Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008304

Physical Location & Seq

Genomic Coordinates Forward (+)

30047925 .. 30049979

Gene Structure 2055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTTTGGGTTTATGAAATCCCCTGCTAAGATTGCAAAGCAAAGTTCTGTAGACCCAGGAGCTCTTGATCCAGCAACTAAATCCGATGGGGCTAAGATTACCCCAGCGAGACGAACTAGTTCTGAACCCGTGCTCATCACCCCAGACATGGGTGATGAGAAACATGGTAGGCCTAGAACAAGAGGGACTTCTCCTGCTTCATACCAGAACGATTTTCGTGACTCGGGAGGGCTAGAGAACCAGAGCGTGCAAGAATTGGAGAACTATGCTGTGTACAAGTCTGAGGAGACAACAAAGAGTGTCAACAATTGCCTCAAGATTGCTGAGGACATCAGGGAGAGTGCTACAACCACGCTTGACACATTGCATCAGCAGGGTGATCAGATTAATAGGACACACATGGCGGCTGTCGATATAGATAGGGATTTGAGCAAGGGTGAAAAGCTTTTAAACGGACTTGGAGGCATTTTCTCAAAGCCTTGGAAGGCAAAGAAGACCAAGGAGATCAACGGCCCTGATATGAGTGCAGCTTCAACCAGTAAAGGTGCAACTAAAGCGCAGAGGGAAAAGTTGGGCATATCTCCTGCACCCAAAGGAGGCCGGTCAGCTCCTCGGACACCTCCTCCTGAAGGCGCAAGTGCCATTCAGCAAGTCGAGGCTGAGAAGGCAAAGCAAGATGATGCTCTTTCAGATCTAAGTAATATTTTGGGCGATTTGAAGGGAATGGCTACGGACATGGGAAGTGAACTCGAGAGGCAAAATAAAGCTATGGATCATCTCTCTGAGGATGTGGATGAACTCAACTCTCGAATGAAAGGTGCGAATCAACGAACTCGACGCCTGCTAGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04721 ko04911 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

30.68

Weight (kDa)

8.46

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13890 AT1G13890
fragaria_vesca	FvH4_4g30390
malus_domestica	MD13G1064800.v1.1 MD16G1063400.v1.1
prunus_persica	Prupe.1G283300_v2.0.a1 Prupe.1G283300_v2.0.a1 Prupe.1G283300_v2.0.a1
pyrus_communis	pycom13g05720
rosa_chinensis	RchiOBHm_Chr4g0438681
rosa_laevigata	RLG00000006338
rosa_multiflora	Rmu_sc0000738.1_g000043 Rmu_sc0002505.1_g000003 Rmu_sc0012315.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379720
rosa_rugosa	Rorug04G0312700 Rorug04G0312700
rosa_samantha	Rh4AG363100 Rh4BG374500 Rh4CG388700 Rh4DG369000
rosa_wichuraiana	Rw0G007160 Rw0G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	2 cut(s)	62, 780
AcuI	CTGAAG	1 cut(s)	648
AcyI	GRCGYC	1 cut(s)	838
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	4 cut(s)	148, 149, 596, 629
AgsI	TTSAA	2 cut(s)	534, 718
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	5 cut(s)	62, 445, 530, 608, 767
AluI	AGCT	5 cut(s)	62, 445, 530, 608, 767
Alw21I	GWGCWC	2 cut(s)	64, 135
Alw26I	GTCTC	2 cut(s)	103, 281
AlwI	GGATC	2 cut(s)	62, 780
Ama87I	CYCGRG	2 cut(s)	223, 749
AoxI	GGCC	3 cut(s)	170, 511, 598
ApeKI	GCWGC	1 cut(s)	527
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	118
AspLEI	GCGC	2 cut(s)	559, 635
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	4 cut(s)	130, 164, 389, 449
AvaI	CYCGRG	2 cut(s)	223, 749
BanII	GRGCYC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	500
Bbv12I	GWGCWC	2 cut(s)	64, 135
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	539
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	526
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	103, 281
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	4 cut(s)	117, 174, 233, 845
BfmI	CTRYAG	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	846
BglII	AGATCT	1 cut(s)	691
BisI	GCNGC	2 cut(s)	405, 528
BlsI	GCNGC	2 cut(s)	406, 529
Bme1390I	CCNGG	1 cut(s)	57
BmeT110I	CYCGRG	2 cut(s)	223, 749
BmgT120I	GGNCC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	2 cut(s)	376, 670
BpiI	GAAGAC	1 cut(s)	500
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	838
BsaJI	CCNNGG	4 cut(s)	55, 479, 498, 611
BsaXI	ACNNNNNCTCC	2 cut(s)	607, 637
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 149, 596, 629
Bse118I	RCCGGY	1 cut(s)	600
Bse1I	ACTGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	4 cut(s)	55, 479, 498, 611
BseGI	GGATG	2 cut(s)	793, 799
BseLI	CCNNNNNNNGG	4 cut(s)	148, 149, 596, 629
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	4 cut(s)	273, 315, 651, 774
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	3 cut(s)	299, 600, 612
BseXI	GCAGC	1 cut(s)	539
BseYI	CCCAGC	1 cut(s)	103
BsgI	GTGCAG	2 cut(s)	546, 570
BshFI	GGCC	3 cut(s)	172, 513, 600
BsiHKAI	GWGCWC	2 cut(s)	64, 135
BsiHKCI	CYCGRG	2 cut(s)	223, 749
BsiSI	CCGG	1 cut(s)	601
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	4 cut(s)	148, 149, 596, 629
BsmAI	GTCTC	2 cut(s)	103, 281
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	172, 513, 600
BsoBI	CYCGRG	2 cut(s)	223, 749
Bsp1286I	GDGCHC	2 cut(s)	64, 135
Bsp1407I	TGTACA	1 cut(s)	273
Bsp143I	GATC	5 cut(s)	67, 379, 504, 691, 772
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	3 cut(s)	172, 513, 600
BspCNI	CTCAG	4 cut(s)	274, 316, 652, 775
BspPI	GGATC	2 cut(s)	62, 780
BsrDI	GCAATG	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	600
BsrGI	TGTACA	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	537
BssAI	RCCGGY	1 cut(s)	600
BssECI	CCNNGG	4 cut(s)	55, 479, 498, 611
BssMI	GATC	5 cut(s)	67, 379, 504, 691, 772
BssNI	GRCGYC	1 cut(s)	838
BssT1I	CCWWGG	2 cut(s)	479, 498
Bst2UI	CCWGG	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	838
BstAUI	TGTACA	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	248, 842
BstDEI	CTNAG	7 cut(s)	27, 93, 282, 324, 660, 695, 783
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	2 cut(s)	793, 799
BstHHI	GCGC	2 cut(s)	559, 635
BstKTI	GATC	5 cut(s)	70, 382, 507, 694, 775
BstMAI	GTCTC	2 cut(s)	103, 281
BstMBI	GATC	5 cut(s)	67, 379, 504, 691, 772
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 554, 665, 846
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	539
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
BsuRI	GGCC	3 cut(s)	172, 513, 600
BtsCI	GGATG	2 cut(s)	793, 799
Cac8I	GCNNGC	2 cut(s)	248, 842
CfoI	GCGC	2 cut(s)	559, 635
Cfr10I	RCCGGY	1 cut(s)	600
Cfr13I	GGNCC	1 cut(s)	512
CseI	GACGC	1 cut(s)	846
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	4 cut(s)	148, 164, 400, 736
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	7 cut(s)	27, 93, 282, 324, 660, 695, 783
DpnI	GATC	5 cut(s)	69, 381, 506, 693, 774
DpnII	GATC	5 cut(s)	67, 379, 504, 691, 772
DraI	TTTAAA	1 cut(s)	450
Ecl136II	GAGCTC	1 cut(s)	62
Eco130I	CCWWGG	2 cut(s)	479, 498
Eco147I	AGGCCT	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	648
Eco88I	CYCGRG	2 cut(s)	223, 749
EcoICRI	GAGCTC	1 cut(s)	62
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	479, 498
EcoT38I	GRGCYC	1 cut(s)	64
ErhI	CCWWGG	2 cut(s)	479, 498
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	4 cut(s)	151, 167, 403, 739
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	4 cut(s)	147, 163, 399, 735
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	405, 528
FokI	GGATG	2 cut(s)	800, 806
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	2 cut(s)	405, 528
FspBI	CTAG	4 cut(s)	117, 174, 233, 845
GlaI	GCGC	2 cut(s)	558, 634
GluI	GCNGC	2 cut(s)	405, 528
GsaI	CCCAGC	1 cut(s)	107
HaeIII	GGCC	3 cut(s)	172, 513, 600
HapII	CCGG	1 cut(s)	601
HgaI	GACGC	1 cut(s)	846
HhaI	GCGC	2 cut(s)	559, 635
Hin1I	GRCGYC	1 cut(s)	838
Hin1II	CATG	4 cut(s)	151, 167, 403, 739
Hin6I	GCGC	2 cut(s)	557, 633
HinP1I	GCGC	2 cut(s)	557, 633
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	2 cut(s)	221, 823
HpaII	CCGG	1 cut(s)	601
HphI	GGTGA	4 cut(s)	130, 164, 389, 449
Hpy166II	GTNNAC	4 cut(s)	52, 274, 304, 746
Hpy188I	TCNGA	7 cut(s)	85, 124, 283, 384, 615, 691, 784
Hpy188III	TCNNGA	7 cut(s)	65, 218, 225, 316, 626, 751, 807
Hpy8I	GTNNAC	4 cut(s)	52, 274, 304, 746
Hpy99I	CGWCG	1 cut(s)	840
HpyAV	CCTTC	4 cut(s)	478, 623, 658, 712
HpyCH4V	TGCA	6 cut(s)	35, 250, 367, 527, 548, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 554, 665, 846
HpyF3I	CTNAG	7 cut(s)	27, 93, 282, 324, 660, 695, 783
Hsp92I	GRCGYC	1 cut(s)	838
Hsp92II	CATG	4 cut(s)	151, 167, 403, 739
HspAI	GCGC	2 cut(s)	557, 633
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	5 cut(s)	67, 379, 504, 691, 772
LmnI	GCTCC	2 cut(s)	59, 613
Lsp1109I	GCAGC	1 cut(s)	539
LweI	GCATC	2 cut(s)	376, 670
MaeI	CTAG	4 cut(s)	117, 174, 233, 845
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	5 cut(s)	69, 381, 506, 693, 774
MboI	GATC	5 cut(s)	67, 379, 504, 691, 772
MboII	GAAGA	1 cut(s)	505
MfeI	CAATTG	1 cut(s)	307
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	2 cut(s)	64, 135
MluCI	AATT	2 cut(s)	254, 307
MlyI	GAGTC	1 cut(s)	215
MroXI	GAANNNNTTC	1 cut(s)	118
MseI	TTAA	2 cut(s)	387, 449
MspI	CCGG	1 cut(s)	601
MspR9I	CCNGG	1 cut(s)	57
MunI	CAATTG	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	4 cut(s)	32, 554, 665, 846
NdeII	GATC	5 cut(s)	67, 379, 504, 691, 772
NlaIII	CATG	4 cut(s)	151, 167, 403, 739
NmuCI	GTSAC	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	749
PceI	AGGCCT	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	823
PkrI	GCNGC	2 cut(s)	406, 529
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	691
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	387, 449
SatI	GCNGC	2 cut(s)	405, 528
Sau3AI	GATC	5 cut(s)	67, 379, 504, 691, 772
Sau96I	GGNCC	1 cut(s)	512
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	64, 135
SetI	ASST	8 cut(s)	64, 447, 532, 547, 610, 622, 769, 820
SfaNI	GCATC	2 cut(s)	376, 670
SfcI	CTRYAG	1 cut(s)	48
Sfr274I	CTCGAG	1 cut(s)	749
SlaI	CTCGAG	1 cut(s)	749
SmlI	CTYRAG	2 cut(s)	314, 749
SmoI	CTYRAG	2 cut(s)	314, 749
SpeI	ACTAGT	1 cut(s)	116
Sse9I	AATT	2 cut(s)	254, 307
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	1 cut(s)	404
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	4 cut(s)	117, 174, 233, 845
SstI	GAGCTC	1 cut(s)	64
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	479, 498
TaqI	TCGA	5 cut(s)	411, 654, 750, 808, 835
TasI	AATT	2 cut(s)	254, 307
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	1 cut(s)	823
Tru1I	TTAA	2 cut(s)	387, 449
Tru9I	TTAA	2 cut(s)	387, 449
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	4 cut(s)	29, 189, 810, 827
TspGWI	ACGGA	2 cut(s)	468, 746
VspI	ATTAAT	1 cut(s)	387
XagI	CCTNNNNNAGG	1 cut(s)	627
XhoI	CTCGAG	1 cut(s)	749
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	4 cut(s)	117, 174, 233, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.