Prupe.3G030800_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
2286250 .. 2287101
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G030800.2

Sequence Viewer

Length: 276 bp
ATGAATATGAAGACTTGGTCTAGAGTTCTAGCTGCTCTGGCTCTTGCTCTTTCCATGGTGCTCTCAACATGGCCTGATATTGCAACAGCACAAGCTCGTCCATTAACTTCTGCTTCTGCCTCTGCATCGAAAAAAGCAGCTTCTGCATCTTCATCACAAGGTCTTGAAGATTTGGAGGCGAAGAAGAAGAACCCGTATATGCAAGTTGGCTCAAGCTTTAGAAGAATACCACCAAGCACTTCAAATCCCACACAGAACAAGTCCAATCCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.63

Weight (kDa)

10.45

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017538)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 167, 243
AluBI AGCT 4 cut(s) 32, 95, 140, 216
AluI AGCT 4 cut(s) 32, 95, 140, 216
Alw21I GWGCWC 1 cut(s) 63
AlwNI CAGNNNCTG 1 cut(s) 143
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 32, 137
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 19, 149
BfaI CTAG 2 cut(s) 21, 29
BisI GCNGC 2 cut(s) 33, 138
BlsI GCNGC 2 cut(s) 34, 139
BmsI GCATC 2 cut(s) 134, 155
BpiI GAAGAC 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 19, 149
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 63
BsnI GGCC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 63
Bsp19I CCATGG 1 cut(s) 54
BspANI GGCC 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 54
BstMWI GCNNNNNNNGC 2 cut(s) 38, 143
BstV1I GCAGC 2 cut(s) 19, 149
BstV2I GAAGAC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 143
CviAII CATG 2 cut(s) 55, 69
CviJI RGCY 7 cut(s) 32, 41, 73, 95, 140, 210, 216
CviKI_1 RGCY 7 cut(s) 32, 41, 73, 95, 140, 210, 216
Eco130I CCWWGG 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 2 cut(s) 58, 72
FaiI YATR 6 cut(s) 8, 56, 70, 198, 200, 274
FatI CATG 2 cut(s) 54, 68
Fnu4HI GCNGC 2 cut(s) 33, 138
Fsp4HI GCNGC 2 cut(s) 33, 138
FspBI CTAG 2 cut(s) 21, 29
GluI GCNGC 2 cut(s) 33, 138
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 2 cut(s) 58, 72
HindIII AAGCTT 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 21, 164
HpyCH4V TGCA 4 cut(s) 83, 125, 146, 202
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 143
Hsp92II CATG 2 cut(s) 58, 72
LpnPI CCDG 2 cut(s) 23, 87
Lsp1109I GCAGC 2 cut(s) 19, 149
LweI GCATC 2 cut(s) 134, 155
MaeI CTAG 2 cut(s) 21, 29
MboII GAAGA 7 cut(s) 22, 141, 179, 193, 196, 199, 234
MhlI GDGCHC 1 cut(s) 63
MnlI CCTC 2 cut(s) 130, 169
MseI TTAA 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 38, 143
NcoI CCATGG 1 cut(s) 54
NlaIII CATG 2 cut(s) 58, 72
PflFI GACNNNGTC 1 cut(s) 16
PkrI GCNGC 2 cut(s) 34, 139
PstNI CAGNNNCTG 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 16
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 2 cut(s) 33, 138
SduI GDGCHC 1 cut(s) 63
SetI ASST 5 cut(s) 34, 97, 142, 163, 218
SfaNI GCATC 2 cut(s) 134, 155
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SspMI CTAG 2 cut(s) 21, 29
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 1 cut(s) 128
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TseI GCWGC 2 cut(s) 32, 137
TspDTI ATGAA 3 cut(s) 17, 23, 141
Tth111I GACNNNGTC 1 cut(s) 16
XbaI TCTAGA 1 cut(s) 20
XspI CTAG 2 cut(s) 21, 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.