Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008304

Physical Location & Seq

Genomic Coordinates Reverse (-)

28539592 .. 28541920

Gene Structure 2329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G283300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTTTGGGTTTAAGAAATCACCAGCAAAAATTGCTAAGCAAAACTCTGTAGACCCGGGATTTCAAGCTCCTGCTGATTCAGAAACTGATAAGGACACTCATAAGCCTGCAAGACGAACTTCTTCCGAACCGATGCTTATAACCCCGGATTTTAGTAAAGAAAAGCCTGGTAAAAGAGGGTCTTCGCCTGCTTCCTACAAGAATGATTTTCTTGACTCGGGGGGGATAGAGAACCAGAGTGTGCAAGAGTTGGAGAAATATGCTGTGTACAAGGCTGAGGAGACTACACAGAGTGTCAACAACTGCCTCAGGATTGCTGAGAACATCAGAGAGGATGCTACAAAGACCCTTGACATGTTGCATGCGCAGGGTGAGCAAATTACAAGGACCCACATGGCGGCTGTCGATATAGATAAGGATTTGAGTCGGGGTGAGAAGCTTTTAAATAATCTCGGGGGTATGTTCGCAATGCCTTGGAAGGCAAAGAAGGGGAAGGATATTTCTGGGCCTGATTTTTCAGCAGCTTCTGCACCCAAAAAGAGTGACCCCCATCAGAGGGAAAAGTTGGGTTTAGCTCCTATACCCAAAGGAAGGTCGGCTCCTGCGACATCTCCTCCTGATGGTTCAGGTGCCTTGCAGCAAGTTGAGTATGAGAAGGCAAAGCAAGATGATGCTCTTTCAGACCTGAGTAATATTTTGGGTGATTTGAAGGGTATGGCTGTGGACATGGGAAGTGAACTTGACAGGTCAATATCATTCTTCTACTCTCTGCACATTCTTCATGACTGCATCTATATCTCTACGTTGTTGTTAAGTAATATATGGAAACTGCAGGCAAAACAAAACTATCGATCATCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04721 ko04911 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

31.51

Weight (kDa)

7.02

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13890 AT1G13890
fragaria_vesca	FvH4_4g30390
malus_domestica	MD13G1064800.v1.1 MD16G1063400.v1.1
prunus_persica	Prupe.1G283300_v2.0.a1 Prupe.1G283300_v2.0.a1 Prupe.1G283300_v2.0.a1
pyrus_communis	pycom13g05720
rosa_chinensis	RchiOBHm_Chr4g0438681
rosa_laevigata	RLG00000006338
rosa_multiflora	Rmu_sc0000738.1_g000043 Rmu_sc0002505.1_g000003 Rmu_sc0012315.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379720
rosa_rugosa	Rorug04G0312700 Rorug04G0312700
rosa_samantha	Rh4AG363100 Rh4BG374500 Rh4CG388700 Rh4DG369000
rosa_wichuraiana	Rw0G007160 Rw0G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
Acc16I	TGCGCA	1 cut(s)	366
AccB1I	GGYRCC	1 cut(s)	629
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	1 cut(s)	398
AdeI	CACNNNGTG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	5 cut(s)	397, 555, 556, 591, 620
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	65, 709
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	4 cut(s)	68, 439, 524, 575
AluI	AGCT	4 cut(s)	68, 439, 524, 575
Alw26I	GTCTC	1 cut(s)	275
AlwNI	CAGNNNCTG	2 cut(s)	86, 527
Ama87I	CYCGRG	3 cut(s)	55, 217, 452
AoxI	GGCC	1 cut(s)	506
ApeKI	GCWGC	2 cut(s)	521, 637
Asp700I	GAANNNNTTC	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	2 cut(s)	387, 506
AsuC2I	CCSGG	3 cut(s)	56, 57, 146
AsuHPI	GGTGA	4 cut(s)	12, 383, 443, 713
AvaI	CYCGRG	3 cut(s)	55, 217, 452
AvaII	GGWCC	1 cut(s)	387
AxyI	CCTNAGG	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	629
BbsI	GAAGAC	1 cut(s)	174
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	533, 649
BccI	CCATC	2 cut(s)	558, 614
BciT130I	CCWGG	1 cut(s)	168
BcnI	CCSGG	3 cut(s)	56, 57, 146
BcoDI	GTCTC	1 cut(s)	275
BfmI	CTRYAG	2 cut(s)	48, 830
BisI	GCNGC	3 cut(s)	399, 522, 638
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	3 cut(s)	400, 523, 639
Bme1390I	CCNGG	4 cut(s)	56, 57, 146, 168
Bme18I	GGWCC	1 cut(s)	387
BmeT110I	CYCGRG	3 cut(s)	55, 217, 452
BmgT120I	GGNCC	2 cut(s)	387, 506
BmiI	GGNNCC	3 cut(s)	389, 600, 631
BmrFI	CCNGG	4 cut(s)	56, 57, 146, 168
BmsI	GCATC	4 cut(s)	123, 325, 661, 798
BpiI	GAAGAC	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuMI	CCSGG	3 cut(s)	56, 57, 146
Bsa29I	ATCGAT	1 cut(s)	850
BsaJI	CCNNGG	3 cut(s)	55, 144, 473
BsaXI	ACNNNNNCTCC	2 cut(s)	598, 628
Bsc4I	CCNNNNNNNGG	5 cut(s)	397, 555, 556, 591, 620
Bse21I	CCTNAGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	850
BseDI	CCNNGG	3 cut(s)	55, 144, 473
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	5 cut(s)	397, 555, 556, 591, 620
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	4 cut(s)	267, 309, 322, 677
BseRI	GAGGAG	2 cut(s)	293, 603
BseXI	GCAGC	2 cut(s)	533, 649
BsgI	GTGCAG	2 cut(s)	513, 755
BshFI	GGCC	1 cut(s)	508
BshNI	GGYRCC	1 cut(s)	629
BshVI	ATCGAT	1 cut(s)	850
BsiHKCI	CYCGRG	3 cut(s)	55, 217, 452
BsiSI	CCGG	2 cut(s)	56, 146
BslI	CCNNNNNNNGG	5 cut(s)	397, 555, 556, 591, 620
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	508
BsoBI	CYCGRG	3 cut(s)	55, 217, 452
Bsp1407I	TGTACA	1 cut(s)	267
Bsp143I	GATC	1 cut(s)	851
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	508
BspCNI	CTCAG	4 cut(s)	268, 310, 321, 678
BspDI	ATCGAT	1 cut(s)	850
BspHI	TCATGA	1 cut(s)	781
BspLI	GGNNCC	3 cut(s)	389, 600, 631
BspMAI	CTGCAG	1 cut(s)	834
BspT107I	GGYRCC	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	474
BsrGI	TGTACA	1 cut(s)	267
BssECI	CCNNGG	3 cut(s)	55, 144, 473
BssMI	GATC	1 cut(s)	851
BssT1I	CCWWGG	1 cut(s)	473
Bst2UI	CCWGG	1 cut(s)	168
BstAPI	GCANNNNNTGC	2 cut(s)	32, 527
BstAUI	TGTACA	1 cut(s)	267
BstC8I	GCNNGC	4 cut(s)	108, 189, 363, 834
BstDEI	CTNAG	5 cut(s)	36, 276, 308, 318, 686
BstF5I	GGATG	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	1 cut(s)	854
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	851
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 373, 527
BstNI	CCWGG	1 cut(s)	168
BstNSI	RCATGY	2 cut(s)	358, 365
BstSCI	CCNGG	4 cut(s)	54, 55, 144, 166
BstSFI	CTRYAG	2 cut(s)	48, 830
BstV1I	GCAGC	2 cut(s)	533, 649
BstV2I	GAAGAC	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	850
Bsu36I	CCTNAGG	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	508
BsuTUI	ATCGAT	1 cut(s)	850
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	4 cut(s)	108, 189, 363, 834
CaiI	CAGNNNCTG	2 cut(s)	86, 527
CciI	TCATGA	1 cut(s)	781
CfoI	GCGC	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	387, 506
Cfr9I	CCCGGG	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	850
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	5 cut(s)	355, 362, 394, 727, 782
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	5 cut(s)	36, 276, 308, 318, 686
DpnI	GATC	1 cut(s)	853
DpnII	GATC	1 cut(s)	851
DraI	TTTAAA	1 cut(s)	444
DraIII	CACNNNGTG	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	308
Eco88I	CYCGRG	3 cut(s)	55, 217, 452
EcoO109I	RGGNCCY	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	5 cut(s)	358, 365, 397, 730, 785
FalI	AAGNNNNNCTT	4 cut(s)	103, 135, 166, 198
FatI	CATG	5 cut(s)	354, 361, 393, 726, 781
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	399, 522, 638
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	3 cut(s)	399, 522, 638
FspI	TGCGCA	1 cut(s)	366
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	3 cut(s)	399, 522, 638
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	2 cut(s)	56, 146
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	5 cut(s)	358, 365, 397, 730, 785
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	3 cut(s)	77, 215, 424
HpaII	CCGG	2 cut(s)	56, 146
HphI	GGTGA	4 cut(s)	12, 383, 443, 713
Hpy166II	GTNNAC	5 cut(s)	52, 268, 298, 724, 737
Hpy188I	TCNGA	6 cut(s)	82, 127, 329, 555, 682, 863
Hpy188III	TCNNGA	4 cut(s)	212, 310, 617, 782
Hpy8I	GTNNAC	5 cut(s)	52, 268, 298, 724, 737
HpyAV	CCTTC	6 cut(s)	472, 481, 487, 585, 649, 703
HpyCH4IV	ACGT	1 cut(s)	803
HpyCH4V	TGCA	8 cut(s)	110, 244, 361, 530, 637, 772, 789, 832
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 373, 527
HpyF3I	CTNAG	5 cut(s)	36, 276, 308, 318, 686
HpySE526I	ACGT	1 cut(s)	803
Hsp92II	CATG	5 cut(s)	358, 365, 397, 730, 785
HspAI	GCGC	1 cut(s)	365
Kzo9I	GATC	1 cut(s)	851
LmnI	GCTCC	3 cut(s)	73, 580, 604
Lsp1109I	GCAGC	2 cut(s)	533, 649
LweI	GCATC	4 cut(s)	123, 325, 661, 798
MaeII	ACGT	1 cut(s)	803
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	1 cut(s)	853
MboI	GATC	1 cut(s)	851
MboII	GAAGA	4 cut(s)	114, 174, 751, 770
MluCI	AATT	2 cut(s)	30, 378
MlyI	GAGTC	2 cut(s)	209, 433
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	6 cut(s)	170, 271, 317, 325, 549, 624
MroXI	GAANNNNTTC	1 cut(s)	121
MseI	TTAA	3 cut(s)	12, 443, 812
MspI	CCGG	2 cut(s)	56, 146
MspR9I	CCNGG	4 cut(s)	56, 57, 146, 168
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	32, 373, 527
NciI	CCSGG	3 cut(s)	56, 57, 146
NdeII	GATC	1 cut(s)	851
NlaIII	CATG	5 cut(s)	358, 365, 397, 730, 785
NlaIV	GGNNCC	3 cut(s)	389, 600, 631
NmuCI	GTSAC	1 cut(s)	542
NsbI	TGCGCA	1 cut(s)	366
NspI	RCATGY	2 cut(s)	358, 365
PaeI	GCATGC	1 cut(s)	365
PagI	TCATGA	1 cut(s)	781
PciI	ACATGT	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	602
PdmI	GAANNNNTTC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	400, 523, 639
PleI	GAGTC	2 cut(s)	209, 432
PpsI	GAGTC	2 cut(s)	209, 432
PpuMI	RGGWCCY	1 cut(s)	387
PscI	ACATGT	1 cut(s)	354
PsiI	TTATAA	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	3 cut(s)	389, 600, 631
PspPI	GGNCC	2 cut(s)	387, 506
PspPPI	RGGWCCY	1 cut(s)	387
PstI	CTGCAG	1 cut(s)	834
PstNI	CAGNNNCTG	2 cut(s)	86, 527
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	3 cut(s)	12, 443, 812
SatI	GCNGC	3 cut(s)	399, 522, 638
Sau3AI	GATC	1 cut(s)	851
Sau96I	GGNCC	2 cut(s)	387, 506
SchI	GAGTC	2 cut(s)	209, 433
ScrFI	CCNGG	4 cut(s)	56, 57, 146, 168
SetI	ASST	9 cut(s)	70, 441, 526, 577, 596, 631, 687, 749, 806
SfaNI	GCATC	4 cut(s)	123, 325, 661, 798
SfcI	CTRYAG	2 cut(s)	48, 830
SinI	GGWCC	1 cut(s)	387
SmaI	CCCGGG	1 cut(s)	57
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	2 cut(s)	30, 378
SsiI	CCGC	1 cut(s)	398
SspI	AATATT	1 cut(s)	694
StyD4I	CCNGG	4 cut(s)	54, 55, 144, 166
StyI	CCWWGG	1 cut(s)	473
TaiI	ACGT	1 cut(s)	806
TaqI	TCGA	2 cut(s)	405, 850
TasI	AATT	2 cut(s)	30, 378
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	401
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	3 cut(s)	12, 443, 812
Tru9I	TTAA	3 cut(s)	12, 443, 812
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	2 cut(s)	521, 637
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	1 cut(s)	770
TspMI	CCCGGG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	387
XceI	RCATGY	2 cut(s)	358, 365
XmaI	CCCGGG	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.