Rh2AG459900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017538
Physical Location & Seq
Reverse (-)
67597828 .. 67598580
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG459900.1

Sequence Viewer

Length: 312 bp
ATGCATAGCTCAAAAATGCTTCAGATTGAGACAGTTGAAGAATTCATAGAGCCACAGAAGAGATCAGATATGAAGGCCTGGTCTAGAATTCTTGCTGCTCTAGTACTTGCATTTTCTATGGTATTATCAACCTGGCCGAATGGAGCAACAGCTCAGGCTCGTCCGCTAAAATCTGCCCCAACAAACCGAGCTTCATCATCTTCAGAATCCCTCAAAGATTTGCAGGCAAACAGTAAGAGCCCTTTTAAGCTGGCTGGCTCAAGCTTCCGAAAGATCCCGCCTAGTACTTCGAATCCCACGCAGAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.28

Weight (kDa)

10.28

Isoelectric Point (pI)

69.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017538)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17285 AT1G17285 AT1G17300 AT1G17300 AT5G50443
fragaria_vesca FvH4_6g35870
malus_domestica MD09G1172400.v1.1
prunus_persica Prupe.3G030800_v2.0.a1 Prupe.3G030800_v2.0.a1
rosa_rugosa Rorug02G0403000
rosa_samantha Rh2AG459900 Rh2CG447200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 164, 278
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 134
AcsI RAATTY 2 cut(s) 41, 87
AcuI CTGAAG 2 cut(s) 5, 186
AfaI GTAC 2 cut(s) 105, 286
AgsI TTSAA 1 cut(s) 38
AjnI CCWGG 2 cut(s) 77, 131
AluBI AGCT 5 cut(s) 9, 152, 191, 250, 264
AluI AGCT 5 cut(s) 9, 152, 191, 250, 264
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 1 cut(s) 268
AoxI GGCC 2 cut(s) 75, 134
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 2 cut(s) 41, 87
AsuII TTCGAA 1 cut(s) 290
BanII GRGCYC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 82
BciT130I CCWGG 2 cut(s) 79, 133
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 3 cut(s) 84, 101, 282
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmcAI AGTACT 2 cut(s) 105, 286
Bme1390I CCNGG 2 cut(s) 79, 133
BmrFI CCNGG 2 cut(s) 79, 133
Bpu10I CCTNAGC 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 244
BseBI CCWGG 2 cut(s) 79, 133
BseMII CTCAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 2 cut(s) 77, 136
BsmAI GTCTC 1 cut(s) 23
BsnI GGCC 2 cut(s) 77, 136
Bsp119I TTCGAA 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 2 cut(s) 62, 273
BspACI CCGC 2 cut(s) 164, 278
BspANI GGCC 2 cut(s) 77, 136
BspCNI CTCAG 1 cut(s) 166
BspPI GGATC 1 cut(s) 268
BspT104I TTCGAA 1 cut(s) 290
BssMI GATC 2 cut(s) 62, 273
Bst2UI CCWGG 2 cut(s) 79, 133
Bst4CI ACNGT 2 cut(s) 34, 233
Bst6I CTCTTC 1 cut(s) 53
BstBI TTCGAA 1 cut(s) 290
BstC8I GCNNGC 3 cut(s) 225, 252, 256
BstDEI CTNAG 1 cut(s) 153
BstKTI GATC 2 cut(s) 65, 276
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 2 cut(s) 62, 273
BstNI CCWGG 2 cut(s) 79, 133
BstSCI CCNGG 2 cut(s) 77, 131
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 2 cut(s) 77, 136
Cac8I GCNNGC 3 cut(s) 225, 252, 256
Csp6I GTAC 2 cut(s) 104, 285
CviQI GTAC 2 cut(s) 104, 285
DdeI CTNAG 1 cut(s) 153
DpnI GATC 2 cut(s) 64, 275
DpnII GATC 2 cut(s) 62, 273
EaeI YGGCCR 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco147I AGGCCT 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 242
Eco57I CTGAAG 2 cut(s) 5, 186
EcoRI GAATTC 2 cut(s) 41, 87
EcoRII CCWGG 2 cut(s) 77, 131
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 242
FaiI YATR 4 cut(s) 6, 47, 71, 119
FauI CCCGC 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 3 cut(s) 84, 101, 282
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 2 cut(s) 77, 136
HindIII AAGCTT 1 cut(s) 262
HinfI GANTC 2 cut(s) 206, 292
Hpy188I TCNGA 4 cut(s) 24, 67, 205, 269
Hpy188III TCNNGA 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 34, 233
HpyCH4V TGCA 3 cut(s) 4, 110, 223
HpyF3I CTNAG 1 cut(s) 153
Kzo9I GATC 2 cut(s) 62, 273
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 8 cut(s) 64, 91, 118, 140, 145, 209, 236, 240
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 3 cut(s) 84, 101, 282
MalI GATC 2 cut(s) 64, 275
MboI GATC 2 cut(s) 62, 273
MboII GAAGA 3 cut(s) 50, 70, 192
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 2 cut(s) 41, 87
MnlI CCTC 1 cut(s) 221
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 246
MspR9I CCNGG 2 cut(s) 79, 133
MvaI CCWGG 2 cut(s) 79, 133
NdeII GATC 2 cut(s) 62, 273
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 290
PceI AGGCCT 1 cut(s) 77
PfeI GAWTC 2 cut(s) 206, 292
PkrI GCNGC 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 77, 131
PspGI CCWGG 2 cut(s) 77, 131
PsuI RGATCY 1 cut(s) 273
RsaI GTAC 2 cut(s) 105, 286
RsaNI GTAC 2 cut(s) 104, 285
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 62, 273
ScaI AGTACT 2 cut(s) 105, 286
ScrFI CCNGG 2 cut(s) 79, 133
SduI GDGCHC 1 cut(s) 242
SetI ASST 6 cut(s) 11, 134, 154, 193, 252, 266
SfuI TTCGAA 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 2 cut(s) 41, 87
SseBI AGGCCT 1 cut(s) 77
SsiI CCGC 2 cut(s) 164, 278
SspMI CTAG 3 cut(s) 84, 101, 282
StuI AGGCCT 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 77, 131
TaaI ACNGT 2 cut(s) 34, 233
TaqI TCGA 1 cut(s) 290
TasI AATT 2 cut(s) 41, 87
TatI WGTACW 2 cut(s) 103, 284
TfiI GAWTC 2 cut(s) 206, 292
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 34, 86, 183
XapI RAATTY 2 cut(s) 41, 87
XbaI TCTAGA 1 cut(s) 83
XspI CTAG 3 cut(s) 84, 101, 282
ZrmI AGTACT 2 cut(s) 105, 286
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.