AT1G17285

alanine aminotransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
5920542 .. 5921483
942 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17285.1

Sequence Viewer

Length: 288 bp
ATGAAGAGATGCTGTTCAGTGGCTCTGGTTCTGTTACTTGTAGCTTTCTTTAGCAGCAAGTATAGTGTAGAAGGACGTTCTCTGTTAACGATGACACATTCGAGTCAAGCTGTGAGAGATTTGCCTGTAAGCAAGGAGATGAAGAAAGAGCCACTTAAGGGAGAAAATGATAGCTTCAGAAGAATCCCAAGGAGTGGCTCAAACCCTATACAGAACAAGTGTAATCCACCGGTAGATGTTAAAGCAAGTAGGAAACAACAGCAGATCACAACATCAAGAAAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.66

Weight (kDa)

10.25

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017538)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 158, 194
AflII CTTAAG 1 cut(s) 155
AgeI ACCGGT 1 cut(s) 229
AluBI AGCT 3 cut(s) 44, 110, 174
AluI AGCT 3 cut(s) 44, 110, 174
ApeKI GCWGC 1 cut(s) 54
AsiGI ACCGGT 1 cut(s) 229
BbvI GCAGC 1 cut(s) 66
BfrI CTTAAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 194
Bse118I RCCGGY 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 188
BseLI CCNNNNNNNGG 2 cut(s) 158, 194
BseXI GCAGC 1 cut(s) 66
BshTI ACCGGT 1 cut(s) 229
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 158, 194
Bsp143I GATC 1 cut(s) 264
BspTI CTTAAG 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 188
BstAFI CTTAAG 1 cut(s) 155
BstKTI GATC 1 cut(s) 267
BstMBI GATC 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 229
CspAI ACCGGT 1 cut(s) 229
CviJI RGCY 6 cut(s) 23, 44, 110, 151, 174, 198
CviKI_1 RGCY 6 cut(s) 23, 44, 110, 151, 174, 198
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
FaiI YATR 2 cut(s) 63, 209
FalI AAGNNNNNCTT 3 cut(s) 138, 170, 268
Fnu4HI GCNGC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 55
HapII CCGG 1 cut(s) 230
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 2 cut(s) 103, 183
HpaI GTTAAC 1 cut(s) 87
HpaII CCGG 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 1 cut(s) 179
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 76
HpySE526I ACGT 1 cut(s) 76
KspAI GTTAAC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 264
LpnPI CCDG 3 cut(s) 11, 138, 243
Lsp1109I GCAGC 1 cut(s) 66
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 33
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 3 cut(s) 16, 154, 192
MlyI GAGTC 1 cut(s) 112
MseI TTAA 4 cut(s) 86, 156, 240, 286
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 1 cut(s) 230
NdeII GATC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 183
PflMI CCANNNNNTGG 1 cut(s) 194
PinAI ACCGGT 1 cut(s) 229
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
SaqAI TTAA 4 cut(s) 86, 156, 240, 286
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 1 cut(s) 264
SchI GAGTC 1 cut(s) 112
SetI ASST 5 cut(s) 46, 79, 112, 176, 286
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 188
TaiI ACGT 1 cut(s) 79
TaqI TCGA 1 cut(s) 101
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 4 cut(s) 86, 156, 240, 286
Tru9I TTAA 4 cut(s) 86, 156, 240, 286
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 54
TspDTI ATGAA 2 cut(s) 17, 155
TspRI CASTG 1 cut(s) 24
Van91I CCANNNNNTGG 1 cut(s) 194
Vha464I CTTAAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.