RchiOBHm_Chr4g0435031

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016702
Physical Location & Seq
Reverse (-)
58664565 .. 58666647
2083 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40347

Sequence Viewer

Length: 1842 bp
ATGAAAAACTTTCTCACTTGCGTGGTGAAGATAGCGAAGATTGCGCTTACATTGGCCCAAAAATCCGCTCACAGAATCGTTGAAGAAAAGTTCATCTCACTCTTGCAGTCATGTAAGAGTATAAAGCAACTTCACCAGATACAGGCGCAGGTAACCCTCCACGGTTTTTCACGGAATGGCTACGTTACCCCGAAATTAGTCACGGCATGTGGGGAACTGAAGCAAATGGGTTATGCCCGCCAGGTGTTCGATCAAATTCCTGAACCAAATTTTGCTCTATGGAATGCATTGTTGAGAGGGTATGCAAAGAATGAGATTCATAGGGAGGTTGTAGCTTTGTTTGGTAGGATGAAGAGCATGGACATAATGCCGAATTGCTATACATTCCCCGTTGTGATCAAATGTTGTGGGAGATTGAGTAGGTTGGTAGAAGGTGAAGAGGTGCATTGTGTTGTGATAAAATGTGGGTTTAGAGCAAACCCCTTTGTGGGAACGACGCTGATCGAAATGTATGCGGCTGGGGGAGTAATTGGAGCTGCTTATAAGGTGTTTGGTGAGATGTTTGAGAGAAATGTGGTTGCTTGGACTTCCATGATTAATGGCTACATTTTGGGTGGTGATATGGTTTCTGCACAGCGCCTTTTTGATTTGGCGCCAGAACGAGATGTTGTGTTGTGGAACACTATGGTTTCTGGTTATATTGAGCAGCGGGATATGGTAACGGCTAGAAAACTTTTTGATAAGATGCCGAGAAGAGATGTTATTTGCTGGAATACGGTATTGAATGGCTATGCAAGTAATCAAGACATTGAGGCTTGTGAGGATTTGTTTGAGAAGATGCCTGAGAGGAACGTTTTCTCGTGGAATGGATTGATTGGCGGGTATGCACGCAATGGACGTTTCATTGAAGTTCTGGAATCTTTCAAGCGGATGCTTACTGAGGGTAATGTGCTTCCTAACGATCCCACATTAACAACTGTGCTGTCAGCGTGTGCGAGATTAGGAGCTCTTGATTTGGGTAAGTGGGTGCATGTATATGCAGAGAACATAGGATACAAGAGAAATGTATATGTTGGGAATGCGTTGATTGACATGTATGCAAAATGTGGTGTTGTTGACAATGCAATAGATGTCTTCAAGAACATGGATAAGAAAGATTTAATTACTTGGAACACTATAATATGTGGCTTAGCAACACATGGACGCGGGGGTGATGCCTTAAAGTTGTTTTCACAGATGAAGACTTCTGGATTGAAACCAGATGGGATCACCTTCATAGGCATTCTGTGCTCTTGTACACATCTAGGATTAGTTGAAGATGGCCTGTTGTATTTCCAATCAATGGTTAGTGACTATTCAATTGTGCCTCAAATTGAGCATTATGGTTGTATGGTTGATCTGTTTGGACGAGCCGGTCTTTTGGAACAGGCTGTGGAGTTTGTGAGGCAGATGCCAATAGAGGCAGATGTTGTCATTTGGGCTGCCTTACTTGGAGCATGTCGAACTTACAAGAACATTGAGTTGGCTGAGTTGGCTCTTGAACGGCTCATTGAACTTGAACCAAAAAACCCTGCCAATTATGTCATGCTTTCGAATATATATGGTGATCTTGGGAGATGGAAAGATGTGGCAAGATTAAAAGTTGCAATCAGGGATACCGGGTTCAAAAAATTCCCCGGTATTAGCTCTATTGAGGCCAATCATGGTGTGGTTGAATTTTGTTCCTTGGATAAGAGGCATCCTGAGACCGAGGAAATATATGAAGCCTTGAAGGGATTGACCAGTGCGCTAAGATCATCTGGATATGTACCAGACATTCTGGAGCTTGGGCATGGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

613

Amino Acids

68.53

Weight (kDa)

6.86

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 89 - 137 9.5e-09 PPR repeat family
PPR_2 PF13041 221 - 253 3.1e-06 PPR repeat family
PPR_2 PF13041 252 - 285 1.4e-06 PPR repeat family
PPR PF01535 256 - 285 9.5e-06 PPR repeat
PPR_2 PF13041 283 - 333 5.4e-07 PPR repeat family
PPR PF01535 286 - 315 3.2e-06 PPR repeat
PPR_2 PF13041 386 - 432 3.2e-11 PPR repeat family
PPR PF01535 388 - 418 4.2e-06 PPR repeat
E_motif PF20431 503 - 565 1.4e-22 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016702)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13410
fragaria_vesca FvH4_4g27250 FvH4_4g27250 FvH4_4g27250
malus_domestica MD15G1390900.v1.1
prunus_persica Prupe.1G312300_v2.0.a1
pyrus_communis pycom15g35000
rosa_chinensis RchiOBHm_Chr4g0435031
rosa_laevigata RLG00000006626
rosa_multiflora Rmu_sc0000400.1_g000012
rosa_roxburghii Rroxscaffold_5G00376240
rosa_rugosa Rorug04G0281900
rosa_samantha Rh4BG345300
rosa_wichuraiana Rw4G029410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AasI GACNNNNNNGTC 1 cut(s) 1413
Acc36I ACCTGC 1 cut(s) 139
AccB1I GGYRCC 1 cut(s) 652
AccB7I CCANNNNNTGG 1 cut(s) 1342
AccBSI CCGCTC 1 cut(s) 68
AccII CGCG 1 cut(s) 1206
AciI CCGC 7 cut(s) 66, 238, 515, 709, 879, 928, 1206
AclI AACGTT 1 cut(s) 852
AclWI GGATC 2 cut(s) 956, 1274
AcsI RAATTY 4 cut(s) 255, 268, 1670, 1715
AcuI CTGAAG 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 653
AfaI GTAC 2 cut(s) 1297, 1809
AfiI CCNNNNNNNGG 4 cut(s) 142, 487, 488, 1342
AflIII ACRYGT 1 cut(s) 1092
AjnI CCWGG 1 cut(s) 240
AjuI GAANNNNNNNTTGG 2 cut(s) 1505, 1537
AleI CACNNNNGTG 1 cut(s) 20
AloI GAACNNNNNNTCC 2 cut(s) 1646, 1678
AluBI AGCT 5 cut(s) 335, 536, 1007, 1686, 1825
AluI AGCT 5 cut(s) 335, 536, 1007, 1686, 1825
Alw21I GWGCWC 2 cut(s) 1009, 1292
Alw26I GTCTC 2 cut(s) 1739, 1830
AlwI GGATC 2 cut(s) 956, 1274
AoxI GGCC 3 cut(s) 54, 1321, 1695
ApeKI GCWGC 3 cut(s) 536, 706, 1481
ApoI RAATTY 4 cut(s) 255, 268, 1670, 1715
AseI ATTAAT 1 cut(s) 597
Asp700I GAANNNNTTC 1 cut(s) 854
AspLEI GCGC 5 cut(s) 46, 148, 639, 655, 1789
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 2 cut(s) 1660, 1677
AsuHPI GGTGA 8 cut(s) 37, 125, 446, 566, 629, 1223, 1261, 1616
AsuII TTCGAA 1 cut(s) 1592
BanI GGYRCC 1 cut(s) 652
BanII GRGCYC 1 cut(s) 1009
BauI CACGAG 1 cut(s) 859
BbsI GAAGAC 2 cut(s) 1126, 1247
Bbv12I GWGCWC 2 cut(s) 1009, 1292
BbvI GCAGC 3 cut(s) 523, 718, 1468
BccI CCATC 3 cut(s) 1256, 1313, 1611
BceAI ACGGC 3 cut(s) 219, 738, 1559
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BciT130I CCWGG 1 cut(s) 242
BciVI GTATCC 2 cut(s) 1046, 1648
BclI TGATCA 1 cut(s) 396
BcnI CCSGG 2 cut(s) 1660, 1677
BcoDI GTCTC 2 cut(s) 1739, 1830
BfaI CTAG 3 cut(s) 726, 1304, 1840
BfoI RGCGCY 2 cut(s) 640, 656
BfuAI ACCTGC 1 cut(s) 139
BfuI GTATCC 2 cut(s) 1046, 1648
BisI GCNGC 4 cut(s) 516, 537, 707, 1482
BlpI GCTNAGC 1 cut(s) 1189
BlsI GCNGC 4 cut(s) 517, 538, 708, 1483
Bme1390I CCNGG 3 cut(s) 242, 1660, 1677
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 654
BmrFI CCNGG 3 cut(s) 242, 1660, 1677
BmsI GCATC 6 cut(s) 735, 828, 921, 1204, 1440, 1747
BpiI GAAGAC 2 cut(s) 1126, 1247
BpmI CTGGAG 1 cut(s) 1841
Bpu1102I GCTNAGC 1 cut(s) 1189
Bpu14I TTCGAA 1 cut(s) 1592
BpuMI CCSGG 2 cut(s) 1660, 1677
BsaHI GRCGYC 1 cut(s) 653
BsaI GGTCTC 1 cut(s) 1739
BsaJI CCNNGG 4 cut(s) 160, 1675, 1725, 1749
BsaXI ACNNNNNCTCC 2 cut(s) 403, 433
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 487, 488, 1342
Bse118I RCCGGY 1 cut(s) 1412
Bse1I ACTGG 1 cut(s) 1782
Bse3DI GCAATG 1 cut(s) 898
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 4 cut(s) 160, 1675, 1725, 1749
BseGI GGATG 3 cut(s) 354, 936, 1738
BseLI CCNNNNNNNGG 4 cut(s) 142, 487, 488, 1342
BseMI GCAATG 1 cut(s) 898
BseMII CTCAG 4 cut(s) 834, 930, 1518, 1734
BseNI ACTGG 1 cut(s) 1782
BseXI GCAGC 3 cut(s) 523, 718, 1468
BseYI CCCAGC 1 cut(s) 518
BsgI GTGCAG 1 cut(s) 615
Bsh1236I CGCG 1 cut(s) 1206
BshFI GGCC 3 cut(s) 56, 1323, 1697
BshNI GGYRCC 1 cut(s) 652
BsiHKAI GWGCWC 2 cut(s) 1009, 1292
BsiSI CCGG 3 cut(s) 1413, 1659, 1677
BslI CCNNNNNNNGG 4 cut(s) 142, 487, 488, 1342
BsmAI GTCTC 2 cut(s) 1739, 1830
BsmI GAATGC 3 cut(s) 289, 1084, 1281
BsnI GGCC 3 cut(s) 56, 1323, 1697
Bso31I GGTCTC 1 cut(s) 1739
Bsp119I TTCGAA 1 cut(s) 1592
Bsp1286I GDGCHC 2 cut(s) 1009, 1292
Bsp1407I TGTACA 1 cut(s) 1295
Bsp143I GATC 8 cut(s) 250, 396, 501, 961, 1266, 1396, 1606, 1793
Bsp1720I GCTNAGC 1 cut(s) 1189
BspACI CCGC 7 cut(s) 66, 238, 515, 709, 879, 928, 1206
BspANI GGCC 3 cut(s) 56, 1323, 1697
BspCNI CTCAG 4 cut(s) 835, 931, 1519, 1735
BspFNI CGCG 1 cut(s) 1206
BspLI GGNNCC 1 cut(s) 654
BspMI ACCTGC 1 cut(s) 139
BspPI GGATC 2 cut(s) 956, 1274
BspQI GCTCTTC 1 cut(s) 347
BspT104I TTCGAA 1 cut(s) 1592
BspT107I GGYRCC 1 cut(s) 652
BspTNI GGTCTC 1 cut(s) 1739
BsrBI CCGCTC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 898
BsrFI RCCGGY 1 cut(s) 1412
BsrGI TGTACA 1 cut(s) 1295
BsrI ACTGG 1 cut(s) 1782
BssAI RCCGGY 1 cut(s) 1412
BssECI CCNNGG 4 cut(s) 160, 1675, 1725, 1749
BssMI GATC 8 cut(s) 250, 396, 501, 961, 1266, 1396, 1606, 1793
BssNI GRCGYC 1 cut(s) 653
BssSI CACGAG 1 cut(s) 859
BssT1I CCWWGG 1 cut(s) 1725
Bst2BI CACGAG 1 cut(s) 859
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 3 cut(s) 164, 778, 979
Bst6I CTCTTC 3 cut(s) 347, 432, 748
BstACI GRCGYC 1 cut(s) 653
BstAPI GCANNNNNTGC 1 cut(s) 1287
BstAUI TGTACA 1 cut(s) 1295
BstBI TTCGAA 1 cut(s) 1592
BstC8I GCNNGC 2 cut(s) 238, 889
BstDEI CTNAG 6 cut(s) 843, 939, 1189, 1527, 1743, 1790
BstDSI CCRYGG 1 cut(s) 160
BstEII GGTNACC 1 cut(s) 151
BstF5I GGATG 3 cut(s) 354, 936, 1738
BstFNI CGCG 1 cut(s) 1206
BstH2I RGCGCY 2 cut(s) 640, 656
BstHHI GCGC 5 cut(s) 46, 148, 639, 655, 1789
BstKTI GATC 8 cut(s) 253, 399, 504, 964, 1269, 1399, 1609, 1796
BstMAI GTCTC 2 cut(s) 1739, 1830
BstMBI GATC 8 cut(s) 250, 396, 501, 961, 1266, 1396, 1606, 1793
BstMWI GCNNNNNNNGC 3 cut(s) 41, 1287, 1532
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 4 cut(s) 210, 1034, 1096, 1500
BstPI GGTNACC 1 cut(s) 151
BstSCI CCNGG 3 cut(s) 240, 1658, 1675
BstUI CGCG 1 cut(s) 1206
BstV1I GCAGC 3 cut(s) 523, 718, 1468
BstV2I GAAGAC 2 cut(s) 1126, 1247
BsuI GTATCC 2 cut(s) 1046, 1648
BsuRI GGCC 3 cut(s) 56, 1323, 1697
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 3 cut(s) 354, 936, 1738
BtsIMutI CAGTG 1 cut(s) 1789
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 2 cut(s) 238, 889
CfoI GCGC 5 cut(s) 46, 148, 639, 655, 1789
Cfr10I RCCGGY 1 cut(s) 1412
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 2 cut(s) 505, 1212
Csp6I GTAC 2 cut(s) 1296, 1808
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviQI GTAC 2 cut(s) 1296, 1808
DdeI CTNAG 6 cut(s) 843, 939, 1189, 1527, 1743, 1790
DinI GGCGCC 1 cut(s) 654
DpnI GATC 8 cut(s) 252, 398, 503, 963, 1268, 1398, 1608, 1795
DpnII GATC 8 cut(s) 250, 396, 501, 961, 1266, 1396, 1606, 1793
DrdI GACNNNNNNGTC 1 cut(s) 1413
DseDI GACNNNNNNGTC 1 cut(s) 1413
Eam1104I CTCTTC 3 cut(s) 347, 432, 748
EarI CTCTTC 3 cut(s) 347, 432, 748
Ecl136II GAGCTC 1 cut(s) 1007
Eco130I CCWWGG 1 cut(s) 1725
Eco24I GRGCYC 1 cut(s) 1009
Eco31I GGTCTC 1 cut(s) 1739
Eco53kI GAGCTC 1 cut(s) 1007
Eco57I CTGAAG 1 cut(s) 239
Eco91I GGTNACC 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 1007
EcoO65I GGTNACC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 1725
EcoT22I ATGCAT 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 1009
EgeI GGCGCC 1 cut(s) 654
EheI GGCGCC 1 cut(s) 654
ErhI CCWWGG 1 cut(s) 1725
FauI CCCGC 4 cut(s) 245, 702, 872, 1199
FbaI TGATCA 1 cut(s) 396
Fnu4HI GCNGC 4 cut(s) 516, 537, 707, 1482
FokI GGATG 3 cut(s) 361, 943, 1725
FriOI GRGCYC 1 cut(s) 1009
Fsp4HI GCNGC 4 cut(s) 516, 537, 707, 1482
FspBI CTAG 3 cut(s) 726, 1304, 1840
GlaI GCGC 5 cut(s) 45, 147, 638, 654, 1788
GluI GCNGC 4 cut(s) 516, 537, 707, 1482
GsaI CCCAGC 1 cut(s) 522
GsuI CTGGAG 1 cut(s) 1841
HaeII RGCGCY 2 cut(s) 640, 656
HaeIII GGCC 3 cut(s) 56, 1323, 1697
HapII CCGG 3 cut(s) 1413, 1659, 1677
HgaI GACGC 2 cut(s) 505, 1212
HhaI GCGC 5 cut(s) 46, 148, 639, 655, 1789
Hin1I GRCGYC 1 cut(s) 653
Hin6I GCGC 5 cut(s) 44, 146, 637, 653, 1787
HinP1I GCGC 5 cut(s) 44, 146, 637, 653, 1787
HincII GTYRAC 1 cut(s) 1117
HindII GTYRAC 1 cut(s) 1117
HinfI GANTC 3 cut(s) 75, 316, 917
HpaII CCGG 3 cut(s) 1413, 1659, 1677
HphI GGTGA 8 cut(s) 37, 125, 446, 566, 629, 1223, 1261, 1616
Hpy166II GTNNAC 2 cut(s) 1117, 1298
Hpy8I GTNNAC 2 cut(s) 1117, 1298
Hpy99I CGWCG 1 cut(s) 499
HpyAV CCTTC 3 cut(s) 425, 1282, 1765
HpyCH4III ACNGT 3 cut(s) 164, 778, 979
HpyCH4IV ACGT 3 cut(s) 183, 852, 898
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 1287, 1532
HpyF3I CTNAG 6 cut(s) 843, 939, 1189, 1527, 1743, 1790
HpySE526I ACGT 3 cut(s) 183, 852, 898
Hsp92I GRCGYC 1 cut(s) 653
HspAI GCGC 5 cut(s) 44, 146, 637, 653, 1787
KasI GGCGCC 1 cut(s) 652
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 8 cut(s) 250, 396, 501, 961, 1266, 1396, 1606, 1793
LguI GCTCTTC 1 cut(s) 347
LmnI GCTCC 4 cut(s) 533, 1004, 1493, 1822
Lsp1109I GCAGC 3 cut(s) 523, 718, 1468
LweI GCATC 6 cut(s) 735, 828, 921, 1204, 1440, 1747
MaeI CTAG 3 cut(s) 726, 1304, 1840
MaeII ACGT 3 cut(s) 183, 852, 898
MaeIII GTNAC 5 cut(s) 151, 184, 199, 718, 1349
MalI GATC 8 cut(s) 252, 398, 503, 963, 1268, 1398, 1608, 1795
MbiI CCGCTC 1 cut(s) 68
MboI GATC 8 cut(s) 250, 396, 501, 961, 1266, 1396, 1606, 1793
MfeI CAATTG 1 cut(s) 1359
MhlI GDGCHC 2 cut(s) 1009, 1292
Mly113I GGCGCC 1 cut(s) 653
Mph1103I ATGCAT 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 854
MseI TTAA 5 cut(s) 597, 971, 1160, 1220, 1637
MslI CAYNNNNRTG 2 cut(s) 20, 1035
MspA1I CMGCKG 1 cut(s) 709
MspI CCGG 3 cut(s) 1413, 1659, 1677
MspR9I CCNGG 3 cut(s) 242, 1660, 1677
MunI CAATTG 1 cut(s) 1359
Mva1269I GAATGC 3 cut(s) 289, 1084, 1281
MvaI CCWGG 1 cut(s) 242
MvnI CGCG 1 cut(s) 1206
MwoI GCNNNNNNNGC 3 cut(s) 41, 1287, 1532
NarI GGCGCC 1 cut(s) 653
NciI CCSGG 2 cut(s) 1660, 1677
NdeII GATC 8 cut(s) 250, 396, 501, 961, 1266, 1396, 1606, 1793
NlaIV GGNNCC 1 cut(s) 654
NmeAIII GCCGAG 1 cut(s) 774
NmuCI GTSAC 2 cut(s) 199, 1349
NsiI ATGCAT 1 cut(s) 289
NspI RCATGY 4 cut(s) 210, 1034, 1096, 1500
NspV TTCGAA 1 cut(s) 1592
OliI CACNNNNGTG 1 cut(s) 20
PciI ACATGT 1 cut(s) 1092
PciSI GCTCTTC 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 895
PctI GAATGC 3 cut(s) 289, 1084, 1281
PdmI GAANNNNTTC 1 cut(s) 854
PfeI GAWTC 3 cut(s) 75, 316, 917
PflMI CCANNNNNTGG 1 cut(s) 1342
PkrI GCNGC 4 cut(s) 517, 538, 708, 1483
PluTI GGCGCC 1 cut(s) 656
PscI ACATGT 1 cut(s) 1092
PshBI ATTAAT 1 cut(s) 597
PsiI TTATAA 1 cut(s) 543
Psp124BI GAGCTC 1 cut(s) 1009
Psp1406I AACGTT 1 cut(s) 852
Psp6I CCWGG 1 cut(s) 240
PspEI GGTNACC 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 518
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 654
PspPI GGNCC 1 cut(s) 55
PsrI GAACNNNNNNTAC 2 cut(s) 1037, 1069
RsaI GTAC 2 cut(s) 1297, 1809
RsaNI GTAC 2 cut(s) 1296, 1808
RseI CAYNNNNRTG 2 cut(s) 20, 1035
SacI GAGCTC 1 cut(s) 1009
SapI GCTCTTC 1 cut(s) 347
SaqAI TTAA 5 cut(s) 597, 971, 1160, 1220, 1637
SatI GCNGC 4 cut(s) 516, 537, 707, 1482
Sau3AI GATC 8 cut(s) 250, 396, 501, 961, 1266, 1396, 1606, 1793
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 3 cut(s) 242, 1660, 1677
SduI GDGCHC 2 cut(s) 1009, 1292
SfaNI GCATC 6 cut(s) 735, 828, 921, 1204, 1440, 1747
SfoI GGCGCC 1 cut(s) 654
SfuI TTCGAA 1 cut(s) 1592
SmiMI CAYNNNNRTG 2 cut(s) 20, 1035
SsiI CCGC 7 cut(s) 66, 238, 515, 709, 879, 928, 1206
SspDI GGCGCC 1 cut(s) 652
SspMI CTAG 3 cut(s) 726, 1304, 1840
SstI GAGCTC 1 cut(s) 1009
StyD4I CCNGG 3 cut(s) 240, 1658, 1675
StyI CCWWGG 1 cut(s) 1725
TaaI ACNGT 3 cut(s) 164, 778, 979
TaiI ACGT 3 cut(s) 186, 855, 901
TaqI TCGA 4 cut(s) 249, 504, 1501, 1592
TaqII GACCGA 1 cut(s) 1763
TatI WGTACW 1 cut(s) 1295
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 3 cut(s) 75, 316, 917
Tru1I TTAA 5 cut(s) 597, 971, 1160, 1220, 1637
Tru9I TTAA 5 cut(s) 597, 971, 1160, 1220, 1637
TscAI CASTG 1 cut(s) 1789
TseFI GTSAC 2 cut(s) 199, 1349
TseI GCWGC 3 cut(s) 536, 706, 1481
Tsp45I GTSAC 2 cut(s) 199, 1349
TspDTI ATGAA 8 cut(s) 17, 82, 308, 365, 892, 1253, 1264, 1776
TspGWI ACGGA 1 cut(s) 187
TspRI CASTG 1 cut(s) 1789
Van91I CCANNNNNTGG 1 cut(s) 1342
VspI ATTAAT 1 cut(s) 597
XapI RAATTY 4 cut(s) 255, 268, 1670, 1715
XceI RCATGY 4 cut(s) 210, 1034, 1096, 1500
XcmI CCANNNNNNNNNTGG 1 cut(s) 1705
XmnI GAANNNNTTC 1 cut(s) 854
XspI CTAG 3 cut(s) 726, 1304, 1840
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.