Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012315.1

Orthogroup ID

OG0008304

Physical Location & Seq

Genomic Coordinates Reverse (-)

2044 .. 3281

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012315.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgttcgggtttttgaaatcgcctgcaaagattgctaagcaaagctctgtagacccaggatctcttgattcagaaacccaatctaatgaggctaagattaccccagcgagacgaactacttctgaacccgtgctcatcaccccagattttggtaatgagaaaccaggtaagcctagtacaagagggacttctcctgcttcatacaagaacgattttcatgactcgggagggctagagaaccagagtgtgcaagagttggagaaatatgcagtgtacaagtctgaggagacaacacagagtgtcaacaattgcctgaggattgctgaggacatcaaggggactgctacaaccacgcttgacacgttgcatcagcagggtgatcagattacgaggacacacatggcggctgtcgatatggataaggatttgagcaagggtgagaagcttttaaacggacttgggggcattttctcaaagccttggaagccaaagaagaccaaggagcttaaaggccctgaattgacagcagattcagctacaaccaataaacgtgcaagtaaagagcagagggaaaagttgggtttatctcctgcgcccaagggaagccggtcagctcctcagacaccccttcctgaaggatcaagtgccattcagcaaatcgaggctgagaaggcaaagcaagatgatgctctctccgatctaagtaatattttgggggatttgaagggaatggctgtggacatgggaagtgaactcgagaggcaaaacaaagctatggatcacctctctgaggatgtggacgagctcaactctcgaatgaaaggtgccaatcaacgaactcgacgcctgctaggccagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04721 ko04911 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

31.08

Weight (kDa)

6.48

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13890 AT1G13890
fragaria_vesca	FvH4_4g30390
malus_domestica	MD13G1064800.v1.1 MD16G1063400.v1.1
prunus_persica	Prupe.1G283300_v2.0.a1 Prupe.1G283300_v2.0.a1 Prupe.1G283300_v2.0.a1
pyrus_communis	pycom13g05720
rosa_chinensis	RchiOBHm_Chr4g0438681
rosa_laevigata	RLG00000006338
rosa_multiflora	Rmu_sc0000738.1_g000043 Rmu_sc0002505.1_g000003 Rmu_sc0012315.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379720
rosa_rugosa	Rorug04G0312700 Rorug04G0312700
rosa_samantha	Rh4AG363100 Rh4BG374500 Rh4CG388700 Rh4DG369000
rosa_wichuraiana	Rw0G007160 Rw0G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	824
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	3 cut(s)	67, 646, 786
AcuI	CTGAAG	1 cut(s)	654
AcyI	GRCGYC	1 cut(s)	844
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	178, 275
AfiI	CCNNNNNNNGG	2 cut(s)	149, 790
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	16, 724
AjnI	CCWGG	2 cut(s)	55, 163
AluBI	AGCT	7 cut(s)	45, 445, 505, 536, 614, 773, 805
AluI	AGCT	7 cut(s)	45, 445, 505, 536, 614, 773, 805
Alw21I	GWGCWC	2 cut(s)	135, 807
Alw26I	GTCTC	2 cut(s)	103, 281
AlwI	GGATC	3 cut(s)	67, 646, 786
Ama87I	CYCGRG	2 cut(s)	223, 755
AoxI	GGCC	2 cut(s)	511, 853
Asp700I	GAANNNNTTC	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	4 cut(s)	130, 389, 449, 773
AvaI	CYCGRG	2 cut(s)	223, 755
AxyI	CCTNAGG	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	824
BanII	GRGCYC	1 cut(s)	807
BbsI	GAAGAC	1 cut(s)	500
Bbv12I	GWGCWC	2 cut(s)	135, 807
BbvCI	CCTCAGC	1 cut(s)	324
BciT130I	CCWGG	2 cut(s)	57, 165
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	103, 281
BfaI	CTAG	3 cut(s)	174, 233, 851
BfmI	CTRYAG	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	852
BisI	GCNGC	1 cut(s)	405
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	2 cut(s)	57, 165
BmeT110I	CYCGRG	2 cut(s)	223, 755
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	1 cut(s)	826
BmrFI	CCNGG	2 cut(s)	57, 165
BmsI	GCATC	2 cut(s)	376, 676
BpiI	GAAGAC	1 cut(s)	500
BplI	GAGNNNNNCTC	2 cut(s)	794, 826
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	844
BsaJI	CCNNGG	4 cut(s)	55, 479, 498, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 790
Bse118I	RCCGGY	1 cut(s)	606
Bse1I	ACTGG	1 cut(s)	856
Bse21I	CCTNAGG	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	57, 165
BseDI	CCNNGG	4 cut(s)	55, 479, 498, 597
BseGI	GGATG	1 cut(s)	799
BseLI	CCNNNNNNNGG	2 cut(s)	149, 790
BseMII	CTCAG	6 cut(s)	273, 305, 315, 632, 657, 780
BseNI	ACTGG	1 cut(s)	856
BseRI	GAGGAG	2 cut(s)	299, 606
BseYI	CCCAGC	1 cut(s)	103
BshFI	GGCC	2 cut(s)	513, 855
BshNI	GGYRCC	1 cut(s)	824
BsiHKAI	GWGCWC	2 cut(s)	135, 807
BsiHKCI	CYCGRG	2 cut(s)	223, 755
BsiSI	CCGG	1 cut(s)	607
BslFI	GGGAC	2 cut(s)	199, 352
BslI	CCNNNNNNNGG	2 cut(s)	149, 790
BsmAI	GTCTC	2 cut(s)	103, 281
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	2 cut(s)	199, 352
BsnI	GGCC	2 cut(s)	513, 855
BsoBI	CYCGRG	2 cut(s)	223, 755
Bsp1286I	GDGCHC	2 cut(s)	135, 807
Bsp1407I	TGTACA	1 cut(s)	273
Bsp143I	GATC	5 cut(s)	59, 379, 638, 697, 778
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	2 cut(s)	513, 855
BspCNI	CTCAG	6 cut(s)	274, 306, 316, 631, 658, 781
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	826
BspPI	GGATC	3 cut(s)	67, 646, 786
BspT107I	GGYRCC	1 cut(s)	824
BsrFI	RCCGGY	1 cut(s)	606
BsrGI	TGTACA	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	856
BssAI	RCCGGY	1 cut(s)	606
BssECI	CCNNGG	4 cut(s)	55, 479, 498, 597
BssMI	GATC	5 cut(s)	59, 379, 638, 697, 778
BssNI	GRCGYC	1 cut(s)	844
BssT1I	CCWWGG	3 cut(s)	479, 498, 597
Bst2UI	CCWGG	2 cut(s)	57, 165
BstACI	GRCGYC	1 cut(s)	844
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstAUI	TGTACA	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	24, 848
BstDEI	CTNAG	9 cut(s)	36, 93, 282, 314, 324, 618, 666, 701, 789
BstENI	CCTNNNNNAGG	1 cut(s)	788
BstF5I	GGATG	1 cut(s)	799
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	5 cut(s)	62, 382, 641, 700, 781
BstMAI	GTCTC	2 cut(s)	103, 281
BstMBI	GATC	5 cut(s)	59, 379, 638, 697, 778
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 484, 533, 671, 852
BstNI	CCWGG	2 cut(s)	57, 165
BstSCI	CCNGG	2 cut(s)	55, 163
BstSFI	CTRYAG	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
Bsu36I	CCTNAGG	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	513, 855
BtsCI	GGATG	1 cut(s)	799
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	2 cut(s)	24, 848
CciI	TCATGA	1 cut(s)	217
CfoI	GCGC	1 cut(s)	595
Cfr10I	RCCGGY	1 cut(s)	606
Cfr13I	GGNCC	1 cut(s)	512
CseI	GACGC	1 cut(s)	852
CsiI	ACCWGGT	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	177, 274
CviAII	CATG	3 cut(s)	218, 400, 742
CviQI	GTAC	2 cut(s)	177, 274
DdeI	CTNAG	9 cut(s)	36, 93, 282, 314, 324, 618, 666, 701, 789
DpnI	GATC	5 cut(s)	61, 381, 640, 699, 780
DpnII	GATC	5 cut(s)	59, 379, 638, 697, 778
DraI	TTTAAA	1 cut(s)	450
DraIII	CACNNNGTG	1 cut(s)	299
Ecl136II	GAGCTC	1 cut(s)	805
Eco130I	CCWWGG	3 cut(s)	479, 498, 597
Eco24I	GRGCYC	1 cut(s)	807
Eco53kI	GAGCTC	1 cut(s)	805
Eco57I	CTGAAG	1 cut(s)	654
Eco81I	CCTNAGG	1 cut(s)	314
Eco88I	CYCGRG	2 cut(s)	223, 755
EcoICRI	GAGCTC	1 cut(s)	805
EcoNI	CCTNNNNNAGG	1 cut(s)	788
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRII	CCWGG	2 cut(s)	55, 163
EcoT14I	CCWWGG	3 cut(s)	479, 498, 597
EcoT38I	GRGCYC	1 cut(s)	807
ErhI	CCWWGG	3 cut(s)	479, 498, 597
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	3 cut(s)	221, 403, 745
FaiI	YATR	7 cut(s)	202, 219, 267, 401, 416, 743, 776
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	2 cut(s)	199, 352
FatI	CATG	3 cut(s)	217, 399, 741
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	1 cut(s)	806
FriOI	GRGCYC	1 cut(s)	807
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	3 cut(s)	174, 233, 851
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	1 cut(s)	405
GsaI	CCCAGC	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	513, 855
HapII	CCGG	1 cut(s)	607
HgaI	GACGC	1 cut(s)	852
HhaI	GCGC	1 cut(s)	595
Hin1I	GRCGYC	1 cut(s)	844
Hin1II	CATG	3 cut(s)	221, 403, 745
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	3 cut(s)	68, 221, 530
HpaII	CCGG	1 cut(s)	607
HphI	GGTGA	4 cut(s)	130, 389, 449, 773
Hpy166II	GTNNAC	6 cut(s)	52, 274, 304, 739, 752, 799
Hpy188I	TCNGA	7 cut(s)	73, 124, 283, 384, 621, 697, 790
Hpy188III	TCNNGA	6 cut(s)	65, 218, 225, 632, 757, 813
Hpy8I	GTNNAC	6 cut(s)	52, 274, 304, 739, 752, 799
Hpy99I	CGWCG	1 cut(s)	846
HpyAV	CCTTC	4 cut(s)	629, 638, 664, 718
HpyCH4IV	ACGT	2 cut(s)	362, 550
HpyCH4V	TGCA	5 cut(s)	26, 250, 269, 367, 554
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 484, 533, 671, 852
HpyF3I	CTNAG	9 cut(s)	36, 93, 282, 314, 324, 618, 666, 701, 789
HpySE526I	ACGT	2 cut(s)	362, 550
Hsp92I	GRCGYC	1 cut(s)	844
Hsp92II	CATG	3 cut(s)	221, 403, 745
HspAI	GCGC	1 cut(s)	593
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	5 cut(s)	59, 379, 638, 697, 778
LmnI	GCTCC	2 cut(s)	502, 619
LweI	GCATC	2 cut(s)	376, 676
MabI	ACCWGGT	1 cut(s)	163
MaeI	CTAG	3 cut(s)	174, 233, 851
MaeII	ACGT	2 cut(s)	362, 550
MalI	GATC	5 cut(s)	61, 381, 640, 699, 780
MboI	GATC	5 cut(s)	59, 379, 638, 697, 778
MboII	GAAGA	1 cut(s)	505
MfeI	CAATTG	1 cut(s)	307
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	2 cut(s)	135, 807
MluCI	AATT	2 cut(s)	307, 518
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	237
MroXI	GAANNNNTTC	1 cut(s)	118
MseI	TTAA	2 cut(s)	449, 507
MspI	CCGG	1 cut(s)	607
MspR9I	CCNGG	2 cut(s)	57, 165
MunI	CAATTG	1 cut(s)	307
MvaI	CCWGG	2 cut(s)	57, 165
MwoI	GCNNNNNNNGC	5 cut(s)	32, 484, 533, 671, 852
NdeII	GATC	5 cut(s)	59, 379, 638, 697, 778
NlaIII	CATG	3 cut(s)	221, 403, 745
NlaIV	GGNNCC	1 cut(s)	826
PaeR7I	CTCGAG	1 cut(s)	755
PagI	TCATGA	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	68, 530
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	807
Psp6I	CCWGG	2 cut(s)	55, 163
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	2 cut(s)	55, 163
PspN4I	GGNNCC	1 cut(s)	826
PspPI	GGNCC	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	2 cut(s)	178, 275
RsaNI	GTAC	2 cut(s)	177, 274
SacI	GAGCTC	1 cut(s)	807
SaqAI	TTAA	2 cut(s)	449, 507
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	5 cut(s)	59, 379, 638, 697, 778
Sau96I	GGNCC	1 cut(s)	512
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	57, 165
SduI	GDGCHC	2 cut(s)	135, 807
SexAI	ACCWGGT	1 cut(s)	163
SfaNI	GCATC	2 cut(s)	376, 676
SfcI	CTRYAG	1 cut(s)	48
Sfr274I	CTCGAG	1 cut(s)	755
SlaI	CTCGAG	1 cut(s)	755
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
Sse9I	AATT	2 cut(s)	307, 518
SsiI	CCGC	1 cut(s)	404
SspI	AATATT	1 cut(s)	709
SspMI	CTAG	3 cut(s)	174, 233, 851
SstI	GAGCTC	1 cut(s)	807
StyD4I	CCNGG	2 cut(s)	55, 163
StyI	CCWWGG	3 cut(s)	479, 498, 597
TaiI	ACGT	2 cut(s)	365, 553
TaqI	TCGA	5 cut(s)	411, 660, 756, 814, 841
TasI	AATT	2 cut(s)	307, 518
TatI	WGTACW	2 cut(s)	176, 273
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	2 cut(s)	68, 530
Tru1I	TTAA	2 cut(s)	449, 507
Tru9I	TTAA	2 cut(s)	449, 507
TscAI	CASTG	1 cut(s)	276
TspDTI	ATGAA	3 cut(s)	189, 206, 833
TspGWI	ACGGA	1 cut(s)	468
TspRI	CASTG	1 cut(s)	276
Van91I	CCANNNNNTGG	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	788
XhoI	CTCGAG	1 cut(s)	755
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	3 cut(s)	174, 233, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.