Rorug04G0281900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016702
Physical Location & Seq
Forward (+)
45509727 .. 45513994
4268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0281900.1

Sequence Viewer

Length: 2001 bp
ATGAACTCACTCGACTCGCCGCAACCACAAGAAGAAGACCCACTCCTCAAATTCATCGATTACGCCAGGTCCGCTCTCTCCCCTGAAATCGACGAAGATTCGGATCCCAACGGAAATGGGCCGGAGACCGCCCCGCCCAGCTGGAATTGGATCGCCTCTCGGATTCTCAAGACCTGCAGCGCCTACTCCAGCGGCGTTACGGCCGCGATTTTGCTCTCCGATCTCTCACAGGCATGGCATGAGCAAAATAGGGGCAGGCCTGTGAAGAAAATGCCGGAATGCGTGAAGCAATTGCGAAAGAAGAATAAGCGAAGGAAGCTTTCAAACACTGTGACTATTGATTCCATTTACGAGAAGAATTTCTTGTCCTTGAATAGTGTGTTGGAAGCAGTGATTGTCAACGTTTTTGTTCTCCCTGGCACCAACATTTATATGCTTTCCCTGGGGGACTTTTGGAGCACCAATACCATTGATCTTTATCTCCACCGCAGGTACTATGACTTGATAAATCCTACTAATGGGATTCTCAAGAAAGGAAGGCAGATCTTCCTCACGGGGTGCCATCTTCGTGCTGCTGCTGGAGGAGGGTCTCGTTGTCCTCGACTGTTGCCAACAGAATATCTAGTGATATTGTTGGATGAGGATGATGATGGTGATGCAATGCTGCTAGGAGCTCAGTTTTGTTCAGATTCATTCTCCTCAATTTCTCTTGATGCATTTAGTAAAAACGTTTCTTATTCATTGTATGCAAGAATTGAGCTCATTGGCCCACTGGAAGTTCGAGGAAAGTTTGGAACTTTACAAAGGAAACAAATCACTCTTGTAGATGATGATGGTGCCAAGTTGCAATTTCTGCTGTGGGGTGACCAGGTTGTCCTGGCAAATCTTTTCAGTGTGGGAAGTATGCTTGCACTGGATAAACCATATATTGCAAGTTCTGCAGACAGTGCTGCTGAAACAAGTGCTGAAGTTTCCCTTGAATTTGGTAGTGCAACACAATTGTTTTTGGTGCCTTTTGTTCAACACAAGGAACAAGTATGTGTATCACTGACACCAAGCCGCCATCAAGGATCAAGACTGCTAAGCACATTAGATCCCAGTCAGAGTACACAAGTTTCTCAAGTTTCCTTGCCCTGTGATTCACAAGGGTCTATTGATTTTAGTAGTTATCCTTTTCAATCCTACATTACCGATCTTCGTGACAAGATGACAGGCGTCAGCCTTTACGGTGTTGTTACAAGTATCATCAAAGAAAGATGTACTACAGAAGCTATCTTCTCATTGCAAATTGAAGATACCACTGGAACAATTTGGACTAAATTACATTTTGTGAAATATTGGTCACTGGGAAGATTAAGCCTTGGCCACACCGTCTACATATCAGGTCTGACATGCTCTATGAAAAAGCGGAAGGGGTTCCAACTAAACAGATGCCATGATGGCCTAGAAGCAATATGGTCCGAGAATACTGGTGGAGCTTCTTTCTTCAACCTTAGTAGCTTGCCAGCACTGCTAAACTCATCTTGTCTTCATAAACTAACAAAGCTCTCTGATCTGTCCAGCCAGGCTAGCTGTACTCAGATAGTTCATGTTCAGCTTGAAATGGTTCAATTTCATCTCAGTACAAGGTTGTCACATGCCGTATGTGGTCATTTTGTTACCGAGCAACCCATGGGAGTTTCTAAATGCAGCTTCTGTAATGAGAATTGTGATGAAGTAATTCGCACTTTCCTCCTGAAAATGACTCTTGCTGACAAGAGTGGGAAAGTTTTTGCATGGTGTACTGGTCATACTGCTACAGAGATCCTGCAAATATCTCCTGATGAATTCTTTGAACTACCTGAGGAAGAACAAGTTATCTATCCCGCTTCATTAGATAATGAGAGGTTCATGGTTGCAATTGTTAACTGCAAAAGGCAAGGTTCTGGACCTGGTGATGCTCTGGTGCTAGCAACTGAGGGAATCTCATGGGAGATTACTCGTGCACTGAAGTGCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

666

Amino Acids

73.74

Weight (kDa)

5.69

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC24_OB1 PF17246 16 - 142 4.8e-45 Cell division control protein 24, OB domain 1
CDC24_OB2 PF17245 148 - 277 3.5e-46 Cell division control protein 24, OB domain 2
CDC24_OB3 PF17244 398 - 625 2.2e-74 Cell division control protein 24, OB domain 3
Rep_fac-A_C PF08646 548 - 638 1e-06 Replication factor-A C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016702)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13410
fragaria_vesca FvH4_4g27250 FvH4_4g27250 FvH4_4g27250
malus_domestica MD15G1390900.v1.1
prunus_persica Prupe.1G312300_v2.0.a1
pyrus_communis pycom15g35000
rosa_chinensis RchiOBHm_Chr4g0435031
rosa_laevigata RLG00000006626
rosa_multiflora Rmu_sc0000400.1_g000012
rosa_roxburghii Rroxscaffold_5G00376240
rosa_rugosa Rorug04G0281900
rosa_samantha Rh4BG345300
rosa_wichuraiana Rw4G029410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 872
Acc36I ACCTGC 2 cut(s) 182, 480
AccB1I GGYRCC 4 cut(s) 419, 558, 836, 1009
AccBSI CCGCTC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 1374
AccII CGCG 1 cut(s) 206
AclI AACGTT 2 cut(s) 402, 729
AclWI GGATC 6 cut(s) 98, 111, 158, 1078, 1088, 1798
AcoI YGGCCR 2 cut(s) 201, 1363
AcsI RAATTY 4 cut(s) 50, 358, 980, 1826
AcuI CTGAAG 1 cut(s) 987
AcyI GRCGYC 1 cut(s) 1215
AdeI CACNNNGTG 1 cut(s) 558
AfaI GTAC 6 cut(s) 494, 1108, 1261, 1576, 1624, 1783
AfiI CCNNNNNNNGG 1 cut(s) 518
AjnI CCWGG 7 cut(s) 65, 415, 441, 867, 876, 1563, 1930
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AleI CACNNNNGTG 1 cut(s) 1990
Alw21I GWGCWC 4 cut(s) 461, 676, 762, 1987
Alw26I GTCTC 2 cut(s) 119, 594
Alw44I GTGCAC 1 cut(s) 1983
AlwI GGATC 6 cut(s) 98, 111, 158, 1078, 1088, 1798
AlwNI CAGNNNCTG 1 cut(s) 1695
AoxI GGCC 6 cut(s) 119, 201, 257, 766, 1363, 1441
ApaLI GTGCAC 1 cut(s) 1983
ApeKI GCWGC 6 cut(s) 177, 572, 575, 664, 950, 1689
ApoI RAATTY 4 cut(s) 50, 358, 980, 1826
Asp700I GAANNNNTTC 4 cut(s) 359, 1415, 1605, 1719
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 5 cut(s) 69, 119, 767, 1458, 1928
AsuHPI GGTGA 3 cut(s) 665, 875, 1946
AsuNHI GCTAGC 2 cut(s) 1568, 1948
AvaII GGWCC 3 cut(s) 69, 1458, 1928
AxyI CCTNAGG 1 cut(s) 1842
BaeGI GKGCMC 1 cut(s) 1987
BalI TGGCCA 1 cut(s) 1365
BamHI GGATCC 1 cut(s) 103
BanI GGYRCC 4 cut(s) 419, 558, 836, 1009
BanII GRGCYC 2 cut(s) 676, 762
BauI CACGAG 1 cut(s) 1980
BbsI GAAGAC 2 cut(s) 42, 1520
Bbv12I GWGCWC 4 cut(s) 461, 676, 762, 1987
BbvI GCAGC 6 cut(s) 189, 559, 562, 651, 937, 1701
BccI CCATC 5 cut(s) 570, 644, 827, 1071, 1433
BceAI ACGGC 2 cut(s) 216, 1625
BciT130I CCWGG 7 cut(s) 67, 417, 443, 869, 878, 1565, 1932
BcoDI GTCTC 2 cut(s) 119, 594
BfaI CTAG 5 cut(s) 623, 668, 1445, 1569, 1949
BfmI CTRYAG 4 cut(s) 175, 939, 1263, 1797
BfoI RGCGCY 1 cut(s) 183
BfuAI ACCTGC 2 cut(s) 182, 480
BglI GCCNNNNNGGC 1 cut(s) 1440
BglII AGATCT 1 cut(s) 543
BlpI GCTNAGC 1 cut(s) 1082
Bme1390I CCNGG 7 cut(s) 67, 417, 443, 869, 878, 1565, 1932
Bme18I GGWCC 3 cut(s) 69, 1458, 1928
BmgT120I GGNCC 5 cut(s) 69, 119, 767, 1458, 1928
BmiI GGNNCC 6 cut(s) 105, 421, 560, 838, 1011, 1418
BmrFI CCNGG 7 cut(s) 67, 417, 443, 869, 878, 1565, 1932
BmrI ACTGGG 2 cut(s) 1092, 1355
BmsI GCATC 4 cut(s) 646, 703, 1421, 1927
BmtI GCTAGC 2 cut(s) 1572, 1952
BmuI ACTGGG 2 cut(s) 1092, 1355
BoxI GACNNNNGTC 1 cut(s) 1214
BpiI GAAGAC 2 cut(s) 42, 1520
BplI GAGNNNNNCTC 2 cut(s) 1949, 1981
BpmI CTGGAG 2 cut(s) 172, 600
Bpu1102I GCTNAGC 1 cut(s) 1082
BpuEI CTTGAG 3 cut(s) 152, 512, 1104
Bsa29I ATCGAT 1 cut(s) 57
BsaBI GATNNNNATC 2 cut(s) 102, 477
BsaHI GRCGYC 1 cut(s) 1215
BsaI GGTCTC 2 cut(s) 119, 594
BsaJI CCNNGG 5 cut(s) 415, 441, 442, 1360, 1671
Bsc4I CCNNNNNNNGG 1 cut(s) 518
Bse1I ACTGG 7 cut(s) 777, 918, 1098, 1306, 1350, 1474, 1789
Bse21I CCTNAGG 1 cut(s) 1842
Bse3DI GCAATG 2 cut(s) 666, 1280
Bse8I GATNNNNATC 2 cut(s) 102, 477
BseBI CCWGG 7 cut(s) 67, 417, 443, 869, 878, 1565, 1932
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 5 cut(s) 415, 441, 442, 1360, 1671
BseGI GGATG 2 cut(s) 643, 649
BseJI GATNNNNATC 2 cut(s) 102, 477
BseLI CCNNNNNNNGG 1 cut(s) 518
BseMI GCAATG 2 cut(s) 666, 1280
BseMII CTCAG 5 cut(s) 689, 1592, 1633, 1833, 1947
BseNI ACTGG 7 cut(s) 777, 918, 1098, 1306, 1350, 1474, 1789
BseRI GAGGAG 3 cut(s) 35, 597, 688
BseSI GKGCMC 1 cut(s) 1987
BseX3I CGGCCG 1 cut(s) 201
BseXI GCAGC 6 cut(s) 189, 559, 562, 651, 937, 1701
BseYI CCCAGC 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 6 cut(s) 121, 203, 259, 768, 1365, 1443
BshNI GGYRCC 4 cut(s) 419, 558, 836, 1009
BshVI ATCGAT 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 204
BsiHKAI GWGCWC 4 cut(s) 461, 676, 762, 1987
BsiSI CCGG 2 cut(s) 122, 275
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 1 cut(s) 518
BsmAI GTCTC 2 cut(s) 119, 594
BsmFI GGGAC 1 cut(s) 461
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 6 cut(s) 121, 203, 259, 768, 1365, 1443
Bso31I GGTCTC 2 cut(s) 119, 594
Bsp1286I GDGCHC 4 cut(s) 461, 676, 762, 1987
Bsp1720I GCTNAGC 1 cut(s) 1082
Bsp19I CCATGG 1 cut(s) 1671
BspANI GGCC 6 cut(s) 121, 203, 259, 768, 1365, 1443
BspCNI CTCAG 5 cut(s) 688, 1591, 1632, 1834, 1948
BspDI ATCGAT 1 cut(s) 57
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 6 cut(s) 105, 421, 560, 838, 1011, 1418
BspMAI CTGCAG 2 cut(s) 179, 943
BspMI ACCTGC 2 cut(s) 182, 480
BspOI GCTAGC 2 cut(s) 1572, 1952
BspPI GGATC 6 cut(s) 98, 111, 158, 1078, 1088, 1798
BspT107I GGYRCC 4 cut(s) 419, 558, 836, 1009
BspTNI GGTCTC 2 cut(s) 119, 594
BsrBI CCGCTC 1 cut(s) 74
BsrDI GCAATG 2 cut(s) 666, 1280
BsrI ACTGG 7 cut(s) 777, 918, 1098, 1306, 1350, 1474, 1789
BssECI CCNNGG 5 cut(s) 415, 441, 442, 1360, 1671
BssNI GRCGYC 1 cut(s) 1215
BssSI CACGAG 1 cut(s) 1980
BssT1I CCWWGG 2 cut(s) 1360, 1671
Bst2BI CACGAG 1 cut(s) 1980
Bst2UI CCWGG 7 cut(s) 67, 417, 443, 869, 878, 1565, 1932
Bst4CI ACNGT 5 cut(s) 331, 606, 947, 1229, 1372
BstACI GRCGYC 1 cut(s) 1215
BstAPI GCANNNNNTGC 3 cut(s) 853, 938, 947
BstC8I GCNNGC 6 cut(s) 257, 909, 1502, 1506, 1570, 1950
BstDEI CTNAG 7 cut(s) 675, 1082, 1493, 1578, 1619, 1842, 1956
BstDSI CCRYGG 1 cut(s) 1671
BstEII GGTNACC 1 cut(s) 863
BstF5I GGATG 2 cut(s) 643, 649
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstMAI GTCTC 2 cut(s) 119, 594
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 8 cut(s) 71, 316, 853, 938, 947, 1440, 1510, 1569
BstNI CCWGG 7 cut(s) 67, 417, 443, 869, 878, 1565, 1932
BstNSI RCATGY 2 cut(s) 1395, 1640
BstPAI GACNNNNGTC 1 cut(s) 1214
BstPI GGTNACC 1 cut(s) 863
BstSCI CCNGG 7 cut(s) 65, 415, 441, 867, 876, 1563, 1930
BstSFI CTRYAG 4 cut(s) 175, 939, 1263, 1797
BstSLI GKGCMC 1 cut(s) 1987
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 6 cut(s) 189, 559, 562, 651, 937, 1701
BstV2I GAAGAC 2 cut(s) 42, 1520
BstX2I RGATCY 4 cut(s) 103, 543, 1093, 1803
BstYI RGATCY 4 cut(s) 103, 543, 1093, 1803
BstZI CGGCCG 1 cut(s) 201
Bsu15I ATCGAT 1 cut(s) 57
Bsu36I CCTNAGG 1 cut(s) 1842
BsuRI GGCC 6 cut(s) 121, 203, 259, 768, 1365, 1443
BsuTUI ATCGAT 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 1671
BtsCI GGATG 2 cut(s) 643, 649
BtsI GCAGTG 2 cut(s) 396, 1508
BveI ACCTGC 2 cut(s) 182, 480
Cac8I GCNNGC 6 cut(s) 257, 909, 1502, 1506, 1570, 1950
CaiI CAGNNNCTG 1 cut(s) 1695
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 5 cut(s) 69, 119, 767, 1458, 1928
ClaI ATCGAT 1 cut(s) 57
CseI GACGC 1 cut(s) 1204
CsiI ACCWGGT 2 cut(s) 867, 1930
Csp6I GTAC 6 cut(s) 493, 1107, 1260, 1575, 1623, 1782
CviQI GTAC 6 cut(s) 493, 1107, 1260, 1575, 1623, 1782
DdeI CTNAG 7 cut(s) 675, 1082, 1493, 1578, 1619, 1842, 1956
DraIII CACNNNGTG 1 cut(s) 558
DrdI GACNNNNNNGTC 1 cut(s) 872
DseDI GACNNNNNNGTC 1 cut(s) 872
EaeI YGGCCR 2 cut(s) 201, 1363
EagI CGGCCG 1 cut(s) 201
Ecl136II GAGCTC 2 cut(s) 674, 760
EclXI CGGCCG 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 1360, 1671
Eco147I AGGCCT 1 cut(s) 259
Eco24I GRGCYC 2 cut(s) 676, 762
Eco31I GGTCTC 2 cut(s) 119, 594
Eco47I GGWCC 3 cut(s) 69, 1458, 1928
Eco52I CGGCCG 1 cut(s) 201
Eco53kI GAGCTC 2 cut(s) 674, 760
Eco57I CTGAAG 1 cut(s) 987
Eco81I CCTNAGG 1 cut(s) 1842
Eco91I GGTNACC 1 cut(s) 863
EcoICRI GAGCTC 2 cut(s) 674, 760
EcoO65I GGTNACC 1 cut(s) 863
EcoRI GAATTC 1 cut(s) 1826
EcoRII CCWGG 7 cut(s) 65, 415, 441, 867, 876, 1563, 1930
EcoT14I CCWWGG 2 cut(s) 1360, 1671
EcoT22I ATGCAT 1 cut(s) 718
EcoT38I GRGCYC 2 cut(s) 676, 762
ErhI CCWWGG 2 cut(s) 1360, 1671
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 960, 992
FaqI GGGAC 1 cut(s) 461
FauI CCCGC 2 cut(s) 141, 1873
FblI GTMKAC 1 cut(s) 1374
FokI GGATG 2 cut(s) 650, 656
FriOI GRGCYC 2 cut(s) 676, 762
FspBI CTAG 5 cut(s) 623, 668, 1445, 1569, 1949
GlaI GCGC 1 cut(s) 181
GsaI CCCAGC 1 cut(s) 141
GsuI CTGGAG 2 cut(s) 172, 600
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 6 cut(s) 121, 203, 259, 768, 1365, 1443
HapII CCGG 2 cut(s) 122, 275
HgaI GACGC 1 cut(s) 1204
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 1215
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 2 cut(s) 400, 1906
HindII GTYRAC 2 cut(s) 400, 1906
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 9 cut(s) 14, 98, 163, 341, 523, 689, 1139, 1744, 1962
HpaI GTTAAC 1 cut(s) 1906
HpaII CCGG 2 cut(s) 122, 275
HphI GGTGA 3 cut(s) 665, 875, 1946
Hpy166II GTNNAC 6 cut(s) 400, 1109, 1375, 1782, 1906, 1985
Hpy188I TCNGA 9 cut(s) 103, 162, 220, 688, 1104, 1389, 1462, 1552, 1581
Hpy188III TCNNGA 8 cut(s) 169, 529, 710, 1074, 1199, 1735, 1820, 1926
Hpy8I GTNNAC 6 cut(s) 400, 1109, 1375, 1782, 1906, 1985
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 306, 531, 1405
HpyCH4III ACNGT 5 cut(s) 331, 606, 947, 1229, 1372
HpyCH4IV ACGT 2 cut(s) 402, 729
HpyF10VI GCNNNNNNNGC 8 cut(s) 71, 316, 853, 938, 947, 1440, 1510, 1569
HpyF3I CTNAG 7 cut(s) 675, 1082, 1493, 1578, 1619, 1842, 1956
HpySE526I ACGT 2 cut(s) 402, 729
Hsp92I GRCGYC 1 cut(s) 1215
HspAI GCGC 1 cut(s) 180
KspAI GTTAAC 1 cut(s) 1906
LmnI GCTCC 3 cut(s) 456, 671, 1475
Lsp1109I GCAGC 6 cut(s) 189, 559, 562, 651, 937, 1701
LweI GCATC 4 cut(s) 646, 703, 1421, 1927
MabI ACCWGGT 2 cut(s) 867, 1930
MaeI CTAG 5 cut(s) 623, 668, 1445, 1569, 1949
MaeII ACGT 2 cut(s) 402, 729
MaeIII GTNAC 8 cut(s) 196, 331, 863, 1199, 1234, 1341, 1632, 1657
MbiI CCGCTC 1 cut(s) 74
MfeI CAATTG 3 cut(s) 290, 998, 1899
MflI RGATCY 4 cut(s) 103, 543, 1093, 1803
MhlI GDGCHC 4 cut(s) 461, 676, 762, 1987
MlsI TGGCCA 1 cut(s) 1365
MluNI TGGCCA 1 cut(s) 1365
MlyI GAGTC 2 cut(s) 8, 1738
MmeI TCCRAC 3 cut(s) 363, 615, 1444
Mox20I TGGCCA 1 cut(s) 1365
Mph1103I ATGCAT 1 cut(s) 718
MroXI GAANNNNTTC 4 cut(s) 359, 1415, 1605, 1719
MscI TGGCCA 1 cut(s) 1365
MseI TTAA 3 cut(s) 1355, 1905, 1999
MslI CAYNNNNRTG 4 cut(s) 232, 431, 567, 1990
Msp20I TGGCCA 1 cut(s) 1365
MspA1I CMGCKG 2 cut(s) 141, 192
MspI CCGG 2 cut(s) 122, 275
MspR9I CCNGG 7 cut(s) 67, 417, 443, 869, 878, 1565, 1932
MunI CAATTG 3 cut(s) 290, 998, 1899
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 7 cut(s) 67, 417, 443, 869, 878, 1565, 1932
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 8 cut(s) 71, 316, 853, 938, 947, 1440, 1510, 1569
NcoI CCATGG 1 cut(s) 1671
NheI GCTAGC 2 cut(s) 1568, 1948
NlaIV GGNNCC 6 cut(s) 105, 421, 560, 838, 1011, 1418
NmuCI GTSAC 5 cut(s) 331, 863, 1199, 1341, 1632
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 2 cut(s) 1395, 1640
OliI CACNNNNGTG 1 cut(s) 1990
PasI CCCWGGG 1 cut(s) 442
PceI AGGCCT 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 598
PctI GAATGC 1 cut(s) 284
PdmI GAANNNNTTC 4 cut(s) 359, 1415, 1605, 1719
PfeI GAWTC 7 cut(s) 98, 163, 341, 523, 689, 1139, 1962
PleI GAGTC 2 cut(s) 8, 1738
PpsI GAGTC 2 cut(s) 8, 1738
PshAI GACNNNNGTC 1 cut(s) 1214
Psp124BI GAGCTC 2 cut(s) 676, 762
Psp1406I AACGTT 2 cut(s) 402, 729
Psp6I CCWGG 7 cut(s) 65, 415, 441, 867, 876, 1563, 1930
PspEI GGTNACC 1 cut(s) 863
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 7 cut(s) 65, 415, 441, 867, 876, 1563, 1930
PspN4I GGNNCC 6 cut(s) 105, 421, 560, 838, 1011, 1418
PspPI GGNCC 5 cut(s) 69, 119, 767, 1458, 1928
PstI CTGCAG 2 cut(s) 179, 943
PstNI CAGNNNCTG 1 cut(s) 1695
PsuI RGATCY 4 cut(s) 103, 543, 1093, 1803
PvuII CAGCTG 1 cut(s) 141
RsaI GTAC 6 cut(s) 494, 1108, 1261, 1576, 1624, 1783
RsaNI GTAC 6 cut(s) 493, 1107, 1260, 1575, 1623, 1782
RseI CAYNNNNRTG 4 cut(s) 232, 431, 567, 1990
SacI GAGCTC 2 cut(s) 676, 762
SaqAI TTAA 3 cut(s) 1355, 1905, 1999
Sau96I GGNCC 5 cut(s) 69, 119, 767, 1458, 1928
SchI GAGTC 2 cut(s) 8, 1738
ScrFI CCNGG 7 cut(s) 67, 417, 443, 869, 878, 1565, 1932
SduI GDGCHC 4 cut(s) 461, 676, 762, 1987
SexAI ACCWGGT 2 cut(s) 867, 1930
SfaNI GCATC 4 cut(s) 646, 703, 1421, 1927
SfcI CTRYAG 4 cut(s) 175, 939, 1263, 1797
SinI GGWCC 3 cut(s) 69, 1458, 1928
SmiMI CAYNNNNRTG 4 cut(s) 232, 431, 567, 1990
SmlI CTYRAG 3 cut(s) 167, 527, 1119
SmoI CTYRAG 3 cut(s) 167, 527, 1119
SseBI AGGCCT 1 cut(s) 259
SspI AATATT 1 cut(s) 1337
SspMI CTAG 5 cut(s) 623, 668, 1445, 1569, 1949
SstI GAGCTC 2 cut(s) 676, 762
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 7 cut(s) 65, 415, 441, 867, 876, 1563, 1930
StyI CCWWGG 2 cut(s) 1360, 1671
TaaI ACNGT 5 cut(s) 331, 606, 947, 1229, 1372
TaiI ACGT 2 cut(s) 405, 732
TaqI TCGA 5 cut(s) 12, 57, 90, 601, 781
TatI WGTACW 5 cut(s) 1106, 1259, 1574, 1622, 1781
TauI GCSGC 4 cut(s) 22, 195, 206, 1062
TfiI GAWTC 7 cut(s) 98, 163, 341, 523, 689, 1139, 1962
Tru1I TTAA 3 cut(s) 1355, 1905, 1999
Tru9I TTAA 3 cut(s) 1355, 1905, 1999
TseFI GTSAC 5 cut(s) 331, 863, 1199, 1341, 1632
TseI GCWGC 6 cut(s) 177, 572, 575, 664, 950, 1689
Tsp45I GTSAC 5 cut(s) 331, 863, 1199, 1341, 1632
TspGWI ACGGA 1 cut(s) 126
VneI GTGCAC 1 cut(s) 1983
VpaK11BI GGWCC 3 cut(s) 69, 1458, 1928
XapI RAATTY 4 cut(s) 50, 358, 980, 1826
XceI RCATGY 2 cut(s) 1395, 1640
XmiI GTMKAC 1 cut(s) 1374
XmnI GAANNNNTTC 4 cut(s) 359, 1415, 1605, 1719
XspI CTAG 5 cut(s) 623, 668, 1445, 1569, 1949
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.