Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008304

Physical Location & Seq

Genomic Coordinates Forward (+)

3777300 .. 3778453

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05720.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTTTGGGTTTAAGAAATCGCCTGCAAAGATTGGAAAGCAAGGTTCTGTAGACCCAGGTTTTCAAGCTGATTCAGACGCAGGGAAGAACACGTTTAACCCCGCGAGAAGAACTTCTTCCGAACCTATGCTTATCACCCCGGATTTCAGTAACGAAAAAAAACCATTAGAGCAGCAGAGTATGCAAGAGTTAGAGAAATATGCTGTTAACAAGTCCGAGGAGACAACAAAAAGTGTCAACAATTGCCTCAGGATTGCAGAGGACATCAGAGGGGATGCTACAAGGACCCTTGACATGTTGCACCAGCAGGGTGAGCAAATTACAAGGACTCACATGGCGGCTGTTGATATCGATAAGGATTTGAGTCGGGGTGAGAAGATTTTAAACAATCTTGGAGGCATGTTCTCAATGCCTTGGAAGCCGAAGAAGACCAAGGATATTTCGGGACCCGATCTGTCATTAGCTTCTGCAACCAAAAAAGCTGATCCACAGCAGAGGGAAAAGTTGGGTTTAGGTCCGAAAGGGCGGTCAGCTCCTGCGACGCCTCCTCCGGAAGGCTCAGGTGCCATGCAGAAAGTCGAGTGTGAGAAGGCAAAGCAAGATGATGGACTTTCAGATCTAAGTAACATTTTGGGGGATTTGAAGGGTATGGCTATGGACATGGGAAATGAACTCGACAGTAATTTGGAAAAATGCAGGCAAAACAAAGCCATCGATAATCTCTCTGACGATATTGATGAGGTTAACTCTCGAGTGAAAGGTGCCAATCAACGTACACGCCGTTTGCTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04721 ko04911 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

28.98

Weight (kDa)

6.78

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13890 AT1G13890
fragaria_vesca	FvH4_4g30390
malus_domestica	MD13G1064800.v1.1 MD16G1063400.v1.1
prunus_persica	Prupe.1G283300_v2.0.a1 Prupe.1G283300_v2.0.a1 Prupe.1G283300_v2.0.a1
pyrus_communis	pycom13g05720
rosa_chinensis	RchiOBHm_Chr4g0438681
rosa_laevigata	RLG00000006338
rosa_multiflora	Rmu_sc0000738.1_g000043 Rmu_sc0002505.1_g000003 Rmu_sc0012315.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379720
rosa_rugosa	Rorug04G0312700 Rorug04G0312700
rosa_samantha	Rh4AG363100 Rh4BG374500 Rh4CG388700 Rh4DG369000
rosa_wichuraiana	Rw0G007160 Rw0G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	563, 761
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	1 cut(s)	104
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	3 cut(s)	102, 338, 526
AclWI	GGATC	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	542
AfaI	GTAC	1 cut(s)	775
AfiI	CCNNNNNNNGG	1 cut(s)	554
AflIII	ACRYGT	2 cut(s)	90, 294
AgsI	TTSAA	2 cut(s)	65, 643
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	4 cut(s)	68, 464, 482, 533
AluI	AGCT	4 cut(s)	68, 464, 482, 533
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	536
Ama87I	CYCGRG	2 cut(s)	750, 788
Aor13HI	TCCGGA	1 cut(s)	550
ApeKI	GCWGC	1 cut(s)	172
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
Asp700I	GAANNNNTTC	2 cut(s)	112, 115
AspS9I	GGNCC	3 cut(s)	285, 446, 515
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	3 cut(s)	127, 323, 383
AvaI	CYCGRG	2 cut(s)	750, 788
AvaII	GGWCC	3 cut(s)	285, 446, 515
AxyI	CCTNAGG	1 cut(s)	248
BanI	GGYRCC	2 cut(s)	563, 761
BbsI	GAAGAC	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	2 cut(s)	599, 719
BceAI	ACGGC	1 cut(s)	765
BciT130I	CCWGG	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	48
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	2 cut(s)	173, 339
BlsI	GCNGC	2 cut(s)	174, 340
Bme1390I	CCNGG	2 cut(s)	57, 140
Bme18I	GGWCC	3 cut(s)	285, 446, 515
BmeT110I	CYCGRG	2 cut(s)	750, 788
BmgT120I	GGNCC	3 cut(s)	285, 446, 515
BmiI	GGNNCC	5 cut(s)	287, 447, 448, 565, 763
BmrFI	CCNGG	2 cut(s)	57, 140
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	434
BplI	GAGNNNNNCTC	2 cut(s)	731, 763
Bpu10I	CCTNAGC	1 cut(s)	559
BpuMI	CCSGG	1 cut(s)	140
Bsa29I	ATCGAT	2 cut(s)	351, 714
BsaHI	GRCGYC	1 cut(s)	542
BsaJI	CCNNGG	5 cut(s)	55, 138, 216, 413, 432
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	2 cut(s)	532, 562
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse21I	CCTNAGG	1 cut(s)	248
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	57
BseCI	ATCGAT	2 cut(s)	351, 714
BseDI	CCNNGG	5 cut(s)	55, 138, 216, 413, 432
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMII	CTCAG	2 cut(s)	262, 573
BseRI	GAGGAG	2 cut(s)	233, 537
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	104
BshNI	GGYRCC	2 cut(s)	563, 761
BshVI	ATCGAT	2 cut(s)	351, 714
BsiHKCI	CYCGRG	2 cut(s)	750, 788
BsiSI	CCGG	2 cut(s)	140, 551
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	459
BsoBI	CYCGRG	2 cut(s)	750, 788
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	3 cut(s)	451, 484, 616
BspACI	CCGC	3 cut(s)	102, 338, 526
BspCNI	CTCAG	2 cut(s)	261, 572
BspDI	ATCGAT	2 cut(s)	351, 714
BspEI	TCCGGA	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	5 cut(s)	287, 447, 448, 565, 763
BspPI	GGATC	1 cut(s)	479
BspT107I	GGYRCC	2 cut(s)	563, 761
BssECI	CCNNGG	5 cut(s)	55, 138, 216, 413, 432
BssMI	GATC	3 cut(s)	451, 484, 616
BssNI	GRCGYC	1 cut(s)	542
BssT1I	CCWWGG	2 cut(s)	413, 432
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	680
BstACI	GRCGYC	1 cut(s)	542
BstAPI	GCANNNNNTGC	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	24, 698
BstDEI	CTNAG	3 cut(s)	248, 559, 620
BstENI	CCTNNNNNAGG	1 cut(s)	552
BstF5I	GGATG	1 cut(s)	280
BstFNI	CGCG	1 cut(s)	104
BstKTI	GATC	3 cut(s)	454, 487, 619
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	3 cut(s)	451, 484, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 313, 418
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	2 cut(s)	298, 403
BstSCI	CCNGG	2 cut(s)	55, 138
BstSFI	CTRYAG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
Bsu15I	ATCGAT	2 cut(s)	351, 714
Bsu36I	CCTNAGG	1 cut(s)	248
BsuTUI	ATCGAT	2 cut(s)	351, 714
BtsCI	GGATG	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	24, 698
CaiI	CAGNNNCTG	1 cut(s)	536
Cfr13I	GGNCC	3 cut(s)	285, 446, 515
ClaI	ATCGAT	2 cut(s)	351, 714
CseI	GACGC	2 cut(s)	86, 550
Csp6I	GTAC	1 cut(s)	774
CviAII	CATG	5 cut(s)	295, 334, 400, 568, 661
CviJI	RGCY	9 cut(s)	68, 341, 421, 464, 482, 533, 558, 653, 710
CviKI_1	RGCY	9 cut(s)	68, 341, 421, 464, 482, 533, 558, 653, 710
CviQI	GTAC	1 cut(s)	774
DdeI	CTNAG	3 cut(s)	248, 559, 620
DpnI	GATC	3 cut(s)	453, 486, 618
DpnII	GATC	3 cut(s)	451, 484, 616
DraI	TTTAAA	1 cut(s)	384
Eco130I	CCWWGG	2 cut(s)	413, 432
Eco32I	GATATC	1 cut(s)	349
Eco47I	GGWCC	3 cut(s)	285, 446, 515
Eco81I	CCTNAGG	1 cut(s)	248
Eco88I	CYCGRG	2 cut(s)	750, 788
EcoNI	CCTNNNNNAGG	1 cut(s)	552
EcoO109I	RGGNCCY	2 cut(s)	285, 446
EcoRII	CCWGG	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	2 cut(s)	413, 432
ErhI	CCWWGG	2 cut(s)	413, 432
FaeI	CATG	5 cut(s)	298, 337, 403, 571, 664
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	5 cut(s)	294, 333, 399, 567, 660
FauI	CCCGC	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	173, 339
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	173, 339
GluI	GCNGC	2 cut(s)	173, 339
HapII	CCGG	2 cut(s)	140, 551
HgaI	GACGC	2 cut(s)	86, 550
Hin1I	GRCGYC	1 cut(s)	542
Hin1II	CATG	5 cut(s)	298, 337, 403, 571, 664
HincII	GTYRAC	3 cut(s)	208, 238, 745
HindII	GTYRAC	3 cut(s)	208, 238, 745
HinfI	GANTC	3 cut(s)	71, 328, 364
HpaI	GTTAAC	2 cut(s)	208, 745
HpaII	CCGG	2 cut(s)	140, 551
HphI	GGTGA	3 cut(s)	127, 323, 383
Hpy166II	GTNNAC	5 cut(s)	52, 208, 238, 745, 776
Hpy188I	TCNGA	7 cut(s)	76, 121, 217, 269, 519, 616, 727
Hpy188III	TCNNGA	4 cut(s)	250, 444, 551, 750
Hpy8I	GTNNAC	5 cut(s)	52, 208, 238, 745, 776
Hpy99I	CGWCG	1 cut(s)	544
HpyAV	CCTTC	3 cut(s)	548, 583, 637
HpyCH4III	ACNGT	1 cut(s)	680
HpyCH4IV	ACGT	2 cut(s)	92, 772
HpyCH4V	TGCA	7 cut(s)	26, 184, 257, 301, 470, 571, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 313, 418
HpyF3I	CTNAG	3 cut(s)	248, 559, 620
HpySE526I	ACGT	2 cut(s)	92, 772
Hsp92I	GRCGYC	1 cut(s)	542
Hsp92II	CATG	5 cut(s)	298, 337, 403, 571, 664
KflI	GGGWCCC	1 cut(s)	446
Kpn2I	TCCGGA	1 cut(s)	550
KspAI	GTTAAC	2 cut(s)	208, 745
Kzo9I	GATC	3 cut(s)	451, 484, 616
LmnI	GCTCC	1 cut(s)	538
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	2 cut(s)	92, 772
MaeIII	GTNAC	2 cut(s)	149, 623
MalI	GATC	3 cut(s)	453, 486, 618
MboI	GATC	3 cut(s)	451, 484, 616
MboII	GAAGA	6 cut(s)	97, 108, 120, 388, 436, 439
MfeI	CAATTG	1 cut(s)	241
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	3 cut(s)	241, 318, 682
MlyI	GAGTC	2 cut(s)	322, 373
MnlI	CCTC	9 cut(s)	211, 253, 257, 263, 389, 489, 555, 558, 733
MroI	TCCGGA	1 cut(s)	550
MroXI	GAANNNNTTC	2 cut(s)	112, 115
MseI	TTAA	5 cut(s)	12, 96, 207, 383, 744
MspI	CCGG	2 cut(s)	140, 551
MspR9I	CCNGG	2 cut(s)	57, 140
MunI	CAATTG	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	3 cut(s)	181, 313, 418
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	3 cut(s)	451, 484, 616
NlaIII	CATG	5 cut(s)	298, 337, 403, 571, 664
NlaIV	GGNNCC	5 cut(s)	287, 447, 448, 565, 763
NspI	RCATGY	2 cut(s)	298, 403
PaeR7I	CTCGAG	2 cut(s)	750, 788
PciI	ACATGT	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	778
PdmI	GAANNNNTTC	2 cut(s)	112, 115
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	174, 340
PleI	GAGTC	2 cut(s)	322, 372
PpsI	GAGTC	2 cut(s)	322, 372
PpuMI	RGGWCCY	2 cut(s)	285, 446
PscI	ACATGT	1 cut(s)	294
Psp5II	RGGWCCY	2 cut(s)	285, 446
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	5 cut(s)	287, 447, 448, 565, 763
PspPI	GGNCC	3 cut(s)	285, 446, 515
PspPPI	RGGWCCY	2 cut(s)	285, 446
PspXI	VCTCGAGB	1 cut(s)	788
PstNI	CAGNNNCTG	1 cut(s)	536
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	1 cut(s)	775
RsaNI	GTAC	1 cut(s)	774
SaqAI	TTAA	5 cut(s)	12, 96, 207, 383, 744
SatI	GCNGC	2 cut(s)	173, 339
Sau3AI	GATC	3 cut(s)	451, 484, 616
Sau96I	GGNCC	3 cut(s)	285, 446, 515
SchI	GAGTC	2 cut(s)	322, 373
ScrFI	CCNGG	2 cut(s)	57, 140
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	48
Sfr274I	CTCGAG	2 cut(s)	750, 788
SinI	GGWCC	3 cut(s)	285, 446, 515
SlaI	CTCGAG	2 cut(s)	750, 788
SmlI	CTYRAG	2 cut(s)	750, 788
SmoI	CTYRAG	2 cut(s)	750, 788
Sse9I	AATT	3 cut(s)	241, 318, 682
SsiI	CCGC	3 cut(s)	102, 338, 526
StyD4I	CCNGG	2 cut(s)	55, 138
StyI	CCWWGG	2 cut(s)	413, 432
TaaI	ACNGT	1 cut(s)	680
TaiI	ACGT	2 cut(s)	95, 775
TaqI	TCGA	6 cut(s)	351, 579, 675, 714, 751, 789
TasI	AATT	3 cut(s)	241, 318, 682
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	5 cut(s)	12, 96, 207, 383, 744
Tru9I	TTAA	5 cut(s)	12, 96, 207, 383, 744
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	684
VpaK11BI	GGWCC	3 cut(s)	285, 446, 515
XagI	CCTNNNNNAGG	1 cut(s)	552
XceI	RCATGY	2 cut(s)	298, 403
XhoI	CTCGAG	2 cut(s)	750, 788
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	2 cut(s)	112, 115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.