Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008304

Physical Location & Seq

Genomic Coordinates Forward (+)

4751432 .. 4753018

Gene Structure 1587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTTGGGTTTTTCAAATCTCCGGGGAACAATAAACTTCCCAATGAATCATCAAACAACAAAGGAGGAACAATCACTGCAGGAAGAAGGACTTCTTCAGAACCAATCCTGATAACACCAGATTTCGACGATGACGACAAATACAAGAACGGTTTCAACGATTCTGGTGGTCTGCAGAGCCAAACGACAGAAGAATTAGAAAAATATGCAGTTTATAAAGCTGAAGAAACAACCAAAGGTGTTAATAATTGTCTTAAGATCGCTGAAGATATAAGATCAGATGGTGCAAGAACGCTCGAAATGTTGCATCAGCAAGGTGAACAAATCAACAGGACTCATGAAATGGCTGTTGATATGGATAAAGATCTCAGTCGGGGGGAGAAGCTTTTGAACAACTTAGGAGGAATGTTTTCAAAGCCATGGAAACCAAAGAAGACTAAAAATATCACAGGACCTATGATCACACCAGATAAACCGTCGAAGAAGAGCGAGAATCACAAGGAAGAGCGGGAGAAACTTGGTTTGGGTGCAAAAGGACGATCGAGCAGTCAACCAGCATTAGATCAACCAACAAATGCGTTGCAGAAAGTTGAGCAAGAGAAGGCAAAGCAAGACGATGGACTTTCAGATTTAAGTGACATATTGGGTGATCTTAAGAGCATGGCCGTTGATATGGGATCTGAGATCGACAAGCAAAACAAAGCTCTTGATCATCTCGGCGACGATGTTGATGAGCTTAACTCTCGTGTTCAAGGAGCTAATCAACGGGCACGTCACTTGCTTTCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0007049 GO:0008150 GO:0009504 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009612 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0022402 GO:0031224 GO:0032506 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051301 GO:0051704 GO:0051707 GO:0061024 GO:0061025 GO:0061640 GO:0071840 GO:0071944 GO:0097305 GO:1901700 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04130 ko04140 ko04721 ko04911 map04130 map04140 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

29.08

Weight (kDa)

5.84

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13890 AT1G13890
fragaria_vesca	FvH4_4g30390
malus_domestica	MD13G1064800.v1.1 MD16G1063400.v1.1
prunus_persica	Prupe.1G283300_v2.0.a1 Prupe.1G283300_v2.0.a1 Prupe.1G283300_v2.0.a1
pyrus_communis	pycom13g05720
rosa_chinensis	RchiOBHm_Chr4g0438681
rosa_laevigata	RLG00000006338
rosa_multiflora	Rmu_sc0000738.1_g000043 Rmu_sc0002505.1_g000003 Rmu_sc0012315.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379720
rosa_rugosa	Rorug04G0312700 Rorug04G0312700
rosa_samantha	Rh4AG363100 Rh4BG374500 Rh4CG388700 Rh4DG369000
rosa_wichuraiana	Rw0G007160 Rw0G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
AccBSI	CCGCTC	1 cut(s)	508
AciI	CCGC	1 cut(s)	508
AclWI	GGATC	1 cut(s)	685
AcoI	YGGCCR	1 cut(s)	663
AcuI	CTGAAG	3 cut(s)	81, 243, 285
AflII	CTTAAG	2 cut(s)	254, 653
AgsI	TTSAA	5 cut(s)	16, 157, 391, 414, 752
AjiI	CACGTC	1 cut(s)	773
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AluBI	AGCT	5 cut(s)	221, 385, 704, 736, 758
AluI	AGCT	5 cut(s)	221, 385, 704, 736, 758
AlwI	GGATC	1 cut(s)	685
AoxI	GGCC	1 cut(s)	663
Asp700I	GAANNNNTTC	3 cut(s)	91, 152, 409
AspS9I	GGNCC	1 cut(s)	452
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	329, 659
AvaII	GGWCC	1 cut(s)	452
BaeGI	GKGCMC	1 cut(s)	772
BauI	CACGAG	1 cut(s)	744
BbsI	GAAGAC	1 cut(s)	440
BccI	CCATC	2 cut(s)	275, 611
BceAI	ACGGC	1 cut(s)	650
BclI	TGATCA	2 cut(s)	459, 709
BcnI	CCSGG	1 cut(s)	24
BfmI	CTRYAG	2 cut(s)	78, 173
BfrI	CTTAAG	2 cut(s)	254, 653
BglII	AGATCT	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	452
BmgBI	CACGTC	1 cut(s)	773
BmgT120I	GGNCC	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	440
BplI	GAGNNNNNCTC	2 cut(s)	725, 757
BpuMI	CCSGG	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	23, 419
Bse8I	GATNNNNATC	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	23, 419
BseJI	GATNNNNATC	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	382, 672
BseSI	GKGCMC	1 cut(s)	772
Bsh1285I	CGRYCG	1 cut(s)	542
BshFI	GGCC	1 cut(s)	665
BsiEI	CGRYCG	1 cut(s)	542
BsiSI	CCGG	1 cut(s)	23
BsnI	GGCC	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	772
Bsp19I	CCATGG	1 cut(s)	419
BspACI	CCGC	1 cut(s)	508
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	2 cut(s)	381, 673
BspHI	TCATGA	1 cut(s)	337
BspMAI	CTGCAG	2 cut(s)	82, 177
BspPI	GGATC	1 cut(s)	685
BspQI	GCTCTTC	2 cut(s)	479, 498
BspTI	CTTAAG	2 cut(s)	254, 653
BsrBI	CCGCTC	1 cut(s)	508
BssECI	CCNNGG	2 cut(s)	23, 419
BssSI	CACGAG	1 cut(s)	744
BssT1I	CCWWGG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	744
Bst4CI	ACNGT	2 cut(s)	152, 477
Bst6I	CTCTTC	2 cut(s)	479, 498
BstAFI	CTTAAG	2 cut(s)	254, 653
BstDEI	CTNAG	3 cut(s)	368, 397, 681
BstDSI	CCRYGG	1 cut(s)	419
BstMCI	CGRYCG	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	2 cut(s)	78, 173
BstSLI	GKGCMC	1 cut(s)	772
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	2 cut(s)	364, 677
BstYI	RGATCY	2 cut(s)	364, 677
BsuRI	GGCC	1 cut(s)	665
BtgI	CCRYGG	1 cut(s)	419
BtrI	CACGTC	1 cut(s)	773
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
CciI	TCATGA	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	452
CviAII	CATG	3 cut(s)	338, 420, 661
CviJI	RGCY	9 cut(s)	180, 221, 347, 385, 418, 665, 704, 736, 758
CviKI_1	RGCY	9 cut(s)	180, 221, 347, 385, 418, 665, 704, 736, 758
DdeI	CTNAG	3 cut(s)	368, 397, 681
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	2 cut(s)	479, 498
EarI	CTCTTC	2 cut(s)	479, 498
Eco130I	CCWWGG	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	3 cut(s)	81, 243, 285
EcoO109I	RGGNCCY	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	3 cut(s)	341, 423, 664
FalI	AAGNNNNNCTT	4 cut(s)	76, 108, 79, 111
FatI	CATG	3 cut(s)	337, 419, 660
FauI	CCCGC	1 cut(s)	501
FbaI	TGATCA	2 cut(s)	459, 709
HaeIII	GGCC	1 cut(s)	665
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	3 cut(s)	341, 423, 664
HincII	GTYRAC	1 cut(s)	551
HindII	GTYRAC	1 cut(s)	551
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	4 cut(s)	47, 161, 334, 493
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	329, 659
Hpy166II	GTNNAC	2 cut(s)	320, 551
Hpy188I	TCNGA	4 cut(s)	100, 280, 628, 682
Hpy188III	TCNNGA	3 cut(s)	109, 338, 707
Hpy8I	GTNNAC	2 cut(s)	320, 551
Hpy99I	CGWCG	3 cut(s)	131, 481, 725
HpyAV	CCTTC	2 cut(s)	81, 595
HpyCH4III	ACNGT	2 cut(s)	152, 477
HpyCH4IV	ACGT	1 cut(s)	772
HpyCH4V	TGCA	7 cut(s)	80, 175, 209, 287, 307, 530, 583
HpyF3I	CTNAG	3 cut(s)	368, 397, 681
HpySE526I	ACGT	1 cut(s)	772
Hsp92II	CATG	3 cut(s)	341, 423, 664
Ksp22I	TGATCA	2 cut(s)	459, 709
LguI	GCTCTTC	2 cut(s)	479, 498
LmnI	GCTCC	1 cut(s)	755
LpnPI	CCDG	9 cut(s)	36, 66, 122, 132, 150, 316, 435, 480, 567
LweI	GCATC	1 cut(s)	316
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	2 cut(s)	635, 773
MbiI	CCGCTC	1 cut(s)	508
MboII	GAAGA	9 cut(s)	87, 96, 203, 236, 278, 445, 493, 496, 515
MflI	RGATCY	2 cut(s)	364, 677
MhlI	GDGCHC	1 cut(s)	772
MluCI	AATT	2 cut(s)	194, 247
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	2 cut(s)	59, 395
MroXI	GAANNNNTTC	3 cut(s)	91, 152, 409
MseI	TTAA	5 cut(s)	243, 255, 632, 654, 738
MspCI	CTTAAG	2 cut(s)	254, 653
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	24
NciI	CCSGG	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	419
NlaIII	CATG	3 cut(s)	341, 423, 664
NmeAIII	GCCGAG	1 cut(s)	696
NmuCI	GTSAC	2 cut(s)	635, 773
PagI	TCATGA	1 cut(s)	337
PciSI	GCTCTTC	2 cut(s)	479, 498
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 156
PdmI	GAANNNNTTC	3 cut(s)	91, 152, 409
PfeI	GAWTC	3 cut(s)	47, 161, 493
Ple19I	CGATCG	1 cut(s)	542
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	452
PsiI	TTATAA	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	452
PspPI	GGNCC	1 cut(s)	452
PspPPI	RGGWCCY	1 cut(s)	452
PstI	CTGCAG	2 cut(s)	82, 177
PsuI	RGATCY	2 cut(s)	364, 677
PvuI	CGATCG	1 cut(s)	542
SapI	GCTCTTC	2 cut(s)	479, 498
SaqAI	TTAA	5 cut(s)	243, 255, 632, 654, 738
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	772
SetI	ASST	9 cut(s)	223, 241, 319, 387, 457, 706, 738, 760, 775
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	2 cut(s)	78, 173
SinI	GGWCC	1 cut(s)	452
SmlI	CTYRAG	2 cut(s)	254, 653
SmoI	CTYRAG	2 cut(s)	254, 653
Sse9I	AATT	2 cut(s)	194, 247
SsiI	CCGC	1 cut(s)	508
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	2 cut(s)	152, 477
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	5 cut(s)	126, 297, 479, 542, 687
TasI	AATT	2 cut(s)	194, 247
TfiI	GAWTC	3 cut(s)	47, 161, 493
Tru1I	TTAA	5 cut(s)	243, 255, 632, 654, 738
Tru9I	TTAA	5 cut(s)	243, 255, 632, 654, 738
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	2 cut(s)	635, 773
Tsp45I	GTSAC	2 cut(s)	635, 773
TspDTI	ATGAA	2 cut(s)	60, 354
TspRI	CASTG	1 cut(s)	82
Vha464I	CTTAAG	2 cut(s)	254, 653
VpaK11BI	GGWCC	1 cut(s)	452
XmnI	GAANNNNTTC	3 cut(s)	91, 152, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.