MD09G1172400.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
14566192 .. 14566665
474 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1172400.v1.1.491

Sequence Viewer

Length: 273 bp
ATGAAGAGGTGGTCTAGAATTCAGGCTGCTTTGGCTCTTGCAATTTCCATGATATTTTCAACATGGCCTAATATTGCAACAGCAGAAGCACGTCCGTTGGCTTCTGCTTCTGCTTCTGCAGCAGCATCTAAAGCAGCATTTTCAACTTTATCACAGGTTCTTAAAGATTTTGAGGCAGACAAGAAGAACCCAAATAAGCAAATAGGCTCAAGCTTTAGAAGGATTCCTCCAAGCACTTCAAATCCCACCCAGAACAGGTATAATCCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.75

Weight (kDa)

11.04

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017538)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 3 cut(s) 60, 144, 240
AjiI CACGTC 1 cut(s) 92
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 4 cut(s) 26, 119, 122, 134
ApoI RAATTY 1 cut(s) 18
BbvI GCAGC 4 cut(s) 13, 131, 134, 146
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 4 cut(s) 27, 120, 123, 135
BlsI GCNGC 4 cut(s) 28, 121, 124, 136
BmgBI CACGTC 1 cut(s) 92
BmsI GCATC 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 255
BseXI GCAGC 4 cut(s) 13, 131, 134, 146
BshFI GGCC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 255
BsnI GGCC 1 cut(s) 67
BspANI GGCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 121
BstMWI GCNNNNNNNGC 3 cut(s) 32, 119, 131
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 4 cut(s) 13, 131, 134, 146
BsuRI GGCC 1 cut(s) 67
BtrI CACGTC 1 cut(s) 92
CviAII CATG 3 cut(s) 49, 63, 270
CviJI RGCY 6 cut(s) 26, 35, 67, 101, 207, 213
CviKI_1 RGCY 6 cut(s) 26, 35, 67, 101, 207, 213
EcoRI GAATTC 1 cut(s) 18
FaeI CATG 3 cut(s) 52, 66, 273
FaiI YATR 4 cut(s) 50, 64, 261, 271
FatI CATG 3 cut(s) 48, 62, 269
Fnu4HI GCNGC 4 cut(s) 27, 120, 123, 135
Fsp4HI GCNGC 4 cut(s) 27, 120, 123, 135
FspBI CTAG 1 cut(s) 15
GluI GCNGC 4 cut(s) 27, 120, 123, 135
HaeIII GGCC 1 cut(s) 67
Hin1II CATG 3 cut(s) 52, 66, 273
HindIII AAGCTT 1 cut(s) 211
HinfI GANTC 1 cut(s) 223
Hpy188III TCNNGA 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 213
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 41, 77, 119
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 119, 131
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 3 cut(s) 52, 66, 273
LpnPI CCDG 4 cut(s) 8, 140, 241, 263
Lsp1109I GCAGC 4 cut(s) 13, 131, 134, 146
LweI GCATC 1 cut(s) 134
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 91
MboII GAAGA 2 cut(s) 16, 196
MluCI AATT 2 cut(s) 18, 42
MnlI CCTC 2 cut(s) 166, 237
MseI TTAA 1 cut(s) 162
MwoI GCNNNNNNNGC 3 cut(s) 32, 119, 131
NlaIII CATG 3 cut(s) 52, 66, 273
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 4 cut(s) 28, 121, 124, 136
PstI CTGCAG 1 cut(s) 121
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 4 cut(s) 27, 120, 123, 135
SetI ASST 5 cut(s) 11, 94, 159, 215, 260
SfaNI GCATC 1 cut(s) 134
SfcI CTRYAG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 2 cut(s) 18, 42
SspI AATATT 1 cut(s) 73
SspMI CTAG 1 cut(s) 15
TaiI ACGT 1 cut(s) 94
TasI AATT 2 cut(s) 18, 42
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseI GCWGC 4 cut(s) 26, 119, 122, 134
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 84
XapI RAATTY 1 cut(s) 18
XbaI TCTAGA 1 cut(s) 14
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.