FvH4_4g27250

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016702
Physical Location & Seq
Reverse (-)
28323463 .. 28326619
3157 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27250.t2

Sequence Viewer

Length: 1617 bp
ATGGCTTATGCCCACCAGGTGTTCGATCAAATTCCTGAACCAAATTTTGCTCTATGGAATGCGCTGTTGAGAGGGTATGCGAGGAATGAGGGTCATAGGGAAGTTGTGGCTTTGTTTTGTAGGATGAAGAACATGGACATAATGCCGAATTGCTATACGTTCCCCGTTGTGATTAAATGTTGTGGGAGGTTGGGTAGGTTGGTGGAAGGTGAAGAGGTGCATTGTGTTGCGATAAAATGTGGGTTTAGAGCGAACCCCTTTGTGGGGACGACGCTGATCGAAATGTATGCGGCTGGGGGAGTGATTGGAGCTGCTTATAAGGCGTTTGGTGAGATGTTTGAGAGAAATGTGATTGCTTGGACTTCCATGATTAATGGCTACATTTTGTGTGGTGATATGGTTTCTGCGCAGCGGCTTTTTGATTTGGCACCAGAACGAGATATCGTGTTGTGGAACACTATGGTTTCTGGTTATATTGAGCTGGGGGATATGAGAACAGCTAGAAAGCTTTTTGATAAGATGCCAAGGCGTGATGTTATTTGTTGGAATACCGTATTGAATGGTTATGCAAGTAATCAAGACATTGAGGCTTGTGAGGATTTGTTTGAGAAGATGCCTGAGAGGAATGTTTTCTCATGGAATGGGTTGATGGGAGGCTATGCACGCAAGGGACGTTTCATTGCAGTTCTGGGATCTTTCAAGCAGATGCTTACTGAGAGTAAAGTGCTTCCTAATGATGCCACATTAACGACTGTGCTGTCAGCTTGTGCGAGATTAGGAGCTCTTGATTTGGGCAAGTGGGTGCATGTATATGCCGAGAATATAGGGTACAAGAGAAATGTATATGTTGGGAATGCGTTGATTGACATGTATGCAAAATGTGGTGGTGTTGATAATGCAGTCGATGTCTTCAAAAACATGGAGATGAAAGATCTAATTACTTGGAACACTATAATTTGTGGCTTAGCAACACATGGACGTGGGGGTGATGCTTTAAAGTTGTTTTCACAGATGAAGAGTTGTAAATTGAAACCAGATGGGATCACCTTCATAGGTATTCTGTGCTCTTGTACACATCTAGGATTAGTAGAAGATGGCCTGTCATATTTCCAATCAATGGTTAGTGACTATTCAATTGTGCCTCAAATTGAGCATTATGGTTGTATGGTTGATCTGCTTGGGCGAGCTGGTCTCTTGGAACAGGCAGTGGAGTTTGTGAGGCAGATGCCGATAGAAGCAGATGTTGTCATTTGGACTGCCTTACTTGGGGCATGTCGAATATACAAGAACATTGAGTTGGCTGAGTTGGCTCTCGAACGGCTCATTGAACTTGAACCGAAAAACCCTGCAAACTATGTCATGCTTTCAAATATATATGGTGATCTTGGGAGATGGAAAGATGTCGCAAGATTAAAAGTTGCAGTTAGGGATACAGGGTATAAAAAATTCCCTGGTGTTAGCTCTATAGAGGCCGATCATGGTGTGGTTGAGTTCTGTTCCTTGGATAAGAGGCATCAGGAGACTCAGGATATATATGAAACTCTGGAGGGATTGACCAAACTACTAAGATCTTCTGGATATGTACCAGACATTCTGGAGCTTGGGCATGGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

539

Amino Acids

60.16

Weight (kDa)

5.8

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 14 - 62 2.1e-09 PPR repeat family
PPR_2 PF13041 146 - 178 1.3e-06 PPR repeat family
PPR PF01535 149 - 178 2.5e-06 PPR repeat
PPR_2 PF13041 177 - 210 1.2e-06 PPR repeat family
PPR PF01535 181 - 210 8.1e-06 PPR repeat
PPR_2 PF13041 208 - 258 1.7e-06 PPR repeat family
PPR_2 PF13041 311 - 357 1.6e-10 PPR repeat family
PPR PF01535 313 - 341 9.1e-06 PPR repeat
E_motif PF20431 428 - 490 8.8e-23 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016702)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13410
fragaria_vesca FvH4_4g27250 FvH4_4g27250 FvH4_4g27250
malus_domestica MD15G1390900.v1.1
prunus_persica Prupe.1G312300_v2.0.a1
pyrus_communis pycom15g35000
rosa_chinensis RchiOBHm_Chr4g0435031
rosa_laevigata RLG00000006626
rosa_multiflora Rmu_sc0000400.1_g000012
rosa_roxburghii Rroxscaffold_5G00376240
rosa_rugosa Rorug04G0281900
rosa_samantha Rh4BG345300
rosa_wichuraiana Rw4G029410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AasI GACNNNNNNGTC 1 cut(s) 757
Acc16I TGCGCA 1 cut(s) 408
AccB1I GGYRCC 1 cut(s) 427
AccB7I CCANNNNNTGG 1 cut(s) 1117
AciI CCGC 2 cut(s) 290, 412
AclWI GGATC 2 cut(s) 700, 1049
AcsI RAATTY 3 cut(s) 30, 43, 1445
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 3 cut(s) 830, 1072, 1584
AfiI CCNNNNNNNGG 5 cut(s) 262, 263, 264, 1117, 1266
AflIII ACRYGT 1 cut(s) 867
AgsI TTSAA 8 cut(s) 559, 700, 913, 1030, 1134, 1328, 1334, 1368
AjiI CACGTC 1 cut(s) 980
AjnI CCWGG 2 cut(s) 15, 1450
AjuI GAANNNNNNNTTGG 2 cut(s) 1280, 1312
AluBI AGCT 9 cut(s) 311, 481, 500, 508, 764, 782, 1187, 1461, 1600
AluI AGCT 9 cut(s) 311, 481, 500, 508, 764, 782, 1187, 1461, 1600
Alw21I GWGCWC 2 cut(s) 784, 1067
Alw26I GTCTC 3 cut(s) 1196, 1514, 1605
AlwI GGATC 2 cut(s) 700, 1049
AoxI GGCC 2 cut(s) 1096, 1470
ApeKI GCWGC 2 cut(s) 311, 409
ApoI RAATTY 3 cut(s) 30, 43, 1445
AseI ATTAAT 1 cut(s) 372
Asp700I GAANNNNTTC 1 cut(s) 629
AspLEI GCGC 2 cut(s) 64, 409
AsuHPI GGTGA 6 cut(s) 221, 341, 404, 998, 1036, 1391
BanI GGYRCC 1 cut(s) 427
BanII GRGCYC 1 cut(s) 784
BbsI GAAGAC 1 cut(s) 901
Bbv12I GWGCWC 2 cut(s) 784, 1067
BbvI GCAGC 2 cut(s) 298, 421
BccI CCATC 4 cut(s) 643, 1031, 1088, 1386
BceAI ACGGC 1 cut(s) 1334
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 2 cut(s) 17, 1452
BciVI GTATCC 1 cut(s) 1423
BcoDI GTCTC 3 cut(s) 1196, 1514, 1605
BfaI CTAG 3 cut(s) 501, 1079, 1615
BfmI CTRYAG 1 cut(s) 1464
BfuI GTATCC 1 cut(s) 1423
BglII AGATCT 2 cut(s) 931, 1568
BisI GCNGC 4 cut(s) 291, 312, 410, 413
BlpI GCTNAGC 1 cut(s) 964
BlsI GCNGC 4 cut(s) 292, 313, 411, 414
Bme1390I CCNGG 2 cut(s) 17, 1452
BmgBI CACGTC 1 cut(s) 980
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 2 cut(s) 17, 1452
BmsI GCATC 7 cut(s) 510, 603, 696, 727, 979, 1215, 1522
BpiI GAAGAC 1 cut(s) 901
BplI GAGNNNNNCTC 2 cut(s) 1176, 1208
BpmI CTGGAG 2 cut(s) 1565, 1616
Bpu1102I GCTNAGC 1 cut(s) 964
BsaI GGTCTC 1 cut(s) 1196
BsaJI CCNNGG 3 cut(s) 524, 1450, 1500
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 5 cut(s) 262, 263, 264, 1117, 1266
Bse3DI GCAATG 1 cut(s) 678
BseBI CCWGG 2 cut(s) 17, 1452
BseDI CCNNGG 3 cut(s) 524, 1450, 1500
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 5 cut(s) 262, 263, 264, 1117, 1266
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 4 cut(s) 609, 705, 1293, 1538
BseXI GCAGC 2 cut(s) 298, 421
BseYI CCCAGC 2 cut(s) 293, 481
BshFI GGCC 2 cut(s) 1098, 1472
BshNI GGYRCC 1 cut(s) 427
BsiHKAI GWGCWC 2 cut(s) 784, 1067
BslFI GGGAC 2 cut(s) 280, 684
BslI CCNNNNNNNGG 5 cut(s) 262, 263, 264, 1117, 1266
BsmAI GTCTC 3 cut(s) 1196, 1514, 1605
BsmFI GGGAC 2 cut(s) 280, 684
BsmI GAATGC 2 cut(s) 64, 859
BsnI GGCC 2 cut(s) 1098, 1472
Bso31I GGTCTC 1 cut(s) 1196
Bsp1286I GDGCHC 2 cut(s) 784, 1067
Bsp1407I TGTACA 1 cut(s) 1070
Bsp143I GATC 9 cut(s) 25, 276, 692, 931, 1041, 1171, 1381, 1474, 1568
Bsp1720I GCTNAGC 1 cut(s) 964
BspACI CCGC 2 cut(s) 290, 412
BspANI GGCC 2 cut(s) 1098, 1472
BspCNI CTCAG 4 cut(s) 610, 706, 1294, 1537
BspLI GGNNCC 1 cut(s) 429
BspPI GGATC 2 cut(s) 700, 1049
BspT107I GGYRCC 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 1196
BsrDI GCAATG 1 cut(s) 678
BsrGI TGTACA 1 cut(s) 1070
BssECI CCNNGG 3 cut(s) 524, 1450, 1500
BssMI GATC 9 cut(s) 25, 276, 692, 931, 1041, 1171, 1381, 1474, 1568
BssT1I CCWWGG 2 cut(s) 524, 1500
Bst2UI CCWGG 2 cut(s) 17, 1452
Bst4CI ACNGT 2 cut(s) 553, 754
Bst6I CTCTTC 2 cut(s) 207, 1010
BstAUI TGTACA 1 cut(s) 1070
BstC8I GCNNGC 2 cut(s) 664, 1185
BstDEI CTNAG 6 cut(s) 618, 714, 964, 1302, 1524, 1565
BstF5I GGATG 1 cut(s) 129
BstHHI GCGC 2 cut(s) 64, 409
BstKTI GATC 9 cut(s) 28, 279, 695, 934, 1044, 1174, 1384, 1477, 1571
BstMAI GTCTC 3 cut(s) 1196, 1514, 1605
BstMBI GATC 9 cut(s) 25, 276, 692, 931, 1041, 1171, 1381, 1474, 1568
BstMWI GCNNNNNNNGC 3 cut(s) 320, 663, 1307
BstNI CCWGG 2 cut(s) 17, 1452
BstNSI RCATGY 3 cut(s) 809, 871, 1275
BstSCI CCNGG 2 cut(s) 15, 1450
BstSFI CTRYAG 1 cut(s) 1464
BstV1I GCAGC 2 cut(s) 298, 421
BstV2I GAAGAC 1 cut(s) 901
BstX2I RGATCY 3 cut(s) 692, 931, 1568
BstYI RGATCY 3 cut(s) 692, 931, 1568
BsuI GTATCC 1 cut(s) 1423
BsuRI GGCC 2 cut(s) 1098, 1472
BtrI CACGTC 1 cut(s) 980
BtsCI GGATG 1 cut(s) 129
BtsI GCAGTG 1 cut(s) 1212
BtsIMutI CAGTG 1 cut(s) 1212
Cac8I GCNNGC 2 cut(s) 664, 1185
CfoI GCGC 2 cut(s) 64, 409
CseI GACGC 1 cut(s) 280
CsiI ACCWGGT 1 cut(s) 15
Csp6I GTAC 3 cut(s) 829, 1071, 1583
CviQI GTAC 3 cut(s) 829, 1071, 1583
DdeI CTNAG 6 cut(s) 618, 714, 964, 1302, 1524, 1565
DpnI GATC 9 cut(s) 27, 278, 694, 933, 1043, 1173, 1383, 1476, 1570
DpnII GATC 9 cut(s) 25, 276, 692, 931, 1041, 1171, 1381, 1474, 1568
DraI TTTAAA 1 cut(s) 996
DraIII CACNNNGTG 1 cut(s) 19
DrdI GACNNNNNNGTC 1 cut(s) 757
DseDI GACNNNNNNGTC 1 cut(s) 757
Eam1104I CTCTTC 2 cut(s) 207, 1010
EarI CTCTTC 2 cut(s) 207, 1010
Ecl136II GAGCTC 1 cut(s) 782
Eco130I CCWWGG 2 cut(s) 524, 1500
Eco24I GRGCYC 1 cut(s) 784
Eco31I GGTCTC 1 cut(s) 1196
Eco32I GATATC 1 cut(s) 442
Eco53kI GAGCTC 1 cut(s) 782
EcoICRI GAGCTC 1 cut(s) 782
EcoRII CCWGG 2 cut(s) 15, 1450
EcoRV GATATC 1 cut(s) 442
EcoT14I CCWWGG 2 cut(s) 524, 1500
EcoT38I GRGCYC 1 cut(s) 784
ErhI CCWWGG 2 cut(s) 524, 1500
FaqI GGGAC 2 cut(s) 280, 684
Fnu4HI GCNGC 4 cut(s) 291, 312, 410, 413
FokI GGATG 1 cut(s) 136
FriOI GRGCYC 1 cut(s) 784
Fsp4HI GCNGC 4 cut(s) 291, 312, 410, 413
FspBI CTAG 3 cut(s) 501, 1079, 1615
FspI TGCGCA 1 cut(s) 408
GlaI GCGC 2 cut(s) 63, 408
GluI GCNGC 4 cut(s) 291, 312, 410, 413
GsaI CCCAGC 2 cut(s) 297, 485
GsuI CTGGAG 2 cut(s) 1565, 1616
HaeIII GGCC 2 cut(s) 1098, 1472
HgaI GACGC 1 cut(s) 280
HhaI GCGC 2 cut(s) 64, 409
Hin6I GCGC 2 cut(s) 62, 407
HinP1I GCGC 2 cut(s) 62, 407
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 1 cut(s) 1522
HphI GGTGA 6 cut(s) 221, 341, 404, 998, 1036, 1391
Hpy166II GTNNAC 1 cut(s) 1073
Hpy188III TCNNGA 9 cut(s) 35, 578, 785, 1313, 1517, 1526, 1544, 1575, 1595
Hpy8I GTNNAC 1 cut(s) 1073
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 2 cut(s) 200, 1057
HpyCH4III ACNGT 2 cut(s) 553, 754
HpyCH4IV ACGT 3 cut(s) 158, 673, 979
HpyCH4V TGCA 9 cut(s) 220, 569, 662, 683, 805, 875, 899, 1349, 1421
HpyF10VI GCNNNNNNNGC 3 cut(s) 320, 663, 1307
HpyF3I CTNAG 6 cut(s) 618, 714, 964, 1302, 1524, 1565
HpySE526I ACGT 3 cut(s) 158, 673, 979
HspAI GCGC 2 cut(s) 62, 407
Kzo9I GATC 9 cut(s) 25, 276, 692, 931, 1041, 1171, 1381, 1474, 1568
LmnI GCTCC 3 cut(s) 308, 779, 1597
Lsp1109I GCAGC 2 cut(s) 298, 421
LweI GCATC 7 cut(s) 510, 603, 696, 727, 979, 1215, 1522
MabI ACCWGGT 1 cut(s) 15
MaeI CTAG 3 cut(s) 501, 1079, 1615
MaeII ACGT 3 cut(s) 158, 673, 979
MaeIII GTNAC 1 cut(s) 1124
MalI GATC 9 cut(s) 27, 278, 694, 933, 1043, 1173, 1383, 1476, 1570
MboI GATC 9 cut(s) 25, 276, 692, 931, 1041, 1171, 1381, 1474, 1568
MboII GAAGA 7 cut(s) 139, 224, 622, 901, 1027, 1103, 1563
MfeI CAATTG 1 cut(s) 1134
MflI RGATCY 3 cut(s) 692, 931, 1568
MhlI GDGCHC 2 cut(s) 784, 1067
MluCI AATT 9 cut(s) 30, 43, 148, 936, 954, 1025, 1134, 1146, 1445
MlyI GAGTC 1 cut(s) 1516
MmeI TCCRAC 1 cut(s) 524
MroXI GAANNNNTTC 1 cut(s) 629
MseI TTAA 5 cut(s) 174, 372, 746, 995, 1412
MslI CAYNNNNRTG 3 cut(s) 810, 923, 978
MspA1I CMGCKG 1 cut(s) 412
MspR9I CCNGG 2 cut(s) 17, 1452
MunI CAATTG 1 cut(s) 1134
Mva1269I GAATGC 2 cut(s) 64, 859
MvaI CCWGG 2 cut(s) 17, 1452
MwoI GCNNNNNNNGC 3 cut(s) 320, 663, 1307
NdeII GATC 9 cut(s) 25, 276, 692, 931, 1041, 1171, 1381, 1474, 1568
NlaIV GGNNCC 1 cut(s) 429
NmeAIII GCCGAG 1 cut(s) 841
NmuCI GTSAC 1 cut(s) 1124
NsbI TGCGCA 1 cut(s) 408
NspI RCATGY 3 cut(s) 809, 871, 1275
PciI ACATGT 1 cut(s) 867
PcsI WCGNNNNNNNCGW 1 cut(s) 670
PctI GAATGC 2 cut(s) 64, 859
PdmI GAANNNNTTC 1 cut(s) 629
PflMI CCANNNNNTGG 1 cut(s) 1117
PkrI GCNGC 4 cut(s) 292, 313, 411, 414
PleI GAGTC 1 cut(s) 1516
PpsI GAGTC 1 cut(s) 1516
PscI ACATGT 1 cut(s) 867
PshBI ATTAAT 1 cut(s) 372
PsiI TTATAA 1 cut(s) 318
Psp124BI GAGCTC 1 cut(s) 784
Psp6I CCWGG 2 cut(s) 15, 1450
PspFI CCCAGC 2 cut(s) 293, 481
PspGI CCWGG 2 cut(s) 15, 1450
PspN4I GGNNCC 1 cut(s) 429
PsuI RGATCY 3 cut(s) 692, 931, 1568
RsaI GTAC 3 cut(s) 830, 1072, 1584
RsaNI GTAC 3 cut(s) 829, 1071, 1583
RseI CAYNNNNRTG 3 cut(s) 810, 923, 978
SacI GAGCTC 1 cut(s) 784
SaqAI TTAA 5 cut(s) 174, 372, 746, 995, 1412
SatI GCNGC 4 cut(s) 291, 312, 410, 413
Sau3AI GATC 9 cut(s) 25, 276, 692, 931, 1041, 1171, 1381, 1474, 1568
SchI GAGTC 1 cut(s) 1516
ScrFI CCNGG 2 cut(s) 17, 1452
SduI GDGCHC 2 cut(s) 784, 1067
SexAI ACCWGGT 1 cut(s) 15
SfaNI GCATC 7 cut(s) 510, 603, 696, 727, 979, 1215, 1522
SfcI CTRYAG 1 cut(s) 1464
SmiMI CAYNNNNRTG 3 cut(s) 810, 923, 978
Sse9I AATT 9 cut(s) 30, 43, 148, 936, 954, 1025, 1134, 1146, 1445
SsiI CCGC 2 cut(s) 290, 412
SspMI CTAG 3 cut(s) 501, 1079, 1615
SstI GAGCTC 1 cut(s) 784
StyD4I CCNGG 2 cut(s) 15, 1450
StyI CCWWGG 2 cut(s) 524, 1500
TaaI ACNGT 2 cut(s) 553, 754
TaiI ACGT 3 cut(s) 161, 676, 982
TaqI TCGA 5 cut(s) 24, 279, 903, 1276, 1314
TasI AATT 9 cut(s) 30, 43, 148, 936, 954, 1025, 1134, 1146, 1445
TatI WGTACW 1 cut(s) 1070
TauI GCSGC 2 cut(s) 293, 415
Tru1I TTAA 5 cut(s) 174, 372, 746, 995, 1412
Tru9I TTAA 5 cut(s) 174, 372, 746, 995, 1412
TscAI CASTG 1 cut(s) 1212
TseFI GTSAC 1 cut(s) 1124
TseI GCWGC 2 cut(s) 311, 409
Tsp45I GTSAC 1 cut(s) 1124
TspDTI ATGAA 6 cut(s) 140, 667, 941, 1028, 1039, 1551
TspRI CASTG 1 cut(s) 1212
Van91I CCANNNNNTGG 1 cut(s) 1117
VspI ATTAAT 1 cut(s) 372
XapI RAATTY 3 cut(s) 30, 43, 1445
XceI RCATGY 3 cut(s) 809, 871, 1275
XmnI GAANNNNTTC 1 cut(s) 629
XspI CTAG 3 cut(s) 501, 1079, 1615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.