Prupe.1G312300_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016702
Physical Location & Seq
Forward (+)
30294216 .. 30295825
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G312300.1

Sequence Viewer

Length: 1383 bp
ATGCCCACAAAGTGTTCGATGGAATTCCGGACCCGAACTTTGCTTTATGGAATGCAATGTTCAGAGGTGATTGGAGCTGCTTACAAGGTGTTCGGTGAGATGTTCGAGAGGAATGTGGTTGCTTGGACTTCCATGATTAATGGTTACATCTTGTGTGGTGATATGGTTTCTGCACAGCGCCTTTTTCATTTGGCTCCCGAACGTGATATTGTGTTGTGGAACACCATGGTTTCAGGTTATATTGAGCTGAGGGATATGGTGGCAGCTAGAAAACTCTTTGATGACATGCCAAGACGAGATGTGATGGGTTGGAATACCGTTTTGAATGGTTATGCAAGTAATGGGGAGATTGATGCTTGTGAGAAGTTGTTTGAAGAGATGTCTGAGAGGAATGTTTTCTCTTGGAATGGATTAATTGGAGGATATGCACGTAATGGACGTTTCTTTCAAGTTCTGGGATCTTTCAAGCGGATGCTAAGCGAGAGTGATGTGCTTCCTAATGATGCCACCTTAGTGACTGTGTTGTCGGCGTGTGCAAGATTAGGAGCTCTTGATTTGGGTAAGTGGGTACATGTATATGCAGAGAGCATTGGGTACAAGAGAAATGTTTTCGTTGGGAATGCTTTGATTGACATGTATGCAAAATGTGGGATCATTGATAATGCACTTGACGTGTTCAAGAGCATGGATAACAAGGATTTAATTACCTGGAACACTATAATTTGTGGCTTGGCAATGCACGGTCGTGGGGCGGATGCCTTAAATTTGTTTCGCCAGATGAAGAATTATGGAGAAAACCCAGATGGGATCACCTTCATAGGCATTTTGTGCTCTTGTACACATCTTGGATTGGTCGAAGATGGCCTTTTGTATTTCCAATCAATGGTTGATGACTACTCAATTGTGCCACAGATTGAGCATTATGGTTGTATGGTGGATCTGCTGGGACGCTCGGGTCTTTTGGACCAGGCCATGAACTTTGTGAGGAAGATGCCAATGGAACCAGATGCTGTTATTTGGGCTGCCTTACTAGGGGCATGTCGGATTTACAAAAACATTGAGTTTGCAGAGCTGGCTCTTGAACGTCTCATTGAACTTGAACCGAAAAACCCTGCAAACTATGTCATGCTCTCAAATATTTATGGCGATCTTGGGAGATGGAGAGATGTGGCGAGATTAAAAGTTGCAATGAGGGATACTGGGTATAAAAAAGTCCCAGGTGTTAGCTTTATTGAGGCCAATGATGGTGTGGTTGAGTTCTATTCCTTAGATGAGAGGCATCCTGAGACTGAGGAAATATATGGAGCCTTGAGGGGATTGACGAAACTGCTAAAATCATCTGGATATGTACCAGACTTTCTGGATCTTGGGCACGGAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

461

Amino Acids

51.69

Weight (kDa)

5.22

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016702)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13410
fragaria_vesca FvH4_4g27250 FvH4_4g27250 FvH4_4g27250
malus_domestica MD15G1390900.v1.1
prunus_persica Prupe.1G312300_v2.0.a1
pyrus_communis pycom15g35000
rosa_chinensis RchiOBHm_Chr4g0435031
rosa_laevigata RLG00000006626
rosa_multiflora Rmu_sc0000400.1_g000012
rosa_roxburghii Rroxscaffold_5G00376240
rosa_rugosa Rorug04G0281900
rosa_samantha Rh4BG345300
rosa_wichuraiana Rw4G029410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 523, 954
AccB7I CCANNNNNTGG 1 cut(s) 883
AccIII TCCGGA 1 cut(s) 27
AciI CCGC 2 cut(s) 469, 752
AclWI GGATC 5 cut(s) 466, 659, 815, 945, 1371
AcsI RAATTY 2 cut(s) 23, 763
AdeI CACNNNGTG 1 cut(s) 12
AfaI GTAC 4 cut(s) 570, 596, 838, 1350
AfiI CCNNNNNNNGG 2 cut(s) 883, 1032
AflIII ACRYGT 3 cut(s) 571, 633, 672
AgsI TTSAA 8 cut(s) 325, 374, 449, 466, 679, 1082, 1094, 1100
AjiI CACGTC 1 cut(s) 673
AjnI CCWGG 3 cut(s) 707, 966, 1216
AleI CACNNNNGTG 2 cut(s) 512, 744
AluBI AGCT 6 cut(s) 77, 247, 266, 548, 1072, 1227
AluI AGCT 6 cut(s) 77, 247, 266, 548, 1072, 1227
Alw21I GWGCWC 2 cut(s) 550, 833
Alw26I GTCTC 2 cut(s) 1091, 1280
AlwI GGATC 5 cut(s) 466, 659, 815, 945, 1371
AlwNI CAGNNNCTG 1 cut(s) 1010
Ama87I CYCGRG 1 cut(s) 952
Aor13HI TCCGGA 1 cut(s) 27
AoxI GGCC 3 cut(s) 862, 969, 1236
ApeKI GCWGC 3 cut(s) 77, 263, 1022
ApoI RAATTY 2 cut(s) 23, 763
ArsI GACNNNNNNTTYG 2 cut(s) 22, 54
AseI ATTAAT 2 cut(s) 138, 413
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 30, 964
AsuHPI GGTGA 4 cut(s) 79, 107, 170, 802
AvaI CYCGRG 1 cut(s) 952
AvaII GGWCC 2 cut(s) 30, 964
BaeGI GKGCMC 1 cut(s) 1374
BanII GRGCYC 1 cut(s) 550
Bbv12I GWGCWC 2 cut(s) 550, 833
BbvCI CCTCAGC 1 cut(s) 248
BbvI GCAGC 3 cut(s) 64, 275, 1009
BccI CCATC 6 cut(s) 13, 298, 797, 854, 1152, 1238
BciT130I CCWGG 3 cut(s) 709, 968, 1218
BciVI GTATCC 1 cut(s) 1189
BcoDI GTCTC 2 cut(s) 1091, 1280
BfaI CTAG 3 cut(s) 267, 1031, 1381
BfoI RGCGCY 1 cut(s) 181
BfuI GTATCC 1 cut(s) 1189
BisI GCNGC 3 cut(s) 78, 264, 1023
BlpI GCTNAGC 1 cut(s) 476
BlsI GCNGC 3 cut(s) 79, 265, 1024
Bme1390I CCNGG 3 cut(s) 709, 968, 1218
Bme18I GGWCC 2 cut(s) 30, 964
BmeT110I CYCGRG 1 cut(s) 952
BmgBI CACGTC 1 cut(s) 673
BmgT120I GGNCC 2 cut(s) 30, 964
BmiI GGNNCC 5 cut(s) 32, 195, 1002, 1306, 1378
BmrFI CCNGG 3 cut(s) 709, 968, 1218
BmrI ACTGGG 1 cut(s) 1209
BmsI GCATC 7 cut(s) 343, 462, 493, 745, 981, 997, 1288
BmuI ACTGGG 1 cut(s) 1209
Bpu10I CCTNAGC 1 cut(s) 248
Bpu1102I GCTNAGC 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 1330
BsaAI YACGTR 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 225, 1216
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 2 cut(s) 883, 1032
Bse1I ACTGG 1 cut(s) 1204
Bse3DI GCAATG 3 cut(s) 62, 741, 1194
BseAI TCCGGA 1 cut(s) 27
BseBI CCWGG 3 cut(s) 709, 968, 1218
BseDI CCNNGG 2 cut(s) 225, 1216
BseGI GGATG 3 cut(s) 477, 760, 1279
BseLI CCNNNNNNNGG 2 cut(s) 883, 1032
BseMI GCAATG 3 cut(s) 62, 741, 1194
BseMII CTCAG 4 cut(s) 239, 375, 1275, 1281
BseNI ACTGG 1 cut(s) 1204
BseSI GKGCMC 1 cut(s) 1374
BseXI GCAGC 3 cut(s) 64, 275, 1009
BseYI CCCAGC 1 cut(s) 943
BsgI GTGCAG 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 745
BshFI GGCC 3 cut(s) 864, 971, 1238
BsiEI CGRYCG 1 cut(s) 745
BsiHKAI GWGCWC 2 cut(s) 550, 833
BsiHKCI CYCGRG 1 cut(s) 952
BsiSI CCGG 1 cut(s) 28
BslFI GGGAC 2 cut(s) 960, 1199
BslI CCNNNNNNNGG 2 cut(s) 883, 1032
BsmAI GTCTC 2 cut(s) 1091, 1280
BsmBI CGTCTC 1 cut(s) 1091
BsmFI GGGAC 2 cut(s) 960, 1199
BsmI GAATGC 2 cut(s) 57, 625
BsnI GGCC 3 cut(s) 864, 971, 1238
BsoBI CYCGRG 1 cut(s) 952
Bsp1286I GDGCHC 3 cut(s) 550, 833, 1374
Bsp13I TCCGGA 1 cut(s) 27
Bsp1407I TGTACA 1 cut(s) 836
Bsp143I GATC 6 cut(s) 458, 651, 807, 937, 1147, 1363
Bsp1720I GCTNAGC 1 cut(s) 476
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 2 cut(s) 469, 752
BspANI GGCC 3 cut(s) 864, 971, 1238
BspCNI CTCAG 4 cut(s) 240, 376, 1276, 1282
BspEI TCCGGA 1 cut(s) 27
BspLI GGNNCC 5 cut(s) 32, 195, 1002, 1306, 1378
BspPI GGATC 5 cut(s) 466, 659, 815, 945, 1371
BsrDI GCAATG 3 cut(s) 62, 741, 1194
BsrGI TGTACA 1 cut(s) 836
BsrI ACTGG 1 cut(s) 1204
BssECI CCNNGG 2 cut(s) 225, 1216
BssMI GATC 6 cut(s) 458, 651, 807, 937, 1147, 1363
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 3 cut(s) 709, 968, 1218
Bst4CI ACNGT 3 cut(s) 319, 520, 743
Bst6I CTCTTC 1 cut(s) 369
BstAPI GCANNNNNTGC 1 cut(s) 828
BstAUI TGTACA 1 cut(s) 836
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 1074
BstDEI CTNAG 7 cut(s) 248, 384, 476, 511, 1267, 1284, 1290
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 3 cut(s) 477, 760, 1279
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 6 cut(s) 461, 654, 810, 940, 1150, 1366
BstMAI GTCTC 2 cut(s) 1091, 1280
BstMBI GATC 6 cut(s) 458, 651, 807, 937, 1147, 1363
BstMCI CGRYCG 1 cut(s) 745
BstMWI GCNNNNNNNGC 2 cut(s) 828, 1073
BstNI CCWGG 3 cut(s) 709, 968, 1218
BstNSI RCATGY 4 cut(s) 289, 575, 637, 1041
BstSCI CCNGG 3 cut(s) 707, 966, 1216
BstSLI GKGCMC 1 cut(s) 1374
BstV1I GCAGC 3 cut(s) 64, 275, 1009
BstX2I RGATCY 3 cut(s) 458, 937, 1363
BstYI RGATCY 3 cut(s) 458, 937, 1363
BsuI GTATCC 1 cut(s) 1189
BsuRI GGCC 3 cut(s) 864, 971, 1238
BtgI CCRYGG 1 cut(s) 225
BtrI CACGTC 1 cut(s) 673
BtsCI GGATG 3 cut(s) 477, 760, 1279
Cac8I GCNNGC 1 cut(s) 1074
CaiI CAGNNNCTG 1 cut(s) 1010
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 30, 964
CseI GACGC 1 cut(s) 957
Csp6I GTAC 4 cut(s) 569, 595, 837, 1349
CviAII CATG 9 cut(s) 133, 226, 286, 572, 634, 685, 973, 1038, 1126
CviQI GTAC 4 cut(s) 569, 595, 837, 1349
DdeI CTNAG 7 cut(s) 248, 384, 476, 511, 1267, 1284, 1290
DpnI GATC 6 cut(s) 460, 653, 809, 939, 1149, 1365
DpnII GATC 6 cut(s) 458, 651, 807, 937, 1147, 1363
DraIII CACNNNGTG 1 cut(s) 12
DrdI GACNNNNNNGTC 2 cut(s) 523, 954
DseDI GACNNNNNNGTC 2 cut(s) 523, 954
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 1 cut(s) 767
Ecl136II GAGCTC 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 550
Eco47I GGWCC 2 cut(s) 30, 964
Eco53kI GAGCTC 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 952
EcoICRI GAGCTC 1 cut(s) 548
EcoRI GAATTC 1 cut(s) 23
EcoRII CCWGG 3 cut(s) 707, 966, 1216
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 1091
FaeI CATG 9 cut(s) 136, 229, 289, 575, 637, 688, 976, 1041, 1129
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FaqI GGGAC 2 cut(s) 960, 1199
FatI CATG 9 cut(s) 132, 225, 285, 571, 633, 684, 972, 1037, 1125
Fnu4HI GCNGC 3 cut(s) 78, 264, 1023
FokI GGATG 3 cut(s) 484, 767, 1266
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 3 cut(s) 78, 264, 1023
FspBI CTAG 3 cut(s) 267, 1031, 1381
GlaI GCGC 1 cut(s) 179
GluI GCNGC 3 cut(s) 78, 264, 1023
GsaI CCCAGC 1 cut(s) 947
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 3 cut(s) 864, 971, 1238
HapII CCGG 1 cut(s) 28
HgaI GACGC 1 cut(s) 957
HhaI GCGC 1 cut(s) 180
Hin1II CATG 9 cut(s) 136, 229, 289, 575, 637, 688, 976, 1041, 1129
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HpaII CCGG 1 cut(s) 28
HphI GGTGA 4 cut(s) 79, 107, 170, 802
Hpy166II GTNNAC 1 cut(s) 839
Hpy188I TCNGA 3 cut(s) 64, 385, 1044
Hpy188III TCNNGA 9 cut(s) 28, 106, 197, 551, 679, 1079, 1283, 1341, 1361
Hpy8I GTNNAC 1 cut(s) 839
HpyAV CCTTC 1 cut(s) 823
HpyCH4III ACNGT 3 cut(s) 319, 520, 743
HpyCH4IV ACGT 5 cut(s) 202, 430, 439, 672, 1084
HpyF10VI GCNNNNNNNGC 2 cut(s) 828, 1073
HpyF3I CTNAG 7 cut(s) 248, 384, 476, 511, 1267, 1284, 1290
HpySE526I ACGT 5 cut(s) 202, 430, 439, 672, 1084
Hsp92II CATG 9 cut(s) 136, 229, 289, 575, 637, 688, 976, 1041, 1129
HspAI GCGC 1 cut(s) 178
Kpn2I TCCGGA 1 cut(s) 27
Kzo9I GATC 6 cut(s) 458, 651, 807, 937, 1147, 1363
LmnI GCTCC 5 cut(s) 74, 199, 545, 1304, 1376
Lsp1109I GCAGC 3 cut(s) 64, 275, 1009
LweI GCATC 7 cut(s) 343, 462, 493, 745, 981, 997, 1288
MaeI CTAG 3 cut(s) 267, 1031, 1381
MaeII ACGT 5 cut(s) 202, 430, 439, 672, 1084
MaeIII GTNAC 2 cut(s) 143, 514
MalI GATC 6 cut(s) 460, 653, 809, 939, 1149, 1365
MboI GATC 6 cut(s) 458, 651, 807, 937, 1147, 1363
MboII GAAGA 4 cut(s) 386, 793, 869, 1000
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 3 cut(s) 458, 937, 1363
MhlI GDGCHC 3 cut(s) 550, 833, 1374
MluCI AATT 7 cut(s) 23, 414, 702, 720, 763, 784, 900
MmeI TCCRAC 2 cut(s) 290, 1022
MroI TCCGGA 1 cut(s) 27
MroXI GAANNNNTTC 1 cut(s) 395
MseI TTAA 5 cut(s) 138, 413, 701, 761, 1178
MslI CAYNNNNRTG 3 cut(s) 512, 576, 744
MspI CCGG 1 cut(s) 28
MspR9I CCNGG 3 cut(s) 709, 968, 1218
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 2 cut(s) 57, 625
MvaI CCWGG 3 cut(s) 709, 968, 1218
MwoI GCNNNNNNNGC 2 cut(s) 828, 1073
NcoI CCATGG 1 cut(s) 225
NdeII GATC 6 cut(s) 458, 651, 807, 937, 1147, 1363
NlaIII CATG 9 cut(s) 136, 229, 289, 575, 637, 688, 976, 1041, 1129
NlaIV GGNNCC 5 cut(s) 32, 195, 1002, 1306, 1378
NmuCI GTSAC 1 cut(s) 514
NspI RCATGY 4 cut(s) 289, 575, 637, 1041
OliI CACNNNNGTG 2 cut(s) 512, 744
PciI ACATGT 2 cut(s) 571, 633
PcsI WCGNNNNNNNCGW 1 cut(s) 436
PctI GAATGC 2 cut(s) 57, 625
PdmI GAANNNNTTC 1 cut(s) 395
PflMI CCANNNNNTGG 1 cut(s) 883
PkrI GCNGC 3 cut(s) 79, 265, 1024
Ppu21I YACGTR 1 cut(s) 431
PscI ACATGT 2 cut(s) 571, 633
PshBI ATTAAT 2 cut(s) 138, 413
Psp124BI GAGCTC 1 cut(s) 550
Psp6I CCWGG 3 cut(s) 707, 966, 1216
PspFI CCCAGC 1 cut(s) 943
PspGI CCWGG 3 cut(s) 707, 966, 1216
PspN4I GGNNCC 5 cut(s) 32, 195, 1002, 1306, 1378
PspPI GGNCC 2 cut(s) 30, 964
PstNI CAGNNNCTG 1 cut(s) 1010
PsuI RGATCY 3 cut(s) 458, 937, 1363
RsaI GTAC 4 cut(s) 570, 596, 838, 1350
RsaNI GTAC 4 cut(s) 569, 595, 837, 1349
RseI CAYNNNNRTG 3 cut(s) 512, 576, 744
SacI GAGCTC 1 cut(s) 550
SaqAI TTAA 5 cut(s) 138, 413, 701, 761, 1178
SatI GCNGC 3 cut(s) 78, 264, 1023
Sau3AI GATC 6 cut(s) 458, 651, 807, 937, 1147, 1363
Sau96I GGNCC 2 cut(s) 30, 964
ScrFI CCNGG 3 cut(s) 709, 968, 1218
SduI GDGCHC 3 cut(s) 550, 833, 1374
SfaNI GCATC 7 cut(s) 343, 462, 493, 745, 981, 997, 1288
SinI GGWCC 2 cut(s) 30, 964
SmiMI CAYNNNNRTG 3 cut(s) 512, 576, 744
SmlI CTYRAG 1 cut(s) 1309
SmoI CTYRAG 1 cut(s) 1309
Sse9I AATT 7 cut(s) 23, 414, 702, 720, 763, 784, 900
SsiI CCGC 2 cut(s) 469, 752
SspI AATATT 1 cut(s) 1138
SspMI CTAG 3 cut(s) 267, 1031, 1381
SstI GAGCTC 1 cut(s) 550
StyD4I CCNGG 3 cut(s) 707, 966, 1216
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 3 cut(s) 319, 520, 743
TaiI ACGT 5 cut(s) 205, 433, 442, 675, 1087
TaqI TCGA 3 cut(s) 17, 105, 855
TasI AATT 7 cut(s) 23, 414, 702, 720, 763, 784, 900
TatI WGTACW 1 cut(s) 836
Tru1I TTAA 5 cut(s) 138, 413, 701, 761, 1178
Tru9I TTAA 5 cut(s) 138, 413, 701, 761, 1178
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 3 cut(s) 77, 263, 1022
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 4 cut(s) 176, 794, 805, 989
Van91I CCANNNNNTGG 1 cut(s) 883
VpaK11BI GGWCC 2 cut(s) 30, 964
VspI ATTAAT 2 cut(s) 138, 413
XapI RAATTY 2 cut(s) 23, 763
XceI RCATGY 4 cut(s) 289, 575, 637, 1041
XcmI CCANNNNNNNNNTGG 1 cut(s) 1246
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 3 cut(s) 267, 1031, 1381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.