Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008304

Physical Location & Seq

Genomic Coordinates Forward (+)

4508659 .. 4510509

Gene Structure 1851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1063400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTTTGGGTCAAAAAAATCACCTGCAAAGATTGCTCAAGCTGATTCAGATGCCGGGAAGAACGTGCTTAACCCCGCGAGAAGAACTTCTTCGGAGCCTATGCTTGTCACCCCGGATTTCAGCAACGAAAAAAAACCATTAGAGCAGCAGAGTATGCAAGAGTTAGAGAAATATGCCGTTAACAAGGCCGAGGAGACAACAAAGAGTGTCAACAACTGCCTCAGGATTGCTGAGGACATCAGAGGGGATGCTACAAGGACACTTGACATGTTGCACCAGCAGGGTGAGCAAATTACAAGGACTCACATGGCGGCTGTTGATATCGATAAGGATTTGAGTCGGGGTGAGAAGATTTTAAACAATCTTGGAGGCATGTTCTCAATGCCTTGGAAGCCGAAGAAGACCAAGGATATTTCGGGGCCTGATTTTTCATTAGCTGCACCCAAAAAAGCTGACCCACAGCAGAAGGAAAAGTTGGGTATAGCTCCGAAAGGGCGGTCAGCTCCTGCAACGCCTCCTCCCGAAGGATCAGGTGCCTTGCAAAAAGTCGAGCATGAGAAGGCAAAGCAAGAAGATGCTCTTTCAGACCTAAGCAATATATTGGGGGATCTGAAGGGTATGGCTATGGATATGGGAAGTGAAATTGACAGGCAAAACAAAGCTATTGATAATCTCTCTGACGATGTTGATGAGCTTAACTCTCGAGTGAAAGGTGCTAATCAACGTACACGACGATTGCTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04721 ko04911 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

27.15

Weight (kDa)

7.76

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13890 AT1G13890
fragaria_vesca	FvH4_4g30390
malus_domestica	MD13G1064800.v1.1 MD16G1063400.v1.1
prunus_persica	Prupe.1G283300_v2.0.a1 Prupe.1G283300_v2.0.a1 Prupe.1G283300_v2.0.a1
pyrus_communis	pycom13g05720
rosa_chinensis	RchiOBHm_Chr4g0438681
rosa_laevigata	RLG00000006338
rosa_multiflora	Rmu_sc0000738.1_g000043 Rmu_sc0002505.1_g000003 Rmu_sc0012315.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379720
rosa_rugosa	Rorug04G0312700 Rorug04G0312700
rosa_samantha	Rh4AG363100 Rh4BG374500 Rh4CG388700 Rh4DG369000
rosa_wichuraiana	Rw0G007160 Rw0G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	31
Acc36I	ACCTGC	1 cut(s)	31
AccB1I	GGYRCC	1 cut(s)	533
AccII	CGCG	1 cut(s)	77
AciI	CCGC	3 cut(s)	75, 311, 496
AclWI	GGATC	2 cut(s)	535, 615
AcuI	CTGAAG	1 cut(s)	632
AfaI	GTAC	1 cut(s)	727
AfiI	CCNNNNNNNGG	1 cut(s)	524
AflIII	ACRYGT	1 cut(s)	267
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	7 cut(s)	41, 437, 452, 485, 503, 662, 694
AluI	AGCT	7 cut(s)	41, 437, 452, 485, 503, 662, 694
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	535, 615
AlwNI	CAGNNNCTG	1 cut(s)	506
Ama87I	CYCGRG	1 cut(s)	702
AoxI	GGCC	2 cut(s)	186, 419
ApeKI	GCWGC	2 cut(s)	145, 437
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
Asp700I	GAANNNNTTC	2 cut(s)	85, 88
AspS9I	GGNCC	1 cut(s)	419
AsuC2I	CCSGG	2 cut(s)	55, 113
AsuHPI	GGTGA	4 cut(s)	12, 100, 296, 356
AvaI	CYCGRG	1 cut(s)	702
AxyI	CCTNAGG	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	533
BbsI	GAAGAC	1 cut(s)	407
BbvCI	CCTCAGC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	157, 424
BceAI	ACGGC	1 cut(s)	161
BcnI	CCSGG	2 cut(s)	55, 113
BcoDI	GTCTC	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	3 cut(s)	146, 312, 438
BlsI	GCNGC	3 cut(s)	147, 313, 439
Bme1390I	CCNGG	2 cut(s)	55, 113
BmeT110I	CYCGRG	1 cut(s)	702
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	3 cut(s)	96, 420, 535
BmrFI	CCNGG	2 cut(s)	55, 113
BmsI	GCATC	3 cut(s)	40, 238, 565
BpiI	GAAGAC	1 cut(s)	407
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
Bpu10I	CCTNAGC	2 cut(s)	231, 590
BpuEI	CTTGAG	1 cut(s)	21
BpuMI	CCSGG	2 cut(s)	55, 113
Bsa29I	ATCGAT	1 cut(s)	324
BsaJI	CCNNGG	4 cut(s)	111, 189, 386, 405
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	1 cut(s)	524
Bse21I	CCTNAGG	1 cut(s)	221
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	4 cut(s)	111, 189, 386, 405
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	524
BseMII	CTCAG	2 cut(s)	222, 235
BseRI	GAGGAG	2 cut(s)	206, 507
BseXI	GCAGC	2 cut(s)	157, 424
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	2 cut(s)	188, 421
BshNI	GGYRCC	1 cut(s)	533
BshVI	ATCGAT	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	702
BsiSI	CCGG	2 cut(s)	54, 113
BslI	CCNNNNNNNGG	1 cut(s)	524
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	2 cut(s)	188, 421
BsoBI	CYCGRG	1 cut(s)	702
Bsp143I	GATC	2 cut(s)	527, 607
BspACI	CCGC	3 cut(s)	75, 311, 496
BspANI	GGCC	2 cut(s)	188, 421
BspCNI	CTCAG	2 cut(s)	223, 234
BspDI	ATCGAT	1 cut(s)	324
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	3 cut(s)	96, 420, 535
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	2 cut(s)	535, 615
BspT107I	GGYRCC	1 cut(s)	533
BssECI	CCNNGG	4 cut(s)	111, 189, 386, 405
BssMI	GATC	2 cut(s)	527, 607
BssT1I	CCWWGG	2 cut(s)	386, 405
BstAPI	GCANNNNNTGC	2 cut(s)	32, 154
BstDEI	CTNAG	3 cut(s)	221, 231, 590
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	2 cut(s)	530, 610
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	527, 607
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 154, 286, 391
BstNSI	RCATGY	2 cut(s)	271, 376
BstSCI	CCNGG	2 cut(s)	53, 111
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	157, 424
BstV2I	GAAGAC	1 cut(s)	407
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
Bsu15I	ATCGAT	1 cut(s)	324
Bsu36I	CCTNAGG	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	188, 421
BsuTUI	ATCGAT	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	253
BveI	ACCTGC	1 cut(s)	31
CaiI	CAGNNNCTG	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	419
ClaI	ATCGAT	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	726
CviAII	CATG	4 cut(s)	268, 307, 373, 554
CviQI	GTAC	1 cut(s)	726
DdeI	CTNAG	3 cut(s)	221, 231, 590
DpnI	GATC	2 cut(s)	529, 609
DpnII	GATC	2 cut(s)	527, 607
DraI	TTTAAA	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	386, 405
Eco32I	GATATC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	632
Eco81I	CCTNAGG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	702
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	2 cut(s)	386, 405
ErhI	CCWWGG	2 cut(s)	386, 405
FaeI	CATG	4 cut(s)	271, 310, 376, 557
FalI	AAGNNNNNCTT	4 cut(s)	73, 105, 564, 596
FatI	CATG	4 cut(s)	267, 306, 372, 553
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	146, 312, 438
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	3 cut(s)	146, 312, 438
GluI	GCNGC	3 cut(s)	146, 312, 438
HaeIII	GGCC	2 cut(s)	188, 421
HapII	CCGG	2 cut(s)	54, 113
Hin1II	CATG	4 cut(s)	271, 310, 376, 557
HincII	GTYRAC	2 cut(s)	181, 211
HindII	GTYRAC	2 cut(s)	181, 211
HinfI	GANTC	3 cut(s)	44, 301, 337
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	2 cut(s)	54, 113
HphI	GGTGA	4 cut(s)	12, 100, 296, 356
Hpy166II	GTNNAC	3 cut(s)	181, 211, 728
Hpy188I	TCNGA	7 cut(s)	49, 94, 242, 489, 586, 612, 679
Hpy188III	TCNNGA	3 cut(s)	223, 521, 702
Hpy8I	GTNNAC	3 cut(s)	181, 211, 728
Hpy99I	CGWCG	1 cut(s)	735
HpyAV	CCTTC	4 cut(s)	460, 518, 553, 607
HpyCH4IV	ACGT	2 cut(s)	63, 724
HpyCH4V	TGCA	6 cut(s)	26, 157, 274, 440, 509, 541
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 154, 286, 391
HpyF3I	CTNAG	3 cut(s)	221, 231, 590
HpySE526I	ACGT	2 cut(s)	63, 724
Hsp92II	CATG	4 cut(s)	271, 310, 376, 557
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	527, 607
LmnI	GCTCC	3 cut(s)	94, 490, 508
Lsp1109I	GCAGC	2 cut(s)	157, 424
LweI	GCATC	3 cut(s)	40, 238, 565
MaeII	ACGT	2 cut(s)	63, 724
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	529, 609
MboI	GATC	2 cut(s)	527, 607
MboII	GAAGA	7 cut(s)	70, 81, 93, 361, 409, 412, 584
MflI	RGATCY	1 cut(s)	607
MluCI	AATT	2 cut(s)	291, 642
MlyI	GAGTC	2 cut(s)	295, 346
MnlI	CCTC	7 cut(s)	184, 226, 230, 236, 362, 525, 528
MroXI	GAANNNNTTC	2 cut(s)	85, 88
MseI	TTAA	4 cut(s)	69, 180, 356, 696
MspI	CCGG	2 cut(s)	54, 113
MspR9I	CCNGG	2 cut(s)	55, 113
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	32, 154, 286, 391
NciI	CCSGG	2 cut(s)	55, 113
NdeII	GATC	2 cut(s)	527, 607
NlaIII	CATG	4 cut(s)	271, 310, 376, 557
NlaIV	GGNNCC	3 cut(s)	96, 420, 535
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	106
NspI	RCATGY	2 cut(s)	271, 376
PaeR7I	CTCGAG	1 cut(s)	702
PaqCI	CACCTGC	1 cut(s)	31
PciI	ACATGT	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	730
PdmI	GAANNNNTTC	2 cut(s)	85, 88
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	147, 313, 439
PleI	GAGTC	2 cut(s)	295, 345
PpsI	GAGTC	2 cut(s)	295, 345
PscI	ACATGT	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	96, 420, 535
PspPI	GGNCC	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	1 cut(s)	727
RsaNI	GTAC	1 cut(s)	726
SaqAI	TTAA	4 cut(s)	69, 180, 356, 696
SatI	GCNGC	3 cut(s)	146, 312, 438
Sau3AI	GATC	2 cut(s)	527, 607
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	2 cut(s)	295, 346
ScrFI	CCNGG	2 cut(s)	55, 113
SfaNI	GCATC	3 cut(s)	40, 238, 565
Sfr274I	CTCGAG	1 cut(s)	702
SlaI	CTCGAG	1 cut(s)	702
SmlI	CTYRAG	2 cut(s)	36, 702
SmoI	CTYRAG	2 cut(s)	36, 702
Sse9I	AATT	2 cut(s)	291, 642
SsiI	CCGC	3 cut(s)	75, 311, 496
StyD4I	CCNGG	2 cut(s)	53, 111
StyI	CCWWGG	2 cut(s)	386, 405
TaiI	ACGT	2 cut(s)	66, 727
TaqI	TCGA	3 cut(s)	324, 549, 703
TasI	AATT	2 cut(s)	291, 642
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	4 cut(s)	69, 180, 356, 696
Tru9I	TTAA	4 cut(s)	69, 180, 356, 696
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	2 cut(s)	145, 437
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	420
XagI	CCTNNNNNAGG	1 cut(s)	522
XceI	RCATGY	2 cut(s)	271, 376
XhoI	CTCGAG	1 cut(s)	702
XmnI	GAANNNNTTC	2 cut(s)	85, 88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.