5I GGATG 4 cut(s) 364, 1075, 1342, 1395
BstHHI GCGC 1 cut(s) 1141
BstKTI GATC 6 cut(s) 198, 343, 477, 786, 1155, 1371
BstMAI GTCTC 4 cut(s) 12, 232, 1251, 1292
BstMBI GATC 6 cut(s) 195, 340, 474, 783, 1152, 1368
BstNSI RCATGY 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 1173
BstSFI CTRYAG 1 cut(s) 717
BstV1I GCAGC 3 cut(s) 15, 784, 1219
BstV2I GAAGAC 1 cut(s) 730
BstX2I RGATCY 1 cut(s) 1368
BstYI RGATCY 1 cut(s) 1368
BsuRI GGCC 1 cut(s) 821
BtsCI GGATG 4 cut(s) 364, 1075, 1342, 1395
BveI ACCTGC 1 cut(s) 1271
Cac8I GCNNGC 1 cut(s) 63
CfoI GCGC 1 cut(s) 1141
Cfr10I RCCGGY 1 cut(s) 1057
CseI GACGC 1 cut(s) 246
Csp6I GTAC 1 cut(s) 629
CviAII CATG 8 cut(s) 364, 417, 781, 803, 809, 836, 907, 946
CviQI GTAC 1 cut(s) 629
DdeI CTNAG 4 cut(s) 223, 258, 816, 972
DpnI GATC 6 cut(s) 197, 342, 476, 785, 1154, 1370
DpnII GATC 6 cut(s) 195, 340, 474, 783, 1152, 1368
Eam1104I CTCTTC 4 cut(s) 751, 1095, 1140, 1379
EarI CTCTTC 4 cut(s) 751, 1095, 1140, 1379
Eco147I AGGCCT 1 cut(s) 821
Eco31I GGTCTC 1 cut(s) 1292
Eco32I GATATC 1 cut(s) 291
Eco57I CTGAAG 2 cut(s) 528, 1403
EcoRV GATATC 1 cut(s) 291
FaeI CATG 8 cut(s) 367, 420, 784, 806, 812, 839, 910, 949
FalI AAGNNNNNCTT 2 cut(s) 1125, 1157
FatI CATG 8 cut(s) 363, 416, 780, 802, 808, 835, 906, 945
FauI CCCGC 1 cut(s) 492
FbaI TGATCA 5 cut(s) 195, 340, 474, 783, 1152
Fnu4HI GCNGC 3 cut(s) 29, 798, 1233
FokI GGATG 4 cut(s) 371, 1082, 1329, 1382
Fsp4HI GCNGC 3 cut(s) 29, 798, 1233
FspBI CTAG 1 cut(s) 327
GlaI GCGC 1 cut(s) 1140
GluI GCNGC 3 cut(s) 29, 798, 1233
HaeIII GGCC 1 cut(s) 821
HapII CCGG 4 cut(s) 852, 863, 1058, 1175
HgaI GACGC 1 cut(s) 246
HhaI GCGC 1 cut(s) 1141
Hin1II CATG 8 cut(s) 367, 420, 784, 806, 812, 839, 910, 949
Hin6I GCGC 1 cut(s) 1139
HinP1I GCGC 1 cut(s) 1139
HindIII AAGCTT 1 cut(s) 1157
HinfI GANTC 4 cut(s) 20, 41, 80, 331
HpaII CCGG 4 cut(s) 852, 863, 1058, 1175
Hpy166II GTNNAC 3 cut(s) 902, 951, 1123
Hpy188I TCNGA 2 cut(s) 17, 508
Hpy188III TCNNGA 7 cut(s) 45, 619, 852, 863, 1332, 1372, 1403
Hpy8I GTNNAC 3 cut(s) 902, 951, 1123
Hpy99I CGWCG 4 cut(s) 13, 28, 240, 884
HpyAV CCTTC 3 cut(s) 536, 1111, 1409
HpyCH4III ACNGT 2 cut(s) 379, 791
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 6 cut(s) 395, 566, 596, 800, 1214, 1235
HpyF3I CTNAG 4 cut(s) 223, 258, 816, 972
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 8 cut(s) 367, 420, 784, 806, 812, 839, 910, 949
HspAI GCGC 1 cut(s) 1139
Kpn2I TCCGGA 2 cut(s) 851, 862
Ksp22I TGATCA 5 cut(s) 195, 340, 474, 783, 1152
Kzo9I GATC 6 cut(s) 195, 340, 474, 783, 1152, 1368
LguI GCTCTTC 1 cut(s) 1379
LmnI GCTCC 4 cut(s) 18, 605, 713, 1097
Lsp1109I GCAGC 3 cut(s) 15, 784, 1219
LweI GCATC 6 cut(s) 143, 553, 1060, 1201, 1219, 1351
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 3 cut(s) 653, 871, 1403
MalI GATC 6 cut(s) 197, 342, 476, 785, 1154, 1370
MboI GATC 6 cut(s) 195, 340, 474, 783, 1152, 1368
MboII GAAGA 9 cut(s) 730, 768, 932, 1082, 1157, 1230, 1320, 1396, 1421
MflI RGATCY 1 cut(s) 1368
MluCI AATT 7 cut(s) 50, 826, 847, 855, 940, 1180, 1358
MlyI GAGTC 2 cut(s) 14, 340
MmeI TCCRAC 1 cut(s) 752
MnlI CCTC 6 cut(s) 316, 379, 811, 1348, 1356, 1359
MroI TCCGGA 2 cut(s) 851, 862
MroXI GAANNNNTTC 1 cut(s) 1388
MseI TTAA 7 cut(s) 119, 525, 672, 678, 824, 1025, 1269
MslI CAYNNNNRTG 2 cut(s) 636, 807
MspI CCGG 4 cut(s) 852, 863, 1058, 1175
MspR9I CCNGG 1 cut(s) 1175
Mva1269I GAATGC 2 cut(s) 114, 688
NciI CCSGG 1 cut(s) 1175
NdeII GATC 6 cut(s) 195, 340, 474, 783, 1152, 1368
NlaIII CATG 8 cut(s) 367, 420, 784, 806, 812, 839, 910, 949
NmuCI GTSAC 1 cut(s) 1403
NspI RCATGY 1 cut(s) 420
PaqCI CACCTGC 1 cut(s) 1271
PceI AGGCCT 1 cut(s) 821
PciSI GCTCTTC 1 cut(s) 1379
PctI GAATGC 2 cut(s) 114, 688
PdmI GAANNNNTTC 1 cut(s) 1388
PfeI GAWTC 2 cut(s) 41, 80
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 3 cut(s) 30, 799, 1234
PleI GAGTC 2 cut(s) 14, 339
PpsI GAGTC 2 cut(s) 14, 339
PsiI TTATAA 2 cut(s) 1046, 1113
PsuI RGATCY 1 cut(s) 1368
PsyI GACNNNGTC 1 cut(s) 224
RsaI GTAC 1 cut(s) 630
RsaNI GTAC 1 cut(s) 629
RseI CAYNNNNRTG 2 cut(s) 636, 807
SapI GCTCTTC 1 cut(s) 1379
SaqAI TTAA 7 cut(s) 119, 525, 672, 678, 824, 1025, 1269
SatI GCNGC 3 cut(s) 29, 798, 1233
Sau3AI GATC 6 cut(s) 195, 340, 474, 783, 1152, 1368
SchI GAGTC 2 cut(s) 14, 340
ScrFI CCNGG 1 cut(s) 1175
SfaNI GCATC 6 cut(s) 143, 553, 1060, 1201, 1219, 1351
SfcI CTRYAG 1 cut(s) 717
SmiMI CAYNNNNRTG 2 cut(s) 636, 807
SmlI CTYRAG 1 cut(s) 1372
SmoI CTYRAG 1 cut(s) 1372
Sse9I AATT 7 cut(s) 50, 826, 847, 855, 940, 1180, 1358
SseBI AGGCCT 1 cut(s) 821
SsiI CCGC 5 cut(s) 499, 588, 711, 987, 1067
SspI AATATT 1 cut(s) 400
SspMI CTAG 1 cut(s) 327
StuI AGGCCT 1 cut(s) 821
StyD4I CCNGG 1 cut(s) 1173
TaaI ACNGT 2 cut(s) 379, 791
TaiI ACGT 1 cut(s) 11
TaqI TCGA 4 cut(s) 74, 191, 235, 1348
TaqII GACCGA 1 cut(s) 1316
TasI AATT 7 cut(s) 50, 826, 847, 855, 940, 1180, 1358
TfiI GAWTC 2 cut(s) 41, 80
Tru1I TTAA 7 cut(s) 119, 525, 672, 678, 824, 1025, 1269
Tru9I TTAA 7 cut(s) 119, 525, 672, 678, 824, 1025, 1269
TseFI GTSAC 1 cut(s) 1403
TseI GCWGC 3 cut(s) 28, 797, 1232
Tsp45I GTSAC 1 cut(s) 1403
TspDTI ATGAA 2 cut(s) 555, 857
Tth111I GACNNNGTC 1 cut(s) 224
XapI RAATTY 2 cut(s) 826, 847
XceI RCATGY 1 cut(s) 420
XmnI GAANNNNTTC 1 cut(s) 1388
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.